Clone Sequence Records
BS17736.3prime Sequence
835 bp (740 high quality bases) assembled on 2007-05-29
> BS17736.3prime
ATGGTCTAGAAAGCTTTTAGTGAATGGGTGTTTTAACAATTGCACTGGGC
GCAATGTAGTGATAACCAGGTATGGGCAGACCAGCAGTCTCCATTGATAT
TCTCATATTAATTAAGTATTGGGCCAGGGCCACCGAGTCCGGATTGCCGC
TGATGGTGATGGTGCGGTCGGTATTGCCGCCCTCGCGCTCCTCGCAGTTG
GAGATCCGGATCATGGCGCCGGATATTTGGCGAATCTCGGCGATCTTGGT
GCCACCCTTGCCGATGATGCAGCCAATCAGGTCGTTTGAGACGGTCATCT
CGTGCTGCTGCTGCTGGGCTCGGTTCGCGGGATTCGCTGTACGCAGTTGC
GACCCGGCCAGTGCAGCCAAGGCTGCTGTGTGGTTGATGCCCCCAGTGCT
GGCCGGATTCATCCCAGCCAGGCCCAAGGCGGCCAGACTGGCCAGCGGGT
TCTTGGCCACCTCTTGTGTGGGCACCGCGTAGTTTCCTTGGATGGTGAAA
GCCTGTCCATTGGCCAGGATGACGGGGCCAGTAACCTGTGGTTTTGGTCG
GTACGGGATGGTGGCACCGCGTGGCGGGGACTCCAACATGACAAGACATA
TCTGATAGATGCACTGGGTGATCTGCTCGGCGCTGCCGCTCAAGGTAACC
GCCCGCTCTGTGGAATTGGGTAGCATTTCACTGGCCACTTGGATGGAGCA
GCCCGTGGTCTGACGAATTTCCTTGATCTTTGAACCACTCTTGCCAATTA
ACGATCCACATTGACTGGCGGGCACAATCAATCGAATGGGTATTTGAGTT
TTACCAACTTTGCCTACATCATTGAACTGCGAGCA
BS17736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7437-PC | 1095 | mub-RC | 277..1095 | 835..17 | 4095 | 100 | Minus |
| CG7437-PD | 1620 | mub-RD | 277..1010 | 835..102 | 3670 | 100 | Minus |
| CG7437-PA | 1161 | mub-RA | 277..736 | 835..376 | 2300 | 100 | Minus |
| CG7437-PB | 1161 | mub-RB | 277..736 | 835..376 | 2300 | 100 | Minus |
| CG7437-PA | 1161 | mub-RA | 800..1161 | 378..17 | 1810 | 100 | Minus |
| CG7437-PB | 1161 | mub-RB | 800..1161 | 378..17 | 1810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 1118..1937 | 835..16 | 4100 | 100 | Minus |
| mub-RG | 3468 | CG7437-RG | 1225..2034 | 828..16 | 4010 | 99.6 | Minus |
| mub-RM | 9471 | CG7437-RM | 1225..2034 | 828..16 | 4010 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21921051..21921327 | 378..102 | 1385 | 100 | Minus |
| 3L | 28110227 | 3L | 21915260..21915424 | 745..581 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 21915534..21915657 | 582..459 | 620 | 100 | Minus |
| 3L | 28110227 | 3L | 21915105..21915200 | 835..740 | 465 | 99 | Minus |
| 3L | 28110227 | 3L | 21925178..21925265 | 103..16 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 21920901..21920987 | 462..376 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:46:12 has no hits.
