Clone BS17752 Report

Search the DGRC for BS17752

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG11309-RA
Protein status:BS17752.pep: full length peptide match
Sequenced Size:1109

Clone Sequence Records

BS17752.complete Sequence

1109 bp assembled on 2009-12-07

GenBank Submission: KX806234

> BS17752.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTAC
TTGTTCATCAAGGCCGCCCAGTCCTCGTATTTCGAGGACAAGAAGTACTA
CGACGAGGTGCTGGATGTGCTGTTGAAGAAGCCGAACTTTGAGTACCTGG
AGGTTAATGGCTCGCACCATGTGCACATGAACGATCCAGAGGCCATCATT
GCACCGGTCAACAACTTTATCCAGCGCTTCGGACCGGCGGCAGCGGCTGC
ATCCCGCCAGAAGGCCAAGGAGGCGAAGGAGAGCAAGCTTTAGAAGCTTT
CTAGACCAT

BS17752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1077 CG11309-PA 1..1077 17..1093 5385 100 Plus
CG11309-RF 1047 CG11309-PF 102..1047 148..1093 4730 100 Plus
CG11309-RE 1047 CG11309-PE 102..1047 148..1093 4730 100 Plus
CG11309-RF 1047 CG11309-PF 1..102 17..118 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1664 CG11309-RA 259..1335 17..1093 5385 100 Plus
CG11309-RF 2125 CG11309-RF 360..1305 148..1093 4730 100 Plus
CG11309-RE 1206 CG11309-RE 136..1081 148..1093 4730 100 Plus
CG11309-RF 2125 CG11309-RF 259..360 17..118 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302605..21303549 1093..149 4725 100 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 158..268 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:46:04 has no hits.

BS17752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:55 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 17..1093 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:25 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 254..1330 17..1093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:11 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 259..1335 17..1093 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:55 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 251..1332 14..1097 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:21 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 259..1335 17..1093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:21 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302605..21303549 149..1093 100 <- Minus
3L 21303808..21303837 119..148 100 <- Minus
3L 21303910..21304011 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:11 Download gff for BS17752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295705..21296649 149..1093 100 <- Minus
arm_3L 21296908..21296937 119..148 100 <- Minus
arm_3L 21297010..21297111 17..118 100   Minus

BS17752.3prime Sequence

901 bp (787 high quality bases) assembled on 2007-05-29

> BS17752.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTC
TGGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTT
GACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGC
CATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGC
ACCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTT
GATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCT
CCTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAG
AAGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCAT
TAAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGA
CCCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTC
CGGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGT
CCTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCC
CAATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAA
ATAATGGACGACATTGAGTGTCCAACCAGGGACACTTTCTCCCACTTGTA
CTGCTTCATGATCAGGCGGATCACATACAGATTATCCACGGAGTTGTAGT
AGCAGCCATCAGGCAGTCGGGACGATAGCCCGTGACCAGGAAGATCGATC
GCGAGGAATGCCACGTCCGGCGACAGCAGCGGCATCAGGCGATCAAAGGT
TCCCGCATTATCCTGCCACCCGTGCAGTCCTAAAATTGGTTGGACGTTCT
G

BS17752.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PB 1047 CG11309-RB 163..1047 901..17 4425 100 Minus
CG11309-PA 1077 CG11309-RA 193..1077 901..17 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 421..1305 901..17 4425 100 Minus
CG11309-RE 1206 CG11309-RE 197..1081 901..17 4425 100 Minus
CG11309-RD 1536 CG11309-RD 323..1207 901..17 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302605..21303489 17..901 4425 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:27:46 has no hits.

BS17752.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:43 Download gff for BS17752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PA 193..1077 17..901 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:14 Download gff for BS17752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 293..1179 13..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:16 Download gff for BS17752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 323..1209 13..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:16 Download gff for BS17752.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302603..21303489 13..901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:14 Download gff for BS17752.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295703..21296589 13..901 99   Plus

BS17752.5prime Sequence

882 bp (731 high quality bases) assembled on 2007-05-29

> BS17752.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACTCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTAC
TTGTTCATCAAGGCCGCCCAGTCCTCGTATTT

BS17752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PA 1077 CG11309-RA 1..866 17..882 4305 99.8 Plus
CG11309-PB 1047 CG11309-RB 102..836 148..882 3650 99.8 Plus
CG11309-PB 1047 CG11309-RB 1..102 17..118 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1664 CG11309-RA 259..1124 17..882 4315 99.9 Plus
CG11309-RF 2125 CG11309-RF 360..1094 148..882 3660 99.9 Plus
CG11309-RE 1206 CG11309-RE 136..870 148..882 3660 99.9 Plus
CG11309-RF 2125 CG11309-RF 259..360 17..118 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302816..21303549 882..149 3655 99.9 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 158..268 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-12 07:24:19 has no hits.

BS17752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:48 Download gff for BS17752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:43 Download gff for BS17752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 256..1124 14..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:42 Download gff for BS17752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 256..1124 14..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:42 Download gff for BS17752.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302816..21303549 149..882 99 <- Minus
3L 21303808..21303837 119..148 100 <- Minus
3L 21303910..21304014 14..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:43 Download gff for BS17752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295916..21296649 149..882 99 <- Minus
arm_3L 21296908..21296937 119..148 100 <- Minus
arm_3L 21297010..21297114 14..118 99   Minus

BS17752.pep Sequence

Translation from 16 to 1092

> BS17752.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPRANIWCSKKYFAEISI
TVPWGHISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAID
LPGHGLSSRLPDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICF
VFAAVFPDKVDMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSK
NEPPSYTYDELIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCR
DRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLD
VLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
KEAKESKL*

BS17752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PA 358 CG11309-PA 1..358 1..358 1924 100 Plus
CG11309-PF 348 CG11309-PF 1..348 1..358 1843 97.2 Plus
CG11309-PE 348 CG11309-PE 1..348 1..358 1843 97.2 Plus
CG11309-PD 348 CG11309-PD 1..348 1..358 1843 97.2 Plus
CG11309-PC 348 CG11309-PC 1..348 1..358 1843 97.2 Plus