Clone Sequence Records
BS17763.3prime Sequence
895 bp (690 high quality bases) assembled on 2007-05-29
> BS17763.3prime
ATGGTCTAGAAAGCTTTCAGTTTAATAAGTGCATCCTCCTACCTATATAC
TCCTCATCGTCATCATCATTATCTCCACCTCCATCAGACCTGGAGGAGCT
GTTGTCTATGCTTAGGCGGCCCAACCTGCGTAACTTGAGCCTTCCGACCA
CAGGCGTACCGTTGCATGAGCGGCGCCTAACCCGCTCGCGCGAGCCTCCA
GAAGATGACGAGAAGAGCGGCGTGGAGGTCAGTGCTATGTCCTCCAGCAC
ATTGCCAGTGGCATCCACACGCTGCAGTCGTGTCGGTTTCGGAGCTCCTC
TCGATGAAAGCGAACCGAAAGTAGACCGACGTGATGGACCCCCGGGGCTG
CCCAGAATCTCGACGGCCTCGCTGAAGGATACCGCCTTCTTGGGATACAC
CTTCCTGACAACTCCGTCGCCAATGGGAGGCGGTTTGCAGTCAGGCCACT
TGGCACTTGGTAAACGCGTCCTCCTCACCTTCACCACACAGCCAAAGAAA
TGCGCGCCATAACGCTTAACCAAATCCGGATCGGTGTTGCGTCCGCGACT
GGATAATCTCTTCGCCTTGATCTTGGGCTTGGGACTTCGCTTCAGTGCGG
AGTGTGTGCTTTCAGAACTCTTGGCCAAACTGGGCGGCGGTGTATGAGCG
CGCAACGAGTGGTTCAGAGCACGCTTTTTGGCGCCATTCTGCAAAGGAAC
TTTGATGTGGAAATTGGTCTGCGCTGTTGATGACTTTTGTTTCTTAGGTG
ACGTTTTTCTCTTTTTGTGCCTGCTACGGCCACTAGTACCGCTCTGGTTA
ACGATCTCGGGCACATTGATAAATGATGATTTGGCCAAAGATTCGACGGG
CGAATCGATTTCTGTCTGGTTCAGGCGACGTAATAACACCCGCAC
BS17763.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1745-PA | 1347 | CG1745-RA | 469..1347 | 895..17 | 4295 | 99.5 | Minus |
| CG1745-PB | 2514 | CG1745-RB | 469..1321 | 895..43 | 4165 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-RA | 1744 | CG1745-RA | 760..1638 | 895..17 | 4335 | 99.5 | Minus |
| HP5-RC | 2159 | CG1745-RC | 760..1613 | 895..42 | 4210 | 99.5 | Minus |
| HP5-RB | 3720 | CG1745-RB | 760..1612 | 895..43 | 4205 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11455635..11456513 | 895..17 | 4335 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:59:36 has no hits.
BS17763.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:08 Download gff for
BS17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-PA | 469..1347 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:16 Download gff for
BS17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RA | 760..1638 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:01 Download gff for
BS17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RA | 760..1638 | 17..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:01 Download gff for
BS17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11455635..11456513 | 17..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:16 Download gff for
BS17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11349668..11350546 | 17..895 | 99 | | Minus |
BS17763.5prime Sequence
854 bp (765 high quality bases) assembled on 2007-05-29
> BS17763.5prime
GAAGTTATCAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGC
CGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCC
ATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAA
CCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCG
AACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTC
GACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACC
AAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGA
GGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAG
CAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTT
CAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTAC
GTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAAT
TCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGG
CCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCAT
CAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCC
AAAAAGCGTGCTCTGAACCACTCGTTGCGCGCTCATACACCGCCGCCCAG
TTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCA
AGCCCAAGATCAAGGCGAAGAGATTATCCAGTCGCGGACGCAACACCGAT
CCGG
BS17763.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1745-PB | 2514 | CG1745-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG1745-PA | 1347 | CG1745-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-RC | 2159 | CG1745-RC | 292..1129 | 17..854 | 4190 | 100 | Plus |
| HP5-RA | 1744 | CG1745-RA | 292..1129 | 17..854 | 4190 | 100 | Plus |
| HP5-RB | 3720 | CG1745-RB | 292..1129 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11455281..11456004 | 131..854 | 3620 | 100 | Plus |
| X | 23542271 | X | 11455077..11455191 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:45:05 has no hits.
BS17763.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:13 Download gff for
BS17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:05 Download gff for
BS17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RB | 292..1129 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:28 Download gff for
BS17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RB | 292..1129 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:28 Download gff for
BS17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11455077..11455191 | 17..131 | 100 | -> | Plus |
| X | 11455282..11456004 | 132..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:05 Download gff for
BS17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11349110..11349224 | 17..131 | 100 | -> | Plus |
| arm_X | 11349315..11350037 | 132..854 | 100 | | Plus |
BS17763.complete Sequence
1379 bp assembled on 2007-06-21
GenBank Submission: KX804145
> BS17763.complete
GAAGTTATCAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGC
CGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCC
ATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAA
CCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCG
AACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTC
GACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACC
AAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGA
GGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAG
CAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTT
CAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTAC
GTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAAT
TCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGG
CCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCAT
CAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCC
AAAAAGCGTGCTCTGAACCACTCGTTGCGCGCTCATACACCGCCGCCCAG
TTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCA
AGCCCAAGATCAAGGCGAAGAGATTATCCAGTCGCGGACGCAACACCGAT
CCGGATTTGGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGTGTGGTGAA
GGTGAGGAGGACGCGTTTACCAAGTGCCAAGTGGCCTGACTGCAAACCGC
CTCCCATTGGCGACGGAGTTGTCAGGAAGGTGTATCCCAAGAAGGCGGTA
TCCTTCAGCGAGGCCGTCGAGATTCTGGGCAGCCCCGGGGGTCCATCACG
TCGGTCTACTTTCGGTTCGCTTTCATCGAGAGGAGCTCCGAAACCGACAC
GACTGCAGCGTGTGGATGCCACTGGCAATGTGCTGGAGGACATAGCACTG
ACCTCCACGCCGCTCTTCTCGTCATCTTCTGGAGGCTCGCGCGAGCGGGT
TAGGCGCCGCTCATGCAACGGTACGCCTGTGGTCGGAAGGCTCAAGTTAC
GCAGGTTGGGCCGCCTAAGCATAGACAACAGCTCCTCCAGGTCTGATGGA
GGTGGAGATAATGATGATGACGATGAGGAGTATATAGGTAGGAGGATGCA
CTTATTAAACTGAAAGCTTTCTAGACCAT
BS17763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-RA | 1347 | CG1745-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
| HP5-RC | 1353 | CG1745-PC | 1..1322 | 17..1338 | 6610 | 100 | Plus |
| HP5-RB | 2514 | CG1745-PB | 1..1321 | 17..1337 | 6605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-RA | 1744 | CG1745-RA | 292..1638 | 17..1363 | 6735 | 100 | Plus |
| HP5-RC | 2159 | CG1745-RC | 292..1613 | 17..1338 | 6610 | 100 | Plus |
| HP5-RB | 3720 | CG1745-RB | 292..1612 | 17..1337 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11455281..11456513 | 131..1363 | 6165 | 100 | Plus |
| X | 23542271 | X | 11455077..11455191 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:25:38 has no hits.
BS17763.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:42 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:15 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-RA | 275..1621 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:22 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RA | 292..1637 | 17..1362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:42 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-RA | 275..1621 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:40 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RA | 292..1637 | 17..1362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:40 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11455077..11455191 | 17..131 | 100 | -> | Plus |
| X | 11455282..11456512 | 132..1362 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:22 Download gff for
BS17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11349110..11349224 | 17..131 | 100 | -> | Plus |
| arm_X | 11349315..11350545 | 132..1362 | 100 | | Plus |
BS17763.pep Sequence
Translation from 16 to 1362
> BS17763.pep
MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN
DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK
STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS
PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK
KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS
ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR
LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG
SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC
NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLN*
BS17763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-PA | 448 | CG1745-PA | 1..448 | 1..448 | 2290 | 100 | Plus |
| HP5-PC | 450 | CG1745-PC | 1..441 | 1..441 | 2253 | 100 | Plus |
| HP5-PB | 837 | CG1745-PB | 1..440 | 1..440 | 2247 | 100 | Plus |