BS17736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:31 Download gff for
BS17736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7437-PC | 278..1095 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:41 Download gff for
BS17736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 1119..1937 | 16..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:27 Download gff for
BS17736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 1119..1937 | 16..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:27 Download gff for
BS17736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21915106..21915195 | 745..834 | 100 | -> | Minus |
| 3L | 21915261..21915424 | 581..744 | 100 | -> | Minus |
| 3L | 21915536..21915655 | 461..580 | 100 | -> | Minus |
| 3L | 21920903..21920987 | 376..460 | 100 | -> | Minus |
| 3L | 21921054..21921327 | 102..375 | 100 | -> | Minus |
| 3L | 21925180..21925265 | 16..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:41 Download gff for
BS17736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21908361..21908524 | 581..744 | 100 | -> | Minus |
| arm_3L | 21908636..21908755 | 461..580 | 100 | -> | Minus |
| arm_3L | 21914003..21914087 | 376..460 | 100 | -> | Minus |
| arm_3L | 21908206..21908295 | 745..834 | 100 | -> | Minus |
| arm_3L | 21914154..21914427 | 102..375 | 100 | -> | Minus |
| arm_3L | 21918280..21918365 | 16..101 | 100 | | Minus |
BS17736.5prime Sequence
827 bp (751 high quality bases) assembled on 2007-05-29
> BS17736.5prime
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCA
GTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGA
TTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAG
ATCAAGGAAATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGA
AATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCG
AGCAGATCACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCC
CCGCCACGCGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGG
CCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACG
CGGTGCCCACACAAGAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCC
TTGGGCCTGGCTGGGATGAATCCGGCCAGCACTGGGGGCATCAACCACAC
AGCAGCCTTGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCG
CGAACCGAGCCCAGCAGCAGCAGCACG
BS17736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7437-PD | 1620 | mub-RD | 1..811 | 17..827 | 4055 | 100 | Plus |
| CG7437-PC | 1095 | mub-RC | 1..811 | 17..827 | 4055 | 100 | Plus |
| CG7437-PA | 1161 | mub-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
| CG7437-PB | 1161 | mub-RB | 1..736 | 17..752 | 3680 | 100 | Plus |
| CG7437-PA | 1161 | mub-RA | 800..877 | 750..827 | 390 | 100 | Plus |
| CG7437-PB | 1161 | mub-RB | 800..877 | 750..827 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 841..1652 | 16..827 | 4060 | 100 | Plus |
| mub-RD | 11975 | CG7437-RD | 841..1652 | 16..827 | 4060 | 100 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..1723 | 16..827 | 3930 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21915260..21915424 | 383..547 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 546..669 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 171..289 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 16..116 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 288..388 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21920901..21920987 | 666..752 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 21921051..21921128 | 750..827 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 114..172 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:23 has no hits.
BS17736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:36 Download gff for
BS17736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7437-PC | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:44 Download gff for
BS17736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RD | 841..1652 | 16..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:10 Download gff for
BS17736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RD | 841..1652 | 16..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:10 Download gff for
BS17736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21907821..21907920 | 16..115 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 116..172 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 173..289 | 100 | -> | Plus |
| 3L | 21915102..21915195 | 290..383 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 384..547 | 100 | -> | Plus |
| 3L | 21915536..21915655 | 548..667 | 100 | -> | Plus |
| 3L | 21920903..21920987 | 668..752 | 100 | -> | Plus |
| 3L | 21921054..21921128 | 753..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:44 Download gff for
BS17736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900921..21901020 | 16..115 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 116..172 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 173..289 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 290..383 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 384..547 | 100 | -> | Plus |
| arm_3L | 21908636..21908755 | 548..667 | 100 | -> | Plus |
