Clone BS17746 Report

Search the DGRC for BS17746

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptPu-RA
Protein status:BS17746.pep: full length peptide match
Sequenced Size:1007

Clone Sequence Records

BS17746.complete Sequence

1007 bp assembled on 2010-02-09

GenBank Submission: KX801950

> BS17746.complete
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGT
TATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGT
CGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGA
TCGCAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTC
GTAGAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAA
CAGCAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCA
AGACCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAATAGAAGCTTTCT
AGACCAT

BS17746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 975 CG9441-PA 1..975 17..991 4875 100 Plus
Pu-RC 927 CG9441-PC 304..927 368..991 3120 100 Plus
Pu-RB 822 CG9441-PB 199..822 368..991 3120 100 Plus
Pu-RC 927 CG9441-PC 1..305 17..321 1525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 175..1151 16..992 4885 100 Plus
Pu-RC 1744 CG9441-RC 478..1102 368..992 3125 100 Plus
Pu-RB 1625 CG9441-RB 359..983 368..992 3125 100 Plus
Pu-RC 1744 CG9441-RC 174..479 16..321 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179292..21179645 16..369 1770 100 Plus
2R 25286936 2R 21179935..21180147 366..578 1065 100 Plus
2R 25286936 2R 21181419..21181585 578..744 835 100 Plus
2R 25286936 2R 21181836..21181966 862..992 655 100 Plus
2R 25286936 2R 21181644..21181761 744..861 590 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:36:50 has no hits.

BS17746.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:52 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 1..975 17..991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:29 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 175..1143 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:26 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 176..1144 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:52 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 168..1150 9..992 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:56 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 176..1144 17..985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:56 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21179293..21179644 17..368 100 -> Plus
2R 21179938..21180147 369..578 100 -> Plus
2R 21181420..21181585 579..744 100 -> Plus
2R 21181645..21181761 745..861 100 -> Plus
2R 21181836..21181959 862..985 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:26 Download gff for BS17746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17069150..17069266 745..861 100 -> Plus
arm_2R 17069341..17069464 862..985 100   Plus
arm_2R 17066798..17067149 17..368 100 -> Plus
arm_2R 17067443..17067652 369..578 100 -> Plus
arm_2R 17068925..17069090 579..744 100 -> Plus

BS17746.3prime Sequence

851 bp (807 high quality bases) assembled on 2007-05-29

> BS17746.3prime
ATGGTCTAGAAAGCTTCTATTTGCTATTGACTAAGTTCAGGAATTCCTCA
CGGGTCTTGGGATCGTCTCGGAACACGCCCAGCATAGTTGAGGTAACAGT
TTTGCTGTTGATCTTCTGCACGCCACGCATCACCATGCACATGTGGACTC
CCTCTACGACCACTGCTACTCCAGCGGGTTGCACGGCCTGAGTCACGGCC
ACTGCGATCTGCTTAGTTAAGCGCTCCTGGACTTGCAGGCGACGCGAAAA
TATTTCGACAATGCGTGCCAATTTACTGAGTCCGAGAATCTTGTTGCACG
GCAAATAACCGATGGAAACTTTGCCGTAGAAGGGCACCAGATGATGCTCG
CACATGGAGAACATTTCAATATCCTTGACCACCACCATTTCGTCATGATC
CTCGTCGAAAACGGCGCCATTGAGAACATCCTCGAGACTCTGGTCGTAGC
CCTTGGTGAAGTACAGCATGGCCTTGGCTGCCCGCTCCGGCGTCTTGATC
AGTCCCTGGCGATCGGGATTCTCGCCCAGGCCGCCCAAGAGTAGACGATA
CGAGCGTGCCATGTCCGGAAGGAGGGCCTCTCGCGTCGGCGGCTTGTGGT
CCAGCTCCAGGTCGTGGTGGAACGTGCACTTCTCGTGGCCTGGCGTTGTC
GATGTACGCGGTGTCAGTGGTGTTTTCGGTTGTGTACCATCACTATCCGG
ACTGCTGCCGTTGGTCTTCAGGATGAGGCGGGGTCTCTGGTTGCCGGCCA
ACGGGACGAGAGCAGGAGCTGGCGCCACCTCCTCGACGGGTGTGCCCGCA
ATGGCAGTGGCCTCCTCCGCCTGGTTCTGCTGCCTGTCCGCCAGCGAGGA
G

