Clone BS17762 Report

Search the DGRC for BS17762

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptgrp-RA
Protein status:BS17762.pep: full length peptide match
Sequenced Size:1571

Clone Sequence Records

BS17762.complete Sequence

1571 bp assembled on 2009-12-07

GenBank Submission: KX802998

> BS17762.complete
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCCTGGCACGCGTTTGACCCTGGAGAAAACCCTGGATCACAAATGG
TGCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGGTGGACTC
GGCGGCTGCCCTGGAGATATGCTCGCCAAAGGCTAAGAGGCAGCGTCTGC
AGTCTAGTGCCCACTTGAGCAATGGCCTGGATGACTCCATCTCCCGGAAC
TACTGCTCTCAACCCATGCCCACAATGCGCAGCGACGATGACTTCAATGT
CAGACTGGGCAGTGGCCGATCCAAGGAGGATGGAGGCGACCGCCAGACGT
TGGCCCAGGAGGCTCGGCTCAGTTACTCCTTCTCGCAACCAGCTTTGCTT
GATGATCTCCTACTGGCTACCCAGATGAACCAAACGCAGAACGCTTCCCA
GAACTATTTCCAGCGTTTGGTGAGGAGAATGACCCGATTCTTTGTGACCA
CACGATGGGATGACACTATCAAGCGATTGGTGGGAACCATCGAAAGACTG
GGTGGTTATACGTGCAAATTTGGTGACGACGGAGTGGTCACCGTATCCAC
AGTCGATCGGAATAAGCTGCGATTGGTTTTCAAGGCACACATTATAGAGA
TGGATGGCAAGATTCTTGTTGACTGCCGGCTGTCAAAGGGTTGCGGCTTG
GAGTTTAAACGACGATTTATCAAGATCAAAAACGCCCTGGAGGATATCGT
GCTTAAAGGACCCACCACCTGGCCGATTGCGATTGCTACAAATTCGGTGC
CTTAGAAGCTTTCTAGACCAT

BS17762.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RA 1539 CG17161-PA 1..1539 17..1555 7695 100 Plus
grp-RB 1539 CG17161-PB 1..1539 17..1555 7695 100 Plus
grp-RC 1539 CG17161-PC 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RA 2563 CG17161-RA 739..2278 16..1555 7700 100 Plus
grp-RB 2234 CG17161-RB 410..1949 16..1555 7700 100 Plus
grp-RC 2344 CG17161-RC 520..2059 16..1555 7700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16698961..16699641 875..1555 3405 100 Plus
2L 23513712 2L 16691901..16692124 121..344 1120 100 Plus
2L 23513712 2L 16698138..16698348 665..875 1055 100 Plus
2L 23513712 2L 16696583..16696764 343..524 910 100 Plus
2L 23513712 2L 16697499..16697643 521..665 725 100 Plus
2L 23513712 2L 16691088..16691193 16..121 530 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:45:56 has no hits.

BS17762.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:56 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RA 1..1539 17..1555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:33 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RA 944..2498 9..1566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:07 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RC 521..2059 17..1555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:56 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RA 944..2498 9..1566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:18 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RC 521..2059 17..1555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:18 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16698139..16698348 666..875 100 -> Plus
2L 16691089..16691192 17..120 100 -> Plus
2L 16691901..16692124 121..344 100 -> Plus
2L 16696585..16696762 345..522 100 -> Plus
2L 16697501..16697643 523..665 100 -> Plus
2L 16698962..16699641 876..1555 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:07 Download gff for BS17762.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16691089..16691192 17..120 100 -> Plus
arm_2L 16691901..16692124 121..344 100 -> Plus
arm_2L 16696585..16696762 345..522 100 -> Plus
arm_2L 16697501..16697643 523..665 100 -> Plus
arm_2L 16698139..16698348 666..875 100 -> Plus
arm_2L 16698962..16699641 876..1555 100   Plus