| arm_3L | 21914003..21914087 | 668..752 | 100 | -> | Plus |
| arm_3L | 21914154..21914228 | 753..827 | 100 | | Plus |
BS17736.complete Sequence
1127 bp assembled on 2012-04-25
GenBank Submission: KX803074
> BS17736.complete
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCA
GTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGA
TTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAG
ATCAAGGAAATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGA
AATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCG
AGCAGATCACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCC
CCGCCACGCGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGG
CCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACG
CGGTGCCCACACAAGAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCC
TTGGGCCTGGCTGGGATGAATCCGGCCAGCACTGGGGGCATCAACCACAC
AGCAGCCTTGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCG
CGAACCGAGCCCAGCAGCAGCAGCACGAGATGACCGTCTCAAACGACCTG
ATTGGCTGCATCATCGGCAAGGGTGGCACCAAGATCGCCGAGATTCGCCA
AATATCCGGCGCCATGATCCGGATCTCCAACTGCGAGGAGCGCGAGGGCG
GCAATACCGACCGCACCATCACCATCAGCGGCAATCCGGACTCGGTGGCC
CTGGCCCAATACTTAATTAATATGAGAATATCAATGGAGACTGCTGGTCT
GCCCATACCTGGTTATCACTACATTGCGCCCAGTGCAATTGTTAAAACAC
CCATTCACTAAAAGCTTTCTAGACCAT
BS17736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 1095 | CG7437-PC | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| mub-RL | 1107 | CG7437-PL | 1..1107 | 17..1111 | 5320 | 98.9 | Plus |
| mub-RG | 1080 | CG7437-PG | 1..1080 | 17..1111 | 5180 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 841..1937 | 16..1112 | 5485 | 100 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..2008 | 16..1112 | 5330 | 98.9 | Plus |
| mub-RG | 3468 | CG7437-RG | 953..2034 | 16..1112 | 5190 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21921051..21921327 | 750..1026 | 1385 | 100 | Plus |
| 3L | 28110227 | 3L | 21915260..21915424 | 383..547 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 546..669 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 171..289 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 16..116 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 288..388 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21925178..21925265 | 1025..1112 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 21920901..21920987 | 666..752 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 114..172 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:25:56 has no hits.
BS17736.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:04 Download gff for
BS17736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 846..1938 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:55 Download gff for
BS17736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 842..1934 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:58 Download gff for
BS17736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 842..1934 | 17..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:58 Download gff for
BS17736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21907822..21907920 | 17..115 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 116..172 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 173..289 | 100 | -> | Plus |
| 3L | 21915102..21915195 | 290..383 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 384..547 | 100 | -> | Plus |
| 3L | 21915536..21915655 | 548..667 | 100 | -> | Plus |
| 3L | 21920903..21920987 | 668..752 | 100 | -> | Plus |
| 3L | 21921054..21921327 | 753..1026 | 100 | -> | Plus |
| 3L | 21925180..21925262 | 1027..1109 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:55 Download gff for
BS17736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21908636..21908755 | 548..667 | 100 | -> | Plus |
| arm_3L | 21914003..21914087 | 668..752 | 100 | -> | Plus |
| arm_3L | 21914154..21914427 | 753..1026 | 100 | -> | Plus |
| arm_3L | 21918280..21918362 | 1027..1109 | 100 | | Plus |
| arm_3L | 21900922..21901020 | 17..115 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 116..172 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 173..289 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 290..383 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 384..547 | 100 | -> | Plus |
BS17736.pep Sequence
Translation from 16 to 1110
> BS17736.pep
MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFR
EESGAKINISDGSCPERIVTVSGTTNAIFSAFTLITKKFEEWCSQFNDVG
KVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNS
TERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILA
NGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTAALAA
LAGSQLRTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAM
IRISNCEEREGGNTDRTITISGNPDSVALAQYLINMRISMETAGLPIPGY
HYIAPSAIVKTPIH*
BS17736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-PC | 364 | CG7437-PC | 1..364 | 1..364 | 1846 | 100 | Plus |
| mub-PL | 368 | CG7437-PL | 1..368 | 1..364 | 1831 | 98.9 | Plus |
| mub-PA | 386 | CG7437-PA | 1..386 | 1..364 | 1813 | 94.3 | Plus |
| mub-PG | 359 | CG7437-PG | 1..359 | 1..364 | 1786 | 98.6 | Plus |
| mub-PM | 359 | CG7437-PM | 1..359 | 1..364 | 1786 | 98.6 | Plus |
