Clone Sequence Records
BS17752.complete Sequence
1109 bp assembled on 2009-12-07
GenBank Submission: KX806234
> BS17752.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTAC
TTGTTCATCAAGGCCGCCCAGTCCTCGTATTTCGAGGACAAGAAGTACTA
CGACGAGGTGCTGGATGTGCTGTTGAAGAAGCCGAACTTTGAGTACCTGG
AGGTTAATGGCTCGCACCATGTGCACATGAACGATCCAGAGGCCATCATT
GCACCGGTCAACAACTTTATCCAGCGCTTCGGACCGGCGGCAGCGGCTGC
ATCCCGCCAGAAGGCCAAGGAGGCGAAGGAGAGCAAGCTTTAGAAGCTTT
CTAGACCAT
BS17752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RA | 1077 | CG11309-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
CG11309-RF | 1047 | CG11309-PF | 102..1047 | 148..1093 | 4730 | 100 | Plus |
CG11309-RE | 1047 | CG11309-PE | 102..1047 | 148..1093 | 4730 | 100 | Plus |
CG11309-RF | 1047 | CG11309-PF | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RA | 1664 | CG11309-RA | 259..1335 | 17..1093 | 5385 | 100 | Plus |
CG11309-RF | 2125 | CG11309-RF | 360..1305 | 148..1093 | 4730 | 100 | Plus |
CG11309-RE | 1206 | CG11309-RE | 136..1081 | 148..1093 | 4730 | 100 | Plus |
CG11309-RF | 2125 | CG11309-RF | 259..360 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302605..21303549 | 1093..149 | 4725 | 100 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 158..268 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:46:04 has no hits.
BS17752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:55 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 1..1077 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:25 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 254..1330 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:11 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 259..1335 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:55 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 251..1332 | 14..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:21 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 259..1335 | 17..1093 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:21 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302605..21303549 | 149..1093 | 100 | <- | Minus |
3L | 21303808..21303837 | 119..148 | 100 | <- | Minus |
3L | 21303910..21304011 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:11 Download gff for
BS17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295705..21296649 | 149..1093 | 100 | <- | Minus |
arm_3L | 21296908..21296937 | 119..148 | 100 | <- | Minus |
arm_3L | 21297010..21297111 | 17..118 | 100 | | Minus |
BS17752.3prime Sequence
901 bp (787 high quality bases) assembled on 2007-05-29
> BS17752.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTC
TGGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTT
GACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGC
CATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGC
ACCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTT
GATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCT
CCTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAG
AAGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCAT
TAAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGA
CCCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTC
CGGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGT
CCTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCC
CAATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAA
ATAATGGACGACATTGAGTGTCCAACCAGGGACACTTTCTCCCACTTGTA
CTGCTTCATGATCAGGCGGATCACATACAGATTATCCACGGAGTTGTAGT
AGCAGCCATCAGGCAGTCGGGACGATAGCCCGTGACCAGGAAGATCGATC
GCGAGGAATGCCACGTCCGGCGACAGCAGCGGCATCAGGCGATCAAAGGT
TCCCGCATTATCCTGCCACCCGTGCAGTCCTAAAATTGGTTGGACGTTCT
G
BS17752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PB | 1047 | CG11309-RB | 163..1047 | 901..17 | 4425 | 100 | Minus |
CG11309-PA | 1077 | CG11309-RA | 193..1077 | 901..17 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 421..1305 | 901..17 | 4425 | 100 | Minus |
CG11309-RE | 1206 | CG11309-RE | 197..1081 | 901..17 | 4425 | 100 | Minus |
CG11309-RD | 1536 | CG11309-RD | 323..1207 | 901..17 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302605..21303489 | 17..901 | 4425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:27:46 has no hits.
BS17752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:43 Download gff for
BS17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PA | 193..1077 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:14 Download gff for
BS17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 293..1179 | 13..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:16 Download gff for
BS17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 323..1209 | 13..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:16 Download gff for
BS17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302603..21303489 | 13..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:14 Download gff for
BS17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295703..21296589 | 13..901 | 99 | | Plus |
BS17752.5prime Sequence
882 bp (731 high quality bases) assembled on 2007-05-29
> BS17752.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACTCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTAC
TTGTTCATCAAGGCCGCCCAGTCCTCGTATTT
BS17752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PA | 1077 | CG11309-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
CG11309-PB | 1047 | CG11309-RB | 102..836 | 148..882 | 3650 | 99.8 | Plus |
CG11309-PB | 1047 | CG11309-RB | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RA | 1664 | CG11309-RA | 259..1124 | 17..882 | 4315 | 99.9 | Plus |
CG11309-RF | 2125 | CG11309-RF | 360..1094 | 148..882 | 3660 | 99.9 | Plus |
CG11309-RE | 1206 | CG11309-RE | 136..870 | 148..882 | 3660 | 99.9 | Plus |
CG11309-RF | 2125 | CG11309-RF | 259..360 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302816..21303549 | 882..149 | 3655 | 99.9 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 158..268 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:24:19 has no hits.
BS17752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:48 Download gff for
BS17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:43 Download gff for
BS17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 256..1124 | 14..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:42 Download gff for
BS17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 256..1124 | 14..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:42 Download gff for
BS17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302816..21303549 | 149..882 | 99 | <- | Minus |
3L | 21303808..21303837 | 119..148 | 100 | <- | Minus |
3L | 21303910..21304014 | 14..118 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:43 Download gff for
BS17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295916..21296649 | 149..882 | 99 | <- | Minus |
arm_3L | 21296908..21296937 | 119..148 | 100 | <- | Minus |
arm_3L | 21297010..21297114 | 14..118 | 99 | | Minus |
BS17752.pep Sequence
Translation from 16 to 1092
> BS17752.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPRANIWCSKKYFAEISI
TVPWGHISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAID
LPGHGLSSRLPDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICF
VFAAVFPDKVDMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSK
NEPPSYTYDELIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCR
DRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLD
VLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
KEAKESKL*
BS17752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PA | 358 | CG11309-PA | 1..358 | 1..358 | 1924 | 100 | Plus |
CG11309-PF | 348 | CG11309-PF | 1..348 | 1..358 | 1843 | 97.2 | Plus |
CG11309-PE | 348 | CG11309-PE | 1..348 | 1..358 | 1843 | 97.2 | Plus |
CG11309-PD | 348 | CG11309-PD | 1..348 | 1..358 | 1843 | 97.2 | Plus |
CG11309-PC | 348 | CG11309-PC | 1..348 | 1..358 | 1843 | 97.2 | Plus |