Clone Sequence Records
BS17754.3prime Sequence
886 bp (830 high quality bases) assembled on 2007-05-29
> BS17754.3prime
ATGGTCTAGAAAGCTTTTACAAATGCACTTTCAGAGATTCCATGCGACTG
ACAATACGACGTCGCAATTCGGCGTATCTTTCCTTTATTTTGGCCACTTC
GCGGGCCAGTTCCTGGTCGTAGCGCTCCAGAATAGCACGGCACTCGGGCA
AAGATAAATTCAAAAATTGAGCAACTTCATTACTGATTTCATCAGTTTTG
CGAGAATCCACTAAAAATATACGAGCCACATCCTCATGAGGTCCCAAAGT
GACGCGCGTTATCAAAGGATATTCGTCGTCCTTGAGACGTTTCTGTTCAC
CATTGTCGCGAACAATGAAGAGTGAAAAATTGCCAGGCGAACTGTCCACC
TTGTATTTCTCCAGCACCAAGTTGATAACCTCAGTGGTGGTCACCATCGA
GGAGACCCACACTGACATTTGAGAACCGTAGGGCGGCGTGAAAAACGACG
TCTCCCGATTGTAGTAGTGACCATTGATAGAGCACCGACGTTTCAGCTTG
GTACGAGAACGACGATTGCCACTTCGTCGCTTGATGGCAGAAGCTCCTGT
GCGTGGAGGTCTTCTCAGCACAACTCCATCTTCCGTCACATGCAACCCAG
CCGATCCATCTCCGTCTGGACCATCAACGCCCTCGCTTGCAGTGTACAAA
TCCTCGGTTTGCGTAAGCTCATCGCCGGCCGCTGCACCACTGGTTATGGA
TGGAGCATCTGCCCGACTTGACTCACCTTCGCTAGCAGCAGCCACATTCT
CTTTGGGATAACAGTCCATCTGGATTTGTATGTACCGCTGAGGTATGTCG
CTGCGTCGAATGGTGGCCATACGTTGGGGACGCAGCGTGGCCTCGTCGTC
GTCATCGCTGTCGGAGTACACAAAACAGCTGGGTCC
BS17754.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4656-PA | 2421 | CG4656-RA | 1552..2421 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rassf-RA | 3473 | CG4656-RA | 1945..2816 | 886..15 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23115352..23115728 | 510..886 | 1885 | 100 | Plus |
| 3R | 32079331 | 3R | 23114964..23115291 | 183..510 | 1640 | 100 | Plus |
| 3R | 32079331 | 3R | 23114799..23114906 | 78..185 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 23114671..23114735 | 15..79 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:43:39 has no hits.
BS17754.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:01 Download gff for
BS17754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4656-PA | 1552..2421 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:49 Download gff for
BS17754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 1945..2816 | 15..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:17:48 Download gff for
BS17754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 1945..2816 | 15..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:17:48 Download gff for
BS17754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23114671..23114733 | 15..77 | 100 | <- | Plus |
| 3R | 23114799..23114903 | 78..182 | 100 | <- | Plus |
| 3R | 23114964..23115290 | 183..509 | 100 | <- | Plus |
| 3R | 23115352..23115728 | 510..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:49 Download gff for
BS17754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18940393..18940455 | 15..77 | 100 | <- | Plus |
| arm_3R | 18940521..18940625 | 78..182 | 100 | <- | Plus |
| arm_3R | 18940686..18941012 | 183..509 | 100 | <- | Plus |
| arm_3R | 18941074..18941450 | 510..886 | 100 | | Plus |
BS17754.complete Sequence
2453 bp assembled on 2010-06-24
GenBank Submission: KX802511
> BS17754.complete
GAAGTTATCAGTCGACATGTGGAAGTGCCACAAGTGCGGCAAACCCGTTT
ACTTCGCGGAACGTAAACAATCGATCGGCTACGATTGGCATCCGGAATGT
TTGCGCTGCGAGGAATGCGGCAAACGCTTAAATCCCGGCCAGCATGCTGA
GCACAAAAGTGTGCCCTACTGCCATGTGCCCTGCTATGGCGCCCTGTTTG
GACCCCAGTTGTTTGGCCACGGCACCCGGGTGGAATCGCACAAAAGCTAT
GGGGTGAAGGGAGCCCAGAAGCCAACCGGAGCTCAGGCCAATGGCCCGCC
ACTCCCACGTGATCACCTGGAGTCCAAACTTAAGGTCTACAACCAATTCT
ACGACAACAAAAGCCTGGAGATACGTAGTCGTGAGGTCAACAACCGGTTG
GTGCTGGAAGGCGCGCTTAGAGTTTACTGGGGCGTGCAGGGAGTGATTCA
TCTCAAGGAGGACGATGATCAGCGCATCTTAGTGCGCAAAAGGAACTCTT
GCCGTGTGTCCAAGGCTGCCAATGAAAGCAGTTCGGATAAGGAAAACGAA
GCTAGCGAATCGCTGGCTCCGCCCACCACCACCACAGCCGAGGTCGATCA
ACTATCCACGGATGTTTCCCTTTCCGAGAGCATGACCTTCGACTCCTGTA
GCCTGAACGAGATCTCCGAGTTGCCCACAACCCCAGAAGATGCCTCGGCC
AACACCACAGCCAACAGCAAAGAGCAGACCAATGGTAATGTGTGCAACGA
CGACGAGGATACGACCACGACGGACTCATCTGGAACCCTGGTGGAGGCTC
CTACTGCCAGCACAAGTTGTGTGTCCAGCACATTGCCTTCGAAGTTGGAC
CGTCTGGAAAAACTGGATTGGGACGACATAGACGATCTGCTGCAGGTAGA
GAGACGTCACAACGACAAGGATCGCATTTATGAAACTATGCCTGTCAAAC
TGCCGTCGTCGCAATCCTCCAGCGACAGTTCGCCCAGCAAAACATCCACA
GAGACCACTACGACCACTGAATCAAGCTCGACTCAATCGGCATCAACAAA
CACCAGCAGCACGGATGATTTTATGACCGCCACGGGATCGTTGACTGCCA
ACACCAATACGCAGAATACAACAACGGTGTCTACTACTGAGACCTCTCTG
GATAACTTCGAGACTTGCGATGACGCTACCCTGAAGCCTATTGATTTCGA
GGACTTTAAGCGTAGTGTCCACCAGGACTATGTAAATGGGGCCAACTCCT
TTACGGAGCCCAATGAGGGCACCCTTAAGCGTAATCAACCAATTGATCCC
TCTCGCATTCACGACTCCCTTAAGCTCTACGGCGAGAATTCAGCGATGAG
CAAAAGCTTTAATTGTGAGCATGCATTGCGGTCAATAGATCCCACTTTAA
TCAACGACACCATGAATCTGCGCAGTAGTGTGGGCTCTCCTCACTCCGCA
CAGCGTCAGTACGCCTTACAAAAGAGTGGATCGGCCACAGTAACCAGCAG
GGATCAAAAGAAGCCATATCAACAGGGGCGGCAGTTGTTCGAAAAGGGCA
TCAACCGCTCCAAATCGGGACCCAGCTGTTTTGTGTACTCCGACAGCGAT
GACGACGACGAGGCCACGCTGCGTCCCCAACGTATGGCCACCATTCGACG
CAGCGACATACCTCAGCGGTACATACAAATCCAGATGGACTGTTATCCCA
AAGAGAATGTGGCTGCTGCTAGCGAAGGTGAGTCAAGTCGGGCAGATGCT
CCATCCATAACCAGTGGTGCAGCGGCCGGCGATGAGCTTACGCAAACCGA
GGATTTGTACACTGCAAGCGAGGGCGTTGATGGTCCAGACGGAGATGGAT
CGGCTGGGTTGCATGTGACGGAAGATGGAGTTGTGCTGAGAAGACCTCCA
CGCACAGGAGCTTCTGCCATCAAGCGACGAAGTGGCAATCGTCGTTCTCG
TACCAAGCTGAAACGTCGGTGCTCTATCAATGGTCACTACTACAATCGGG
AGACGTCGTTTTTCACGCCGCCCTACGGTTCTCAAATGTCAGTGTGGGTC
TCCTCGATGGTGACCACCACTGAGGTTATCAACTTGGTGCTGGAGAAATA
CAAGGTGGACAGTTCGCCTGGCAATTTTTCACTCTTCATTGTTCGCGACA
ATGGTGAACAGAAACGTCTCAAGGACGACGAATATCCTTTGATAACGCGC
GTCACTTTGGGACCTCATGAGGATGTGGCTCGTATATTTTTAGTGGATTC
TCGCAAAACTGATGAAATCAGTAATGAAGTTGCTCAATTTTTGAATTTAT
CTTTGCCCGAGTGCCGTGCTATTCTGGAGCGCTACGACCAGGAACTGGCC
CGCGAAGTGGCCAAAATAAAGGAAAGATACGCCGAATTGCGACGTCGTAT
TGTCAGTCGCATGGAATCTCTGAAAGTGCATTTGTAAAAGCTTTCTAGAC
CAT
BS17754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rassf-RA | 2421 | CG4656-PA | 1..2421 | 17..2437 | 12105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rassf-RA | 3473 | CG4656-RA | 394..2816 | 17..2439 | 12115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23115352..23116772 | 1944..524 | 7105 | 100 | Minus |
| 3R | 32079331 | 3R | 23114964..23115291 | 2271..1944 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 23116820..23117016 | 529..333 | 970 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23117079..23117265 | 336..150 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 23114799..23114906 | 2376..2269 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 23117330..23117425 | 151..56 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 23114671..23114735 | 2439..2375 | 325 | 100 | Minus |
| 3R | 32079331 | 3R | 23117499..23117538 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:39:50 has no hits.
BS17754.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 16:52:10 Download gff for
BS17754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 414..2832 | 17..2435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:21 Download gff for
BS17754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 394..2812 | 17..2435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:31 Download gff for
BS17754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 394..2812 | 17..2435 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:31 Download gff for
BS17754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23114675..23114733 | 2377..2435 | 100 | <- | Minus |
| 3R | 23114799..23114903 | 2272..2376 | 100 | <- | Minus |
| 3R | 23114964..23115290 | 1945..2271 | 100 | <- | Minus |
| 3R | 23115352..23116772 | 524..1944 | 100 | <- | Minus |
| 3R | 23116826..23117014 | 335..523 | 100 | <- | Minus |
| 3R | 23117081..23117263 | 152..334 | 100 | <- | Minus |
| 3R | 23117330..23117424 | 57..151 | 100 | <- | Minus |
| 3R | 23117499..23117538 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:21 Download gff for
BS17754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18940397..18940455 | 2377..2435 | 100 | <- | Minus |
| arm_3R | 18940521..18940625 | 2272..2376 | 100 | <- | Minus |
| arm_3R | 18940686..18941012 | 1945..2271 | 100 | <- | Minus |
| arm_3R | 18941074..18942494 | 524..1944 | 100 | <- | Minus |
| arm_3R | 18942548..18942736 | 335..523 | 100 | <- | Minus |
| arm_3R | 18942803..18942985 | 152..334 | 100 | <- | Minus |
| arm_3R | 18943052..18943146 | 57..151 | 100 | <- | Minus |
| arm_3R | 18943221..18943260 | 17..56 | 100 | | Minus |
BS17754.pep Sequence
Translation from 16 to 2436
> BS17754.pep
MWKCHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVP
YCHVPCYGALFGPQLFGHGTRVESHKSYGVKGAQKPTGAQANGPPLPRDH
LESKLKVYNQFYDNKSLEIRSREVNNRLVLEGALRVYWGVQGVIHLKEDD
DQRILVRKRNSCRVSKAANESSSDKENEASESLAPPTTTTAEVDQLSTDV
SLSESMTFDSCSLNEISELPTTPEDASANTTANSKEQTNGNVCNDDEDTT
TTDSSGTLVEAPTASTSCVSSTLPSKLDRLEKLDWDDIDDLLQVERRHND
KDRIYETMPVKLPSSQSSSDSSPSKTSTETTTTTESSSTQSASTNTSSTD
DFMTATGSLTANTNTQNTTTVSTTETSLDNFETCDDATLKPIDFEDFKRS
VHQDYVNGANSFTEPNEGTLKRNQPIDPSRIHDSLKLYGENSAMSKSFNC
EHALRSIDPTLINDTMNLRSSVGSPHSAQRQYALQKSGSATVTSRDQKKP
YQQGRQLFEKGINRSKSGPSCFVYSDSDDDDEATLRPQRMATIRRSDIPQ
RYIQIQMDCYPKENVAAASEGESSRADAPSITSGAAAGDELTQTEDLYTA
SEGVDGPDGDGSAGLHVTEDGVVLRRPPRTGASAIKRRSGNRRSRTKLKR
RCSINGHYYNRETSFFTPPYGSQMSVWVSSMVTTTEVINLVLEKYKVDSS
PGNFSLFIVRDNGEQKRLKDDEYPLITRVTLGPHEDVARIFLVDSRKTDE
ISNEVAQFLNLSLPECRAILERYDQELAREVAKIKERYAELRRRIVSRME
SLKVHL*
BS17754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rassf-PA | 806 | CG4656-PA | 1..806 | 1..806 | 4197 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 398..882 | 149..619 | 192 | 20.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 500..979 | 149..613 | 184 | 19.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 559..1068 | 73..602 | 176 | 19.2 | Plus |
| CG42525-PB | 377 | CG42525-PB | 88..300 | 187..395 | 167 | 28.4 | Plus |
| CG42525-PA | 419 | CG42525-PA | 107..342 | 168..395 | 165 | 25.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 324..516 | 185..377 | 165 | 23.8 | Plus |
| CG42525-PB | 377 | CG42525-PB | 117..311 | 165..377 | 159 | 28 | Plus |
| CG42525-PA | 419 | CG42525-PA | 159..353 | 165..377 | 159 | 28 | Plus |
