Clone Sequence Records
BS17765.complete Sequence
1655 bp assembled on 2009-12-07
GenBank Submission: KX802386
> BS17765.complete
GAAGTTATCAGTCGACATGCGTTGCTATTACGAGGAGCTCGAGCTCCAAA
GAAACGCCAACGATGGGGACATCAAGAGTGCGTACCGTAAGATGGCCCTG
CGCTGGCACCCGGACAAGAATCCCGACCGACTGGCGGAGGCCAAAGAGCG
CTTCCAGCTGATCCAGCAAGCGTATGAAGTTCTGTCTGATCCTCAGGAAC
GGTCTTGGTACGACAACCATCGCGAGCAGATCTTGCGCGGCAAGAACTCC
GATTATGCGGAGAACTGCCTGGACGTGTTCCAGTTCTTