Clone Sequence Records
BS17762.complete Sequence
1571 bp assembled on 2009-12-07
GenBank Submission: KX802998
> BS17762.complete
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCCTGGCACGCGTTTGACCCTGGAGAAAACCCTGGATCACAAATGG
TGCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGGTGGACTC
GGCGGCTGCCCTGGAGATATGCTCGCCAAAGGCTAAGAGGCAGCGTCTGC
AGTCTAGTGCCCACTTGAGCAATGGCCTGGATGACTCCATCTCCCGGAAC
TACTGCTCTCAACCCATGCCCACAATGCGCAGCGACGATGACTTCAATGT
CAGACTGGGCAGTGGCCGATCCAAGGAGGATGGAGGCGACCGCCAGACGT
TGGCCCAGGAGGCTCGGCTCAGTTACTCCTTCTCGCAACCAGCTTTGCTT
GATGATCTCCTACTGGCTACCCAGATGAACCAAACGCAGAACGCTTCCCA
GAACTATTTCCAGCGTTTGGTGAGGAGAATGACCCGATTCTTTGTGACCA
CACGATGGGATGACACTATCAAGCGATTGGTGGGAACCATCGAAAGACTG
GGTGGTTATACGTGCAAATTTGGTGACGACGGAGTGGTCACCGTATCCAC
AGTCGATCGGAATAAGCTGCGATTGGTTTTCAAGGCACACATTATAGAGA
TGGATGGCAAGATTCTTGTTGACTGCCGGCTGTCAAAGGGTTGCGGCTTG
GAGTTTAAACGACGATTTATCAAGATCAAAAACGCCCTGGAGGATATCGT
GCTTAAAGGACCCACCACCTGGCCGATTGCGATTGCTACAAATTCGGTGC
CTTAGAAGCTTTCTAGACCAT
BS17762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RA | 1539 | CG17161-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
grp-RB | 1539 | CG17161-PB | 1..1539 | 17..1555 | 7695 | 100 | Plus |
grp-RC | 1539 | CG17161-PC | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RA | 2563 | CG17161-RA | 739..2278 | 16..1555 | 7700 | 100 | Plus |
grp-RB | 2234 | CG17161-RB | 410..1949 | 16..1555 | 7700 | 100 | Plus |
grp-RC | 2344 | CG17161-RC | 520..2059 | 16..1555 | 7700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16698961..16699641 | 875..1555 | 3405 | 100 | Plus |
2L | 23513712 | 2L | 16691901..16692124 | 121..344 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 16698138..16698348 | 665..875 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 16696583..16696764 | 343..524 | 910 | 100 | Plus |
2L | 23513712 | 2L | 16697499..16697643 | 521..665 | 725 | 100 | Plus |
2L | 23513712 | 2L | 16691088..16691193 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:45:56 has no hits.
BS17762.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:56 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 1..1539 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:33 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 944..2498 | 9..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:07 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 521..2059 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:56 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 944..2498 | 9..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:18 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 521..2059 | 17..1555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:18 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16698139..16698348 | 666..875 | 100 | -> | Plus |
2L | 16691089..16691192 | 17..120 | 100 | -> | Plus |
2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
2L | 16698962..16699641 | 876..1555 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:07 Download gff for
BS17762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16691089..16691192 | 17..120 | 100 | -> | Plus |
arm_2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
arm_2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
arm_2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
arm_2L | 16698139..16698348 | 666..875 | 100 | -> | Plus |
arm_2L | 16698962..16699641 | 876..1555 | 100 | | Plus |
BS17762.3prime Sequence
855 bp (786 high quality bases) assembled on 2007-05-29
> BS17762.3prime
ATGGTCTAGAAAGCTTCTAAGGCACCGAATTTGTAGCAATCGCAATCGGC
CAGGTGGTGGGTCCTTTAAGCACGATATCCTCCAGGGCGTTTTTGATCTT
GATAAATCGTCGTTTAAACTCCAAGCCGCAACCCTTTGACAGCCGGCAGT
CAACAAGAATCTTGCCATCCATCTCTATAATGTGTGCCTTGAAAACCAAT
CGCAGCTTATTCCGATCGACTGTGGATACGGTGACCACTCCGTCGTCACC
AAATTTGCACGTATAACCACCCAGTCTTTCGATGGTTCCCACCAATCGCT
TGATAGTGTCATCCCATCGTGTGGTCACAAAGAATCGGGTCATTCTCCTC
ACCAAACGCTGGAAATAGTTCTGGGAAGCGTTCTGCGTTTGGTTCATCTG
GGTAGCCAGTAGGAGATCATCAAGCAAAGCTGGTTGCGAGAAGGAGTAAC
TGAGCCGAGCCTCCTGGGCCAACGTCTGGCGGTCGCCTCCATCCTCCTTG
GATCGGCCACTGCCCAGTCTGACATTGAAGTCATCGTCGCTGCGCATTGT
GGGCATGGGTTGAGAGCAGTAGTTCCGGGAGATGGAGTCATCCAGGCCAT
TGCTCAAGTGGGCACTAGACTGCAGACGCTGCCTCTTAGCCTTTGGCGAG
CATATCTCCAGGGCAGCCGCCGAGTCCACCAGGTCATAGGAACGTTCATT
GTCTGCAAACTGCATGTTGCACCATTTGTGATCCAGGGTTTTCTCCAGGG
TCAAACGCGTGCCAGGACTGGTGGCCAGCAGCTTGCGAAGCAGCGAAATA
GCCAAGGTGTCAAGTTTGCTCCAAGGAGTCTGCAGTTGCCAGTGATCGTT
ATCCC
BS17762.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17161-PD | 1197 | grp-RD | 359..1197 | 855..17 | 4170 | 99.8 | Minus |
CG17161-PB | 1539 | grp-RB | 701..1539 | 855..17 | 4170 | 99.8 | Minus |
CG17161-PC | 1539 | grp-RC | 701..1539 | 855..17 | 4170 | 99.8 | Minus |
CG17161-PA | 1539 | grp-RA | 701..1539 | 855..17 | 4170 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RF | 2010 | CG17161-RF | 887..1725 | 855..17 | 4180 | 99.9 | Minus |
grp-RD | 1649 | CG17161-RD | 526..1364 | 855..17 | 4180 | 99.9 | Minus |
grp-RA | 2563 | CG17161-RA | 1440..2278 | 855..17 | 4180 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16698961..16699641 | 697..17 | 3405 | 100 | Minus |
2L | 23513712 | 2L | 16698190..16698348 | 855..697 | 780 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:43:51 has no hits.