BS17762.3prime Sequence

855 bp (786 high quality bases) assembled on 2007-05-29

> BS17762.3prime
ATGGTCTAGAAAGCTTCTAAGGCACCGAATTTGTAGCAATCGCAATCGGC
CAGGTGGTGGGTCCTTTAAGCACGATATCCTCCAGGGCGTTTTTGATCTT
GATAAATCGTCGTTTAAACTCCAAGCCGCAACCCTTTGACAGCCGGCAGT
CAACAAGAATCTTGCCATCCATCTCTATAATGTGTGCCTTGAAAACCAAT
CGCAGCTTATTCCGATCGACTGTGGATACGGTGACCACTCCGTCGTCACC
AAATTTGCACGTATAACCACCCAGTCTTTCGATGGTTCCCACCAATCGCT
TGATAGTGTCATCCCATCGTGTGGTCACAAAGAATCGGGTCATTCTCCTC
ACCAAACGCTGGAAATAGTTCTGGGAAGCGTTCTGCGTTTGGTTCATCTG
GGTAGCCAGTAGGAGATCATCAAGCAAAGCTGGTTGCGAGAAGGAGTAAC
TGAGCCGAGCCTCCTGGGCCAACGTCTGGCGGTCGCCTCCATCCTCCTTG
GATCGGCCACTGCCCAGTCTGACATTGAAGTCATCGTCGCTGCGCATTGT
GGGCATGGGTTGAGAGCAGTAGTTCCGGGAGATGGAGTCATCCAGGCCAT
TGCTCAAGTGGGCACTAGACTGCAGACGCTGCCTCTTAGCCTTTGGCGAG
CATATCTCCAGGGCAGCCGCCGAGTCCACCAGGTCATAGGAACGTTCATT
GTCTGCAAACTGCATGTTGCACCATTTGTGATCCAGGGTTTTCTCCAGGG
TCAAACGCGTGCCAGGACTGGTGGCCAGCAGCTTGCGAAGCAGCGAAATA
GCCAAGGTGTCAAGTTTGCTCCAAGGAGTCTGCAGTTGCCAGTGATCGTT
ATCCC

BS17762.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17161-PD 1197 grp-RD 359..1197 855..17 4170 99.8 Minus
CG17161-PB 1539 grp-RB 701..1539 855..17 4170 99.8 Minus
CG17161-PC 1539 grp-RC 701..1539 855..17 4170 99.8 Minus
CG17161-PA 1539 grp-RA 701..1539 855..17 4170 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RF 2010 CG17161-RF 887..1725 855..17 4180 99.9 Minus
grp-RD 1649 CG17161-RD 526..1364 855..17 4180 99.9 Minus
grp-RA 2563 CG17161-RA 1440..2278 855..17 4180 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16698961..16699641 697..17 3405 100 Minus
2L 23513712 2L 16698190..16698348 855..697 780 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 15:43:51 has no hits.

BS17762.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:55 Download gff for BS17762.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17161-PA 701..1539 17..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:55 Download gff for BS17762.3prime
Subject Subject Range Query Range Percent Splice Strand
grp-RA 1440..2285 6..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:37 Download gff for BS17762.3prime
Subject Subject Range Query Range Percent Splice Strand
grp-RA 1440..2285 6..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:37 Download gff for BS17762.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16698190..16698348 697..855 99 -> Minus
2L 16698962..16699648 6..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:55 Download gff for BS17762.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16698190..16698348 697..855 99 -> Minus
arm_2L 16698962..16699648 6..696 99   Minus

BS17762.5prime Sequence

946 bp (805 high quality bases) assembled on 2007-05-29

> BS17762.5prime
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCCTGGCACGCGTTTGACCCTGGAGAAACCCTGGATCACAAATGGT
GCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGGTGGACTCG
GCGGCTGCCCTGGAGATATGCTCGCCAAAGGCTAAGAGGCAGCGTC

BS17762.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17161-PB 1539 grp-RB 1..816 17..832 4080 100 Plus
CG17161-PC 1539 grp-RC 1..816 17..832 4080 100 Plus
CG17161-PA 1539 grp-RA 1..816 17..832 4080 100 Plus
CG17161-PD 1197 grp-RD 1..474 359..832 2370 100 Plus
CG17161-PB 1539 grp-RB 815..931 830..946 585 100 Plus
CG17161-PC 1539 grp-RC 815..931 830..946 585 100 Plus
CG17161-PA 1539 grp-RA 815..931 830..946 585 100 Plus
CG17161-PD 1197 grp-RD 473..589 830..946 585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RA 2563 CG17161-RA 739..1670 16..946 4635 99.9 Plus
grp-RB 2234 CG17161-RB 410..1341 16..946 4635 99.9 Plus
grp-RC 2344 CG17161-RC 520..1451 16..946 4635 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16691901..16692124 121..344 1120 100 Plus
2L 23513712 2L 16698138..16698348 665..874 1005 99.5 Plus
2L 23513712 2L 16696583..16696764 343..524 910 100 Plus
2L 23513712 2L 16697499..16697643 521..665 725 100 Plus
2L 23513712 2L 16691088..16691193 16..121 530 100 Plus
2L 23513712 2L 16698961..16699033 874..946 365 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:15:55 has no hits.

BS17762.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:01 Download gff for BS17762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17161-PA 1..931 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:16 Download gff for BS17762.5prime
Subject Subject Range Query Range Percent Splice Strand
grp-RC 512..1451 9..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:00 Download gff for BS17762.5prime
Subject Subject Range Query Range Percent Splice Strand
grp-RC 512..1451 9..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:00 Download gff for BS17762.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16698139..16698348 666..874 99 -> Plus
2L 16698962..16699033 875..946 100   Plus
2L 16691080..16691192 9..120 97 -> Plus
2L 16691901..16692124 121..344 100 -> Plus
2L 16696585..16696762 345..522 100 -> Plus
2L 16697501..16697643 523..665 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:16 Download gff for BS17762.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16691080..16691192 9..120 97 -> Plus
arm_2L 16691901..16692124 121..344 100 -> Plus
arm_2L 16697501..16697643 523..665 100 -> Plus
arm_2L 16696585..16696762 345..522 100 -> Plus
arm_2L 16698139..16698348 666..874 99 -> Plus
arm_2L 16698962..16699033 875..946 100   Plus

BS17762.pep Sequence

Translation from 16 to 1554

> BS17762.pep
MAATLTEAGTGPAATREFVEGWTLAQTLGEGAYGEVKLLINRQTGEAVAM
KMVDLKKHPDAANSVRKEVCIQKMLQDKHILRFFGKRSQGSVEYIFLEYA
AGGELFDRIEPDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRDLKPENLL
LDEHDNVKISDFGMATMFRCKGKERLLDKRCGTLPYVAPEVLQKAYHAQP
ADLWSCGVILVTMLAGELPWDQPSTNCTEFTNWRDNDHWQLQTPWSKLDT
LAISLLRKLLATSPGTRLTLEKTLDHKWCNMQFADNERSYDLVDSAAALE
ICSPKAKRQRLQSSAHLSNGLDDSISRNYCSQPMPTMRSDDDFNVRLGSG
RSKEDGGDRQTLAQEARLSYSFSQPALLDDLLLATQMNQTQNASQNYFQR
LVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRNK
LRLVFKAHIIEMDGKILVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGPT
TWPIAIATNSVP*

BS17762.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
grp-PA 512 CG17161-PA 1..512 1..512 2688 100 Plus
grp-PB 512 CG17161-PB 1..512 1..512 2688 100 Plus
grp-PC 512 CG17161-PC 1..512 1..512 2688 100 Plus
grp-PF 398 CG17161-PF 1..398 115..512 2105 100 Plus
grp-PD 398 CG17161-PD 1..398 115..512 2105 100 Plus