BS17746.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9441-PA 975 Pu-RA 141..975 851..17 4175 100 Minus
CG9441-PC 927 Pu-RC 304..927 640..17 3120 100 Minus
CG9441-PB 822 Pu-RB 199..822 640..17 3120 100 Minus
CG9441-PC 927 Pu-RC 141..305 851..687 825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 316..1151 851..16 4180 100 Minus
Pu-RC 1744 CG9441-RC 478..1102 640..16 3125 100 Minus
Pu-RB 1625 CG9441-RB 359..983 640..16 3125 100 Minus
Pu-RC 1744 CG9441-RC 315..479 851..687 825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179433..21179645 851..639 1065 100 Minus
2R 25286936 2R 21179935..21180147 642..430 1065 100 Minus
2R 25286936 2R 21181419..21181585 430..264 835 100 Minus
2R 25286936 2R 21181836..21181966 146..16 655 100 Minus
2R 25286936 2R 21181644..21181761 264..147 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:15:45 has no hits.

BS17746.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:52 Download gff for BS17746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9441-PA 141..975 17..851 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:13 Download gff for BS17746.3prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 316..1151 16..851 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:43 Download gff for BS17746.3prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 316..1151 16..851 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:43 Download gff for BS17746.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21179433..21179644 640..851 100 -> Minus
2R 21179938..21180147 430..639 100 -> Minus
2R 21181420..21181585 264..429 100 -> Minus
2R 21181645..21181761 147..263 100 -> Minus
2R 21181836..21181966 16..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:13 Download gff for BS17746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17066938..17067149 640..851 100 -> Minus
arm_2R 17067443..17067652 430..639 100 -> Minus
arm_2R 17068925..17069090 264..429 100 -> Minus
arm_2R 17069150..17069266 147..263 100 -> Minus
arm_2R 17069341..17069471 16..146 100   Minus

BS17746.5prime Sequence

820 bp (805 high quality bases) assembled on 2007-05-29

> BS17746.5prime
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGT
TATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGT
CGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGA
TCGCAGTGGCCGTGACTCAG

BS17746.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9441-PA 975 Pu-RA 1..804 17..820 4020 100 Plus
CG9441-PC 927 Pu-RC 304..756 368..820 2265 100 Plus
CG9441-PB 822 Pu-RB 199..651 368..820 2265 100 Plus
CG9441-PC 927 Pu-RC 1..305 17..321 1525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 175..979 16..820 4025 100 Plus
Pu-RC 1744 CG9441-RC 478..930 368..820 2265 100 Plus
Pu-RB 1625 CG9441-RB 359..811 368..820 2265 100 Plus
Pu-RC 1744 CG9441-RC 174..479 16..321 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179292..21179645 16..369 1770 100 Plus
2R 25286936 2R 21179935..21180147 366..578 1065 100 Plus
2R 25286936 2R 21181419..21181585 578..744 835 100 Plus
2R 25286936 2R 21181644..21181720 744..820 385 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:48:53 has no hits.

BS17746.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:59 Download gff for BS17746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9441-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:53 Download gff for BS17746.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 169..979 9..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:53 Download gff for BS17746.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 169..979 9..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:53 Download gff for BS17746.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21179286..21179644 9..368 99 -> Plus
2R 21179938..21180147 369..578 100 -> Plus
2R 21181420..21181585 579..744 100 -> Plus
2R 21181645..21181720 745..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:53 Download gff for BS17746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17068925..17069090 579..744 100 -> Plus
arm_2R 17069150..17069225 745..820 100   Plus
arm_2R 17067443..17067652 369..578 100 -> Plus
arm_2R 17066791..17067149 9..368 99 -> Plus

BS17746.pep Sequence

Translation from 16 to 990

> BS17746.pep
MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL
ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS
DGTQPKTPLTPRTSTTPGHEKCTFHHDLELDHKPPTREALLPDMARSYRL
LLGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHD
EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSR
RLQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVT
STMLGVFRDDPKTREEFLNLVNSK*

BS17746.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-PA 324 CG9441-PA 1..324 1..324 1660 100 Plus
Pu-PC 308 CG9441-PC 1..308 1..324 1546 95.1 Plus
Pu-PB 273 CG9441-PB 63..273 114..324 1071 98.6 Plus