Clone BS17734 Report

Search the DGRC for BS17734

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG11975-RA
Protein status:BS17734.pep: full length peptide match
Sequenced Size:1055

Clone Sequence Records

BS17734.complete Sequence

1055 bp assembled on 2010-02-09

GenBank Submission: KX803221

> BS17734.complete
GAAGTTATCAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACG
GGCTGCTCTACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCG
ACGGACACCGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGA
GCGCCAATACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTC
GTTGCAATTACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCG
CCCAACAAGGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATC
GCTGGACTTCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCA
TCGTGGTCGTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAA
CCACAGCAGCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTG
TGTGCTGTGCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTC
GAACTGGCCACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCG
CTTGAGGTGATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCT
GCAAGGCACGCGACTAGCCACCGCCGGGGAAAAGGGCACCCTCATCCGTA
TCTTCGATACGGAAAGTGGCAAGAAGGTATCAGAGCTGAGGCGCGGAAGC
AACCACGCCAACATATTCTGCATCAACTTTAACCACCAGTCCACAATGGT
GGTCGTCGCCTCCGATCATGGCACCATACACGTCTTCAACCTGGAGGACA
ACAAGCCCCGTGAATCCTCGCTGCCCATAATACCCAAGTATTTCTCGAGC
CAGTGGAGTTTTGTCAAGTTTTCAATACCCCAGGGACCTCGATGTGTATG
TGCCTTTGGCGCCGATCCTAATTCGGTTGTGGCCATTTGTGCAGACGGCC
ACTATTATAAATTCCTATTTAACAATAAAGGCGAGTGCAGTCGAGACATC
TGCACACAATTCCTTGAGCTGCAAGACGATGAGACCTAGAAGCTTTCTAG
ACCAT

BS17734.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1023 CG11975-PB 1..1023 17..1039 5115 100 Plus
CG11975-RA 1023 CG11975-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1733 CG11975-RB 132..1156 17..1041 5125 100 Plus
CG11975-RA 1360 CG11975-RA 132..1156 17..1041 5125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8993698..8994460 170..932 3815 100 Plus
3R 32079331 3R 8994526..8994635 932..1041 550 100 Plus
3R 32079331 3R 8993534..8993624 82..172 455 100 Plus
3R 32079331 3R 8993384..8993451 17..84 340 100 Plus
Blast to na_te.dros performed 2014-11-28 03:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5793..5840 239..286 141 77.1 Plus

BS17734.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:06 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 1..1023 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:28 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 128..1150 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:11 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 132..1154 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:06 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 122..1152 10..1041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:35 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 132..1154 17..1039 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:35 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8993384..8993450 17..83 100 -> Plus
3R 8993536..8993622 84..170 100 -> Plus
3R 8993699..8994460 171..932 100 -> Plus
3R 8994527..8994633 933..1039 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:11 Download gff for BS17734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4819106..4819172 17..83 100 -> Plus
arm_3R 4819258..4819344 84..170 100 -> Plus
arm_3R 4819421..4820182 171..932 100 -> Plus
arm_3R 4820249..4820355 933..1039 100   Plus

BS17734.3prime Sequence

901 bp (824 high quality bases) assembled on 2007-05-29

> BS17734.3prime
ATGGTCTAGAAAGCTTCTAGGTCTCATCGTCTTGCAGCTCAAGGAATTGT
GTGCAGATGTCTCGACTGCACTCGCCTTTATTGTTAAATAGGAATTTATA
ATAGTGGCCGTCTGCACAAATGGCCACAACCGAATTAGGATCGGCGCCAA
AGGCACATACACATCGAGGTCCCTGGGGTATTGAAAACTTGACAAAACTC
CACTGGCTCGAGAAATACTTGGGTATTATGGGCAGCGAGGATTCACGGGG
CTTGTTGTCCTCCAGGTTGAAGACGTGTATGGTGCCATGATCGGAGGCGA
CGACCACCATTGTGGACTGGTGGTTAAAGTTGATGCAGAATATGTTGGCG
TGGTTGCTTCCGCGCCTCAGCTCTGATACCTTCTTGCCACTTTCCGTATC
GAAGATACGGATGAGGGTGCCCTTTTCCCCGGCGGTGGCTAGTCGCGTGC
CTTGCAGATTAAGGGCAATACAGCTGATACCAGCCTCGTGGGCGATCACC
TCAAGCGGCGCCCGCTCTGTGTTGGCCAGATCAACAATTTGAACGTGGCC
AGTTCGACGGCCGGGGAATGCGAGGAGGCTCTTATTGCTGTGCGGGCACA
GCACACACAGCCCGTTGGGATTTGAGCTGGTCTCAAAGACGTGCAGCTGC
TGTGGTTGCTGAGTGAAGGTGAACACCTTAATCACGCCCTCCAACACGAC
CACGATGCGATCCCGACGCAGTCGTACCGCCCGCACGGGCTGATTGAAGT
CCAGCGATATGGCCGGGGACTTCTTCAGGTCATCCCACACGATCACCTTG
TTGGGCGGGTACAGCGGCCGGATGCCGCCTCAACCAGGGCTAAGTAATTG
CAACGAAACAGCATCTCCACATGGCTGAGACCACCCTCTGGAAAGTATTG
G

BS17734.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-PA 1023 CG11975-RA 209..1023 831..17 4075 100 Minus
CG11975-PA 1023 CG11975-RA 138..208 901..831 355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1733 CG11975-RB 269..1156 901..15 4415 99.9 Minus
CG11975-RA 1360 CG11975-RA 269..1156 901..15 4415 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8993698..8994460 885..124 3765 99.9 Minus
3R 32079331 3R 8994526..8994635 124..15 550 100 Minus
Blast to na_te.dros performed 2015-02-13 13:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5793..5840 817..770 141 77.1 Minus

BS17734.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:07 Download gff for BS17734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-PA 138..1023 17..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:50 Download gff for BS17734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 269..1156 15..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:35 Download gff for BS17734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 269..1156 15..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:35 Download gff for BS17734.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8993606..8993622 885..901 100 -> Minus
3R 8993699..8994460 124..884 99 -> Minus
3R 8994527..8994635 15..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:50 Download gff for BS17734.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4819328..4819344 885..901 100 -> Minus
arm_3R 4819421..4820182 124..884 99 -> Minus
arm_3R 4820249..4820357 15..123 100   Minus

BS17734.5prime Sequence

862 bp (796 high quality bases) assembled on 2007-05-29

> BS17734.5prime
GAAGTTATCAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACG
GGCTGCTCTACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCG
ACGGACACCGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGA
GCGCCAATACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTC
GTTGCAATTACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCG
CCCAACAAGGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATC
GCTGGACTTCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCA
TCGTGGTCGTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAA
CCACAGCAGCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTG
TGTGCTGTGCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTC
GAACTGGCCACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCG
CTTGAGGTGATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCT
GCAAGGCACGCGACTAGCCACCGCCGGGGAAAAGGGCACCCTCATCCGTA
TCTTCGATACGGAAAGTGGCAAGAAGGTATCAGAGCTGAGGCGCGGAAGC
AACCACGCCAACATATTCTGCATCAACTTTAACCACCAGTCCACAATGGT
GGTCGTCGCCTCCGATCATGGCACCATACACGTCTTCAACCTGGAGGACA
AACAGCCCCGTGAATCCTCGCTGCCCATAATACCCAAGTATTTCTCGAGC
CAGTGGAGTTTT

BS17734.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-PA 1023 CG11975-RA 1..846 17..862 4180 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1733 CG11975-RB 132..977 17..862 4200 99.8 Plus
CG11975-RA 1360 CG11975-RA 132..977 17..862 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8993698..8994390 170..862 3435 99.7 Plus
3R 32079331 3R 8993534..8993624 82..172 455 100 Plus
3R 32079331 3R 8993384..8993451 17..84 340 100 Plus
Blast to na_te.dros performed 2015-02-11 23:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5793..5840 239..286 141 77.1 Plus

BS17734.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:12 Download gff for BS17734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:43:00 Download gff for BS17734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 126..977 10..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:19 Download gff for BS17734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 126..977 10..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:19 Download gff for BS17734.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8993378..8993450 10..83 96 -> Plus
3R 8993536..8993622 84..170 100 -> Plus
3R 8993699..8994390 171..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:43:00 Download gff for BS17734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4819100..4819172 10..83 96 -> Plus
arm_3R 4819258..4819344 84..170 100 -> Plus
arm_3R 4819421..4820112 171..862 99   Plus

BS17734.pep Sequence

Translation from 16 to 1038

> BS17734.pep
MNLTEQNPYGNGLLYAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYFP
EGGLSHVEMLFRCNYLALVGGGIRPLYPPNKVIVWDDLKKSPAISLDFNQ
PVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQLHVFETSSNPNGLCVLCPH
SNKSLLAFPGRRTGHVQIVDLANTERAPLEVIAHEAGISCIALNLQGTRL
ATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNHQSTMVVVASD
HGTIHVFNLEDNKPRESSLPIIPKYFSSQWSFVKFSIPQGPRCVCAFGAD
PNSVVAICADGHYYKFLFNNKGECSRDICTQFLELQDDET*

BS17734.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-PB 340 CG11975-PB 1..340 1..340 1816 100 Plus
CG11975-PA 340 CG11975-PA 1..340 1..340 1816 100 Plus
Atg18a-PG 377 CG7986-PG 2..286 1..285 291 29.8 Plus
Atg18a-PC 377 CG7986-PC 2..286 1..285 291 29.8 Plus
Atg18a-PB 377 CG7986-PB 2..286 1..285 291 29.8 Plus