Clone Sequence Records
BS17743.complete Sequence
1610 bp assembled on 2009-12-07
GenBank Submission: KX804332
> BS17743.complete
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGA
AAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACC
TGCGACTGGAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCG
CAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTA
AGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAAC
GGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGA
TGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGC
CCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAG
CCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAA
CGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGA
ATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTCCCACAAGTAC
ACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGACACGAGATCTC
CGTGTTCTCGCTAACGCACAAGGATGACCCCAACTACTGGACCGGCGGCA
GCTACGACGACTGGCTGGCCGAGATGGCCGGCTCCCGACTGATCGTGGAG
CGCTTCGCCAACATCACCGACGGCTCCATCATCGGCATGCGGGCGCCCTA
CCTCCGCGTGGGCGGCAACAAGCAGTTCGAGATGATGGCCGATCAGTTCT
TCGTGTACGACGCCTCCATCACCGCCTCCCTTGGCCGCGTGCCCATTTGG
CCATACACCCTGTACTTCCGCATGCCGCACAAGTGCAACGGCAACGCGCA
CAACTGCCCATCGAGGAGCCACCCCGTGTGGGAGATGGTCATGAACGAGC
TGGACCGGCGCGACGATCCCACCTTCGACGAGTCCCTGCCCGGTTGCCAT
ATGGTGGACTCCTGCTCAAACGTAGCCAGCGGCGACCAGTTCGCACGCCT
GCTGCGCCACAACTTCAACCGCCACTACAATAGCAACCGTGCTCCACTTG
GACTCCACTTCCACGCTTCGTGGCTGAAGTCGAAGAAGGAGTACCGCGAC
GAGCTGATCAAATTCATCGAGGAGATGCTCGGCCGCAACGACGTGTTCTT
CGTGACCAACCTGCAGGTGATCCAGTGGATGCAGAACCCCACCGAGCTGA
ACTCGCTGCGCGACTTCCAGGAGTGGAAGGAGAAGTGCGACGTCAAGGGC
CAGCCCTACTGCTCTCTGCCCAACGCGTGTCCCCTGACCACCAGGGAGCT
GCCCGGCGAGACGCTGCGTCTCTTCACGTGCATGGAGTGCCCCAACAACT
ACCCCTGGATCCTGGATCCCACCGGCGATGGCTTCTCCGTTTAAAAGCTT
TCTAGACCAT
BS17743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RG | 1578 | CG8756-PG | 1..1578 | 17..1594 | 7890 | 100 | Plus |
| verm-RI | 1668 | CG8756-PI | 364..1668 | 290..1594 | 6525 | 100 | Plus |
| verm-RH | 1596 | CG8756-PH | 292..1596 | 290..1594 | 6525 | 100 | Plus |
| verm-RI | 1668 | CG8756-PI | 125..236 | 69..180 | 560 | 100 | Plus |
| verm-RI | 1668 | CG8756-PI | 1..52 | 17..68 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RG | 2165 | CG8756-RG | 114..1692 | 16..1594 | 7895 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 478..1782 | 290..1594 | 6525 | 100 | Plus |
| verm-RH | 2183 | CG8756-RH | 406..1710 | 290..1594 | 6525 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 239..350 | 69..180 | 560 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 114..166 | 16..68 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19690506..19691656 | 1594..444 | 5755 | 100 | Minus |
| 3L | 28110227 | 3L | 19701556..19702487 | 1386..455 | 915 | 73.7 | Minus |
| 3L | 28110227 | 3L | 19691809..19691958 | 443..294 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19692265..19692379 | 293..179 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 19692983..19693095 | 180..68 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 19694973..19695025 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:46:08 has no hits.
BS17743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:51 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LCBP1-RD | 1..1578 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:27 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LCBP1-RD | 80..1655 | 17..1592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:13 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 118..1693 | 17..1592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:51 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LCBP1-RD | 74..1657 | 12..1594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:22 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 115..1690 | 17..1592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:22 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19692265..19692377 | 181..293 | 100 | <- | Minus |
| 3L | 19692983..19693094 | 69..180 | 100 | <- | Minus |
| 3L | 19694973..19695024 | 17..68 | 100 | | Minus |
| 3L | 19690508..19691656 | 444..1592 | 100 | <- | Minus |
| 3L | 19691809..19691958 | 294..443 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:13 Download gff for
BS17743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19685365..19685477 | 181..293 | 100 | <- | Minus |
| arm_3L | 19686083..19686194 | 69..180 | 100 | <- | Minus |
| arm_3L | 19688073..19688124 | 17..68 | 100 | | Minus |
| arm_3L | 19683608..19684756 | 444..1592 | 100 | <- | Minus |
| arm_3L | 19684909..19685058 | 294..443 | 100 | <- | Minus |
BS17743.3prime Sequence
828 bp (827 high quality bases) assembled on 2007-05-29
> BS17743.3prime
ATGGTCTAGAAAGCTTTTAAACGGAGAAGCCATCGCCGGTGGGATCCAGG
ATCCAGGGGTAGTTGTTGGGGCACTCCATGCACGTGAAGAGACGCAGCGT
CTCGCCGGGCAGCTCCCTGGTGGTCAGGGGACACGCGTTGGGCAGAGAGC
AGTAGGGCTGGCCCTTGACGTCGCACTTCTCCTTCCACTCCTGGAAGTCG
CGCAGCGAGTTCAGCTCGGTGGGGTTCTGCATCCACTGGATCACCTGCAG
GTTGGTCACGAAGAACACGTCGTTGCGGCCGAGCATCTCCTCGATGAATT
TGATCAGCTCGTCGCGGTACTCCTTCTTCGACTTCAGCCACGAAGCGTGG
AAGTGGAGTCCAAGTGGAGCACGGTTGCTATTGTAGTGGCGGTTGAAGTT
GTGGCGCAGCAGGCGTGCGAACTGGTCGCCGCTGGCTACGTTTGAGCAGG
AGTCCACCATATGGCAACCGGGCAGGGACTCGTCGAAGGTGGGATCGTCG
CGCCGGTCCAGCTCGTTCATGACCATCTCCCACACGGGGTGGCTCCTCGA
TGGGCAGTTGTGCGCGTTGCCGTTGCACTTGTGCGGCATGCGGAAGTACA
GGGTGTATGGCCAAATGGGCACGCGGCCAAGGGAGGCGGTGATGGAGGCG
TCGTACACGAAGAACTGATCGGCCATCATCTCGAACTGCTTGTTGCCGCC
CACGCGGAGGTAGGGCGCCCGCATGCCGATGATGGAGCCGTCGGTGATGT
TGGCGAAGCGCTCCACGATCAGTCGGGAGCCGGCCATCTCGGCCAGCCAG
TCGTCGTAGCTGCCGCCGGTCCAGTAGT
BS17743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8756-PB | 1650 | LCBP1-RB | 839..1650 | 828..17 | 4060 | 100 | Minus |
| CG8756-PA | 1713 | LCBP1-RA | 902..1713 | 828..17 | 4060 | 100 | Minus |
| CG8756-PC | 1596 | LCBP1-RC | 785..1596 | 828..17 | 4060 | 100 | Minus |
| CG8756-PD | 1578 | LCBP1-RD | 767..1578 | 828..17 | 4060 | 100 | Minus |
| CG32209-PB | 1626 | CG32209-RB | 1106..1152 | 537..491 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RG | 2165 | CG8756-RG | 881..1692 | 828..17 | 4060 | 100 | Minus |
| verm-RI | 2255 | CG8756-RI | 971..1782 | 828..17 | 4060 | 100 | Minus |
| verm-RH | 2183 | CG8756-RH | 899..1710 | 828..17 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19690506..19691317 | 17..828 | 4060 | 100 | Plus |
| 3L | 28110227 | 3L | 19701556..19702061 | 225..727 | 575 | 74.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:14:00 has no hits.
BS17743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:23 Download gff for
BS17743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8756-PD | 767..1578 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:56 Download gff for
BS17743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RF | 1011..1829 | 9..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:50 Download gff for
BS17743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RH | 899..1717 | 9..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:50 Download gff for
BS17743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19690499..19691317 | 9..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:56 Download gff for
BS17743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19683599..19684417 | 9..828 | 99 | | Plus |
BS17743.5prime Sequence
925 bp (803 high quality bases) assembled on 2007-05-29
> BS17743.5prime
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGA
AAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACC
TGCGACTGGAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCG
CAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTA
AGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAAC
GGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGA
TGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGC
CCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAG
CCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAA
CGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGA
ATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTCCCACAAGTAC
ACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGACACGAGATCTC
CGTGTTCTCGCTAACGCACAAGGATGACCCCAACTACTGGACCGGCGGCA
GCTACGACGACTGGCTGGGCGAGATGGCCGGCTCCCGACTGATCGTGGAG
CGCTTCGCCACATCACCGACGGCTCCATCATCGGCATGCGGGCGCCCTAC
CTCCGCGTGGGCGGCAACAAGCAGT
BS17743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8756-PD | 1578 | LCBP1-RD | 1..844 | 17..860 | 4195 | 99.8 | Plus |
| CG8756-PB | 1650 | LCBP1-RB | 125..916 | 69..860 | 3935 | 99.8 | Plus |
| CG8756-PA | 1713 | LCBP1-RA | 300..979 | 181..860 | 3375 | 99.8 | Plus |
| CG8756-PC | 1596 | LCBP1-RC | 292..862 | 290..860 | 2830 | 99.8 | Plus |
| CG8756-PA | 1713 | LCBP1-RA | 1..164 | 17..180 | 820 | 100 | Plus |
| CG8756-PC | 1596 | LCBP1-RC | 1..164 | 17..180 | 820 | 100 | Plus |
| CG8756-PD | 1578 | LCBP1-RD | 845..910 | 860..925 | 330 | 100 | Plus |
| CG8756-PB | 1650 | LCBP1-RB | 917..982 | 860..925 | 330 | 100 | Plus |
| CG8756-PA | 1713 | LCBP1-RA | 980..1045 | 860..925 | 330 | 100 | Plus |
| CG8756-PC | 1596 | LCBP1-RC | 863..928 | 860..925 | 330 | 100 | Plus |
| CG32209-PB | 1626 | CG32209-RB | 685..755 | 653..723 | 280 | 95.7 | Plus |
| CG8756-PB | 1650 | LCBP1-RB | 1..52 | 17..68 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RG | 2165 | CG8756-RG | 114..1024 | 16..925 | 4515 | 99.8 | Plus |
| verm-RI | 2255 | CG8756-RI | 478..1114 | 290..925 | 3145 | 99.7 | Plus |
| verm-RH | 2183 | CG8756-RH | 406..1042 | 290..925 | 3145 | 99.7 | Plus |
| verm-RI | 2255 | CG8756-RI | 239..350 | 69..180 | 560 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 114..166 | 16..68 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19691174..19691656 | 925..444 | 2350 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19691809..19691958 | 443..294 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19692265..19692379 | 293..179 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 19692983..19693095 | 180..68 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 19702222..19702487 | 723..455 | 500 | 79.9 | Minus |
| 3L | 28110227 | 3L | 19694973..19695025 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:36:58 has no hits.
BS17743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:29 Download gff for
BS17743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8756-PD | 1..910 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:01 Download gff for
BS17743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 112..1027 | 12..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:25 Download gff for
BS17743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 109..1024 | 12..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:25 Download gff for
BS17743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19692983..19693094 | 69..180 | 100 | <- | Minus |
| 3L | 19694973..19695030 | 12..68 | 96 | | Minus |
| 3L | 19691174..19691656 | 444..925 | 99 | <- | Minus |
| 3L | 19691809..19691958 | 294..443 | 100 | <- | Minus |
| 3L | 19692265..19692377 | 181..293 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:01 Download gff for
BS17743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19684274..19684756 | 444..925 | 99 | <- | Minus |
| arm_3L | 19684909..19685058 | 294..443 | 100 | <- | Minus |
| arm_3L | 19685365..19685477 | 181..293 | 100 | <- | Minus |
| arm_3L | 19686083..19686194 | 69..180 | 100 | <- | Minus |
| arm_3L | 19688073..19688130 | 12..68 | 96 | | Minus |
BS17743.pep Sequence
Translation from 16 to 1593
> BS17743.pep
MARWWPILSVVCLCLAVAHGQDKLEGVDVEEVCADRPADEYFRLETDGDC
REVYRCTKSGLKEIQCPSGLAFDVIKQTCDWKAKVTNCDEKEKPRKAKPI
LKTDEPICPEGKLSCGDGECLDKELFCNGKSDCKDESDENACSVDEDPNR
APECDPTQCALPDCFCSADGTRIPGGIEPQQVPQMITITFNGAVNVDNID
LYEDIFNGQRQNPNGCSIKGTFFVSHKYTNYSAVQDLHRRGHEISVFSLT
HKDDPNYWTGGSYDDWLAEMAGSRLIVERFANITDGSIIGMRAPYLRVGG
NKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSR
SHPVWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARLLRHNF
NRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFFVTNLQ
VIQWMQNPTELNSLRDFQEWKEKCDVKGQPYCSLPNACPLTTRELPGETL
RLFTCMECPNNYPWILDPTGDGFSV*
BS17743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-PG | 525 | CG8756-PG | 1..525 | 1..525 | 2922 | 100 | Plus |
| verm-PH | 531 | CG8756-PH | 1..531 | 1..525 | 2819 | 95.7 | Plus |
| verm-PI | 555 | CG8756-PI | 1..555 | 1..525 | 2779 | 91.4 | Plus |
| serp-PC | 541 | CG32209-PC | 45..540 | 30..523 | 1803 | 61.6 | Plus |
| serp-PB | 541 | CG32209-PB | 45..540 | 30..523 | 1803 | 61.6 | Plus |