BS17762.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:55 Download gff for
BS17762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17161-PA | 701..1539 | 17..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:55 Download gff for
BS17762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 1440..2285 | 6..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:37 Download gff for
BS17762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 1440..2285 | 6..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:37 Download gff for
BS17762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16698190..16698348 | 697..855 | 99 | -> | Minus |
2L | 16698962..16699648 | 6..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:55 Download gff for
BS17762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16698190..16698348 | 697..855 | 99 | -> | Minus |
arm_2L | 16698962..16699648 | 6..696 | 99 | | Minus |
BS17762.5prime Sequence
946 bp (805 high quality bases) assembled on 2007-05-29
> BS17762.5prime
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCCTGGCACGCGTTTGACCCTGGAGAAACCCTGGATCACAAATGGT
GCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGGTGGACTCG
GCGGCTGCCCTGGAGATATGCTCGCCAAAGGCTAAGAGGCAGCGTC
BS17762.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17161-PB | 1539 | grp-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
CG17161-PC | 1539 | grp-RC | 1..816 | 17..832 | 4080 | 100 | Plus |
CG17161-PA | 1539 | grp-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
CG17161-PD | 1197 | grp-RD | 1..474 | 359..832 | 2370 | 100 | Plus |
CG17161-PB | 1539 | grp-RB | 815..931 | 830..946 | 585 | 100 | Plus |
CG17161-PC | 1539 | grp-RC | 815..931 | 830..946 | 585 | 100 | Plus |
CG17161-PA | 1539 | grp-RA | 815..931 | 830..946 | 585 | 100 | Plus |
CG17161-PD | 1197 | grp-RD | 473..589 | 830..946 | 585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RA | 2563 | CG17161-RA | 739..1670 | 16..946 | 4635 | 99.9 | Plus |
grp-RB | 2234 | CG17161-RB | 410..1341 | 16..946 | 4635 | 99.9 | Plus |
grp-RC | 2344 | CG17161-RC | 520..1451 | 16..946 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16691901..16692124 | 121..344 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 16698138..16698348 | 665..874 | 1005 | 99.5 | Plus |
2L | 23513712 | 2L | 16696583..16696764 | 343..524 | 910 | 100 | Plus |
2L | 23513712 | 2L | 16697499..16697643 | 521..665 | 725 | 100 | Plus |
2L | 23513712 | 2L | 16691088..16691193 | 16..121 | 530 | 100 | Plus |
2L | 23513712 | 2L | 16698961..16699033 | 874..946 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:15:55 has no hits.
BS17762.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:01 Download gff for
BS17762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17161-PA | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:16 Download gff for
BS17762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 512..1451 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:00 Download gff for
BS17762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 512..1451 | 9..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:00 Download gff for
BS17762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16698139..16698348 | 666..874 | 99 | -> | Plus |
2L | 16698962..16699033 | 875..946 | 100 | | Plus |
2L | 16691080..16691192 | 9..120 | 97 | -> | Plus |
2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:16 Download gff for
BS17762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16691080..16691192 | 9..120 | 97 | -> | Plus |
arm_2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
arm_2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
arm_2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
arm_2L | 16698139..16698348 | 666..874 | 99 | -> | Plus |
arm_2L | 16698962..16699033 | 875..946 | 100 | | Plus |
BS17762.pep Sequence
Translation from 16 to 1554
> BS17762.pep
MAATLTEAGTGPAATREFVEGWTLAQTLGEGAYGEVKLLINRQTGEAVAM
KMVDLKKHPDAANSVRKEVCIQKMLQDKHILRFFGKRSQGSVEYIFLEYA
AGGELFDRIEPDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRDLKPENLL
LDEHDNVKISDFGMATMFRCKGKERLLDKRCGTLPYVAPEVLQKAYHAQP
ADLWSCGVILVTMLAGELPWDQPSTNCTEFTNWRDNDHWQLQTPWSKLDT
LAISLLRKLLATSPGTRLTLEKTLDHKWCNMQFADNERSYDLVDSAAALE
ICSPKAKRQRLQSSAHLSNGLDDSISRNYCSQPMPTMRSDDDFNVRLGSG
RSKEDGGDRQTLAQEARLSYSFSQPALLDDLLLATQMNQTQNASQNYFQR
LVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRNK
LRLVFKAHIIEMDGKILVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGPT
TWPIAIATNSVP*
BS17762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-PA | 512 | CG17161-PA | 1..512 | 1..512 | 2688 | 100 | Plus |
grp-PB | 512 | CG17161-PB | 1..512 | 1..512 | 2688 | 100 | Plus |
grp-PC | 512 | CG17161-PC | 1..512 | 1..512 | 2688 | 100 | Plus |
grp-PF | 398 | CG17161-PF | 1..398 | 115..512 | 2105 | 100 | Plus |
grp-PD | 398 | CG17161-PD | 1..398 | 115..512 | 2105 | 100 | Plus |