Clone Sequence Records
BS17746.complete Sequence
1007 bp assembled on 2010-02-09
GenBank Submission: KX801950
> BS17746.complete
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGT
TATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGT
CGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGA
TCGCAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTC
GTAGAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAA
CAGCAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCA
AGACCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAATAGAAGCTTTCT
AGACCAT
BS17746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 975 | CG9441-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Pu-RC | 927 | CG9441-PC | 304..927 | 368..991 | 3120 | 100 | Plus |
Pu-RB | 822 | CG9441-PB | 199..822 | 368..991 | 3120 | 100 | Plus |
Pu-RC | 927 | CG9441-PC | 1..305 | 17..321 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 175..1151 | 16..992 | 4885 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 478..1102 | 368..992 | 3125 | 100 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..983 | 368..992 | 3125 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 174..479 | 16..321 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179645 | 16..369 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 21179935..21180147 | 366..578 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 578..744 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181836..21181966 | 862..992 | 655 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 744..861 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:36:50 has no hits.
BS17746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:52 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:29 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 175..1143 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:26 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 176..1144 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:52 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 168..1150 | 9..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:56 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 176..1144 | 17..985 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:56 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179293..21179644 | 17..368 | 100 | -> | Plus |
2R | 21179938..21180147 | 369..578 | 100 | -> | Plus |
2R | 21181420..21181585 | 579..744 | 100 | -> | Plus |
2R | 21181645..21181761 | 745..861 | 100 | -> | Plus |
2R | 21181836..21181959 | 862..985 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:26 Download gff for
BS17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17069150..17069266 | 745..861 | 100 | -> | Plus |
arm_2R | 17069341..17069464 | 862..985 | 100 | | Plus |
arm_2R | 17066798..17067149 | 17..368 | 100 | -> | Plus |
arm_2R | 17067443..17067652 | 369..578 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 579..744 | 100 | -> | Plus |
BS17746.3prime Sequence
851 bp (807 high quality bases) assembled on 2007-05-29
> BS17746.3prime
ATGGTCTAGAAAGCTTCTATTTGCTATTGACTAAGTTCAGGAATTCCTCA
CGGGTCTTGGGATCGTCTCGGAACACGCCCAGCATAGTTGAGGTAACAGT
TTTGCTGTTGATCTTCTGCACGCCACGCATCACCATGCACATGTGGACTC
CCTCTACGACCACTGCTACTCCAGCGGGTTGCACGGCCTGAGTCACGGCC
ACTGCGATCTGCTTAGTTAAGCGCTCCTGGACTTGCAGGCGACGCGAAAA
TATTTCGACAATGCGTGCCAATTTACTGAGTCCGAGAATCTTGTTGCACG
GCAAATAACCGATGGAAACTTTGCCGTAGAAGGGCACCAGATGATGCTCG
CACATGGAGAACATTTCAATATCCTTGACCACCACCATTTCGTCATGATC
CTCGTCGAAAACGGCGCCATTGAGAACATCCTCGAGACTCTGGTCGTAGC
CCTTGGTGAAGTACAGCATGGCCTTGGCTGCCCGCTCCGGCGTCTTGATC
AGTCCCTGGCGATCGGGATTCTCGCCCAGGCCGCCCAAGAGTAGACGATA
CGAGCGTGCCATGTCCGGAAGGAGGGCCTCTCGCGTCGGCGGCTTGTGGT
CCAGCTCCAGGTCGTGGTGGAACGTGCACTTCTCGTGGCCTGGCGTTGTC
GATGTACGCGGTGTCAGTGGTGTTTTCGGTTGTGTACCATCACTATCCGG
ACTGCTGCCGTTGGTCTTCAGGATGAGGCGGGGTCTCTGGTTGCCGGCCA
ACGGGACGAGAGCAGGAGCTGGCGCCACCTCCTCGACGGGTGTGCCCGCA
ATGGCAGTGGCCTCCTCCGCCTGGTTCTGCTGCCTGTCCGCCAGCGAGGA
G
BS17746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9441-PA | 975 | Pu-RA | 141..975 | 851..17 | 4175 | 100 | Minus |
CG9441-PC | 927 | Pu-RC | 304..927 | 640..17 | 3120 | 100 | Minus |
CG9441-PB | 822 | Pu-RB | 199..822 | 640..17 | 3120 | 100 | Minus |
CG9441-PC | 927 | Pu-RC | 141..305 | 851..687 | 825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 316..1151 | 851..16 | 4180 | 100 | Minus |
Pu-RC | 1744 | CG9441-RC | 478..1102 | 640..16 | 3125 | 100 | Minus |
Pu-RB | 1625 | CG9441-RB | 359..983 | 640..16 | 3125 | 100 | Minus |
Pu-RC | 1744 | CG9441-RC | 315..479 | 851..687 | 825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179433..21179645 | 851..639 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 21179935..21180147 | 642..430 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 21181419..21181585 | 430..264 | 835 | 100 | Minus |
2R | 25286936 | 2R | 21181836..21181966 | 146..16 | 655 | 100 | Minus |
2R | 25286936 | 2R | 21181644..21181761 | 264..147 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:15:45 has no hits.
BS17746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:52 Download gff for
BS17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9441-PA | 141..975 | 17..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:13 Download gff for
BS17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 316..1151 | 16..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:43 Download gff for
BS17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 316..1151 | 16..851 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:43 Download gff for
BS17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179433..21179644 | 640..851 | 100 | -> | Minus |
2R | 21179938..21180147 | 430..639 | 100 | -> | Minus |
2R | 21181420..21181585 | 264..429 | 100 | -> | Minus |
2R | 21181645..21181761 | 147..263 | 100 | -> | Minus |
2R | 21181836..21181966 | 16..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:13 Download gff for
BS17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17066938..17067149 | 640..851 | 100 | -> | Minus |
arm_2R | 17067443..17067652 | 430..639 | 100 | -> | Minus |
arm_2R | 17068925..17069090 | 264..429 | 100 | -> | Minus |
arm_2R | 17069150..17069266 | 147..263 | 100 | -> | Minus |
arm_2R | 17069341..17069471 | 16..146 | 100 | | Minus |
BS17746.5prime Sequence
820 bp (805 high quality bases) assembled on 2007-05-29
> BS17746.5prime
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGT
TATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGT
CGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGA
TCGCAGTGGCCGTGACTCAG
BS17746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9441-PA | 975 | Pu-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG9441-PC | 927 | Pu-RC | 304..756 | 368..820 | 2265 | 100 | Plus |
CG9441-PB | 822 | Pu-RB | 199..651 | 368..820 | 2265 | 100 | Plus |
CG9441-PC | 927 | Pu-RC | 1..305 | 17..321 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 175..979 | 16..820 | 4025 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 478..930 | 368..820 | 2265 | 100 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..811 | 368..820 | 2265 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 174..479 | 16..321 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179645 | 16..369 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 21179935..21180147 | 366..578 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 578..744 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181720 | 744..820 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:48:53 has no hits.
BS17746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:27:59 Download gff for
BS17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9441-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:01:53 Download gff for
BS17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 169..979 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:53 Download gff for
BS17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 169..979 | 9..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:53 Download gff for
BS17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179286..21179644 | 9..368 | 99 | -> | Plus |
2R | 21179938..21180147 | 369..578 | 100 | -> | Plus |
2R | 21181420..21181585 | 579..744 | 100 | -> | Plus |
2R | 21181645..21181720 | 745..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:01:53 Download gff for
BS17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17068925..17069090 | 579..744 | 100 | -> | Plus |
arm_2R | 17069150..17069225 | 745..820 | 100 | | Plus |
arm_2R | 17067443..17067652 | 369..578 | 100 | -> | Plus |
arm_2R | 17066791..17067149 | 9..368 | 99 | -> | Plus |
BS17746.pep Sequence
Translation from 16 to 990
> BS17746.pep
MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL
ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS
DGTQPKTPLTPRTSTTPGHEKCTFHHDLELDHKPPTREALLPDMARSYRL
LLGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHD
EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSR
RLQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVT
STMLGVFRDDPKTREEFLNLVNSK*
BS17746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-PA | 324 | CG9441-PA | 1..324 | 1..324 | 1660 | 100 | Plus |
Pu-PC | 308 | CG9441-PC | 1..308 | 1..324 | 1546 | 95.1 | Plus |
Pu-PB | 273 | CG9441-PB | 63..273 | 114..324 | 1071 | 98.6 | Plus |