Clone Sequence Records
BS17738.complete Sequence
1487 bp assembled on 2009-12-07
GenBank Submission: KX800750
> BS17738.complete
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCACTCTTATCT
TCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAAGGCCAAGCA
GATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGACTCGGCCTCCTACT
CAACGAAATCCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAACACG
GACAGCGAGACAAACAAACATCGGCTAAAGCTGCGCTTAATTCACGTCTA
CGACGACGAGTTCCGGCGGACCCTGCCCCAGAGTTTTGCGCTCTATAAGA
AGTATCAGATATCGATACATAATGATCCGCCAAAGGATCAGGACGCGTAC
AAGGAGCATCTGCAGGCGACTCCCCTACAGAATGAGAAACCCTGGGATGG
TCCCGAAATGGGCTACGGTTCGTTTCATCAGCAGTACTGGCTGGACGACA
AGTTGATTGCCGTCGGCGTGATTGACATTCTGCCGGGTTGTGTAAGCTCG
GTGTACTTTTTCTACGATCCGGACTATAGCTTTTTATCGCTTGGCACATA
TGGTTCACTCAGGGAAATTGAATTGGTGCAGTCGCTCGCCGAGAAGGTGC
CTTCTCTCAAGTATTACTATATGGGTTTCTACATACACTCCTGTCCCAAA
ATGCGCTACAAGGGCAAGTTGTCCCCCTCTTACTTGCTGTGCCCGGAGAC
CTATGAATGGCTACCTCTCACCGATGTTATTCGTGCTAAGCTAGACGAAC
ATAAATACCAGCGCTTAAACGAAGATCCTGCAGCTAGGGATGTGAATGAG
TTTTTGATGGAGCATTTGGACGAAGTTAAGCTGCTCTTGGGTGGAAGAAC
CCGCACAGACTACAAGCACTTTAGGCAGCTGCGTGGGACCGTCTCCGATG
ACGATATCATTATTGAGTACAGCAAGCTCGTGGGAAAAGAGTGTGCTCGG
CGCATGCTATACGTGAAGTAAAAGCTTTCTAGACCAT
BS17738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1455 | CG9204-PB | 1..1455 | 17..1471 | 7260 | 99.9 | Plus |
| Ate1-RA | 1434 | CG9204-PA | 1..1434 | 17..1471 | 6910 | 98.5 | Plus |
| Ate1-RD | 1458 | CG9204-PD | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1643 | CG9204-RB | 109..1564 | 17..1472 | 7265 | 99.9 | Plus |
| Ate1-RA | 1622 | CG9204-RA | 109..1543 | 17..1472 | 6915 | 98.5 | Plus |
| Ate1-RD | 1646 | CG9204-RD | 109..822 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256629 | 735..537 | 980 | 99.5 | Minus |
| 2R | 25286936 | 2R | 20255623..20255812 | 1067..878 | 935 | 99.5 | Minus |
| 2R | 25286936 | 2R | 20255408..20255574 | 1226..1060 | 820 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20255197..20255349 | 1378..1226 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 20255886..20256037 | 880..729 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 20255045..20255141 | 1472..1376 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:46:19 has no hits.
BS17738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:50 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 1..1455 | 17..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:27 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 100..1552 | 17..1469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:18 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 109..1561 | 17..1469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:50 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 100..1558 | 17..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:26 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 109..1561 | 17..1469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:26 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20256436..20256629 | 537..730 | 100 | <- | Minus |
| 2R | 20255048..20255138 | 1379..1469 | 100 | <- | Minus |
| 2R | 20255197..20255348 | 1227..1378 | 100 | <- | Minus |
| 2R | 20255408..20255571 | 1063..1226 | 99 | <- | Minus |
| 2R | 20255628..20255809 | 881..1062 | 100 | <- | Minus |
| 2R | 20255886..20256035 | 731..880 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:18 Download gff for
BS17738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143941..16144134 | 537..730 | 100 | <- | Minus |
| arm_2R | 16142913..16143076 | 1063..1226 | 99 | <- | Minus |
| arm_2R | 16143133..16143314 | 881..1062 | 100 | <- | Minus |
| arm_2R | 16143391..16143540 | 731..880 | 100 | <- | Minus |
| arm_2R | 16142553..16142643 | 1379..1469 | 100 | <- | Minus |
| arm_2R | 16142702..16142853 | 1227..1378 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
BS17738.3prime Sequence
854 bp (795 high quality bases) assembled on 2007-05-29
> BS17738.3prime
ATGGTCTAGAAAGCTTTTACTTCACGTATAGCATGCGCCGAGCACACTCT
TTTCCCACGAGCTTGCTGTACTCAATAATGATATCGTCATCGGAGACGGT
CCCACGCAGCTGCCTAAAGTGCTTGTAGTCTGTGCGGGTTCTTCCACCCA
AGAGCAGCTTAACTTCGTCCAAATGCTCCATCAAAAACTCATTCACATCC
CTAGCTGCAGGATCTTCGTTTAAGCGCTGGTATTTATGTTCGTCTAGCTT
AGCACGAATAACATCGGTGAGAGGTAGCCATTCATAGGTCTCCGGGCACA
GCAAGTAAGAGGGGGACAACTTGCCCTTGTAGCGCATTTTGGGACAGGAG
TGTATGTAGAAACCCATATAGTAATACTTGAGAGAAGGCACCTTCTCGGC
GAGCGACTGCACCAATTCAATTTCCCTGAGTGAACCATATGTGCCAAGCG
ATAAAAAGCTATAGTCCGGATCGTAGAAAAAGTACACCGAGCTTACACAA
CCCGGCAGAATGTCAATCACGCCGACGGCAATCAACTTGTCGTCCAGCCA
GTACTGCTGATGAAACGAACCGTAGCCCATTTCGGGACCATCCCAGGGTT
TCTCATTCTGTAGGGGAGTCGCCTGCAGATGCTCCTTGTACGCGTCCTGA
TCCTTTGGCGGATCATTATGTATCGATATCTGATACTTCTTATAGAGCGC
AAAACTCTGGGGCAGGGTCCGCCGGAACTCGTCGTCGTAGACGTGAATTA
AGCGCAGCTTTAGCCGATGTTTGTTTGTCTCGCTGTCCGTGTTCAAGAAG
TCGCGAAGTGTCTTTTCCTGTGTAAGGGAATTCGTTGAGTAGGAGGCCGA
GTCT
BS17738.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9204-PA | 1434 | Ate1-RA | 597..1434 | 854..17 | 4115 | 99.6 | Minus |
| CG9204-PB | 1455 | Ate1-RB | 618..1455 | 854..17 | 4115 | 99.6 | Minus |
| CG9204-PC | 1437 | Ate1-RC | 845..1437 | 609..17 | 2940 | 99.8 | Minus |
| CG9204-PC | 1437 | Ate1-RC | 597..693 | 854..758 | 435 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1643 | CG9204-RB | 726..1564 | 854..16 | 4150 | 99.6 | Minus |
| Ate1-RA | 1622 | CG9204-RA | 705..1543 | 854..16 | 4150 | 99.6 | Minus |
| Ate1-RD | 1646 | CG9204-RD | 974..1567 | 609..16 | 2955 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20255623..20255812 | 421..610 | 935 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20255408..20255574 | 262..428 | 820 | 99.4 | Plus |
| 2R | 25286936 | 2R | 20255197..20255349 | 110..262 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 20255886..20256037 | 608..759 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 20255045..20255141 | 16..112 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 20256431..20256532 | 753..854 | 465 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:11 has no hits.
BS17738.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:51 Download gff for
BS17738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9204-PB | 618..1455 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:33 Download gff for
BS17738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 705..1546 | 11..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:03 Download gff for
BS17738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 705..1546 | 11..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:03 Download gff for
BS17738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255042..20255138 | 11..109 | 97 | <- | Plus |
| 2R | 20255197..20255348 | 110..261 | 100 | <- | Plus |
| 2R | 20255408..20255571 | 262..425 | 99 | <- | Plus |
| 2R | 20255628..20255809 | 426..607 | 100 | <- | Plus |
| 2R | 20255886..20256035 | 608..757 | 100 | <- | Plus |
| 2R | 20256436..20256532 | 758..854 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:33 Download gff for
BS17738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143391..16143540 | 608..757 | 100 | <- | Plus |
| arm_2R | 16143941..16144037 | 758..854 | 97 | | Plus |
| arm_2R | 16142547..16142643 | 11..109 | 97 | <- | Plus |
| arm_2R | 16142702..16142853 | 110..261 | 100 | <- | Plus |
| arm_2R | 16142913..16143076 | 262..425 | 99 | <- | Plus |
| arm_2R | 16143133..16143314 | 426..607 | 100 | <- | Plus |
BS17738.5prime Sequence
919 bp (778 high quality bases) assembled on 2007-05-29
> BS17738.5prime
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCACTCTTATCT
TCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAAGGCCAAGCA
GATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGACTCGGCCTCCTACT
CAACGAAATCCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAACACG
GACAGCGAGACAAACAAACATCGGCTAAAGCTGCGCTTAATTCACGTCTA
CGACGACGAGTTCCGGCGGACCCTGCCCCAGAGTTTTGCGCTCTATAAGA
AGTATCAGATATCGATACATAATGATCCGCCAAAGGATCAGGACGCGTAC
AAGGAGCATCTGCAGGCGACTCCCCTACAGAATGAGAAACCCTGGGATGG
TCCCGAAATGGGCTACGGT
BS17738.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9204-PB | 1455 | Ate1-RB | 1..903 | 17..919 | 4515 | 100 | Plus |
| CG9204-PA | 1434 | Ate1-RA | 1..521 | 17..537 | 2605 | 100 | Plus |
| CG9204-PC | 1437 | Ate1-RC | 1..521 | 17..537 | 2605 | 100 | Plus |
| CG9204-PA | 1434 | Ate1-RA | 521..882 | 558..919 | 1810 | 100 | Plus |
| CG9204-PC | 1437 | Ate1-RC | 521..693 | 558..730 | 865 | 100 | Plus |
| CG9204-PC | 1437 | Ate1-RC | 845..885 | 879..919 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1643 | CG9204-RB | 109..1011 | 17..919 | 4515 | 100 | Plus |
| Ate1-RA | 1622 | CG9204-RA | 109..990 | 17..919 | 4190 | 97.7 | Plus |
| Ate1-RD | 1646 | CG9204-RD | 109..822 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256629 | 735..537 | 980 | 99.5 | Minus |
| 2R | 25286936 | 2R | 20255886..20256037 | 880..729 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
| 2R | 25286936 | 2R | 20255771..20255812 | 919..878 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:02:37 has no hits.
BS17738.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:26:56 Download gff for
BS17738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9204-PB | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:09:19 Download gff for
BS17738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 109..1011 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:10 Download gff for
BS17738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 109..1011 | 17..919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:10 Download gff for
BS17738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255771..20255809 | 881..919 | 100 | <- | Minus |
| 2R | 20255886..20256035 | 731..880 | 100 | <- | Minus |
| 2R | 20256436..20256629 | 537..730 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:09:19 Download gff for
BS17738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143276..16143314 | 881..919 | 100 | <- | Minus |
| arm_2R | 16143391..16143540 | 731..880 | 100 | <- | Minus |
| arm_2R | 16143941..16144134 | 537..730 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
BS17738.pep Sequence
Translation from 16 to 1470
> BS17738.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSSLLSSSAAAPISNKPCKKAKQMRLDR
RLAKLGDSASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFR
RTLPQSFALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGY
GSFHQQYWLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLRE
IELVQSLAEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLP
LTDVIRAKLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYK
HFRQLRGTVSDDDIIIEYSKLVGKECARRMLYVK*
BS17738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-PB | 484 | CG9204-PB | 1..484 | 1..484 | 2576 | 100 | Plus |
| Ate1-PA | 477 | CG9204-PA | 1..477 | 1..484 | 2530 | 98.6 | Plus |
| Ate1-PD | 485 | CG9204-PD | 1..485 | 1..484 | 2366 | 93 | Plus |
| Ate1-PC | 478 | CG9204-PC | 1..478 | 1..484 | 2320 | 91.6 | Plus |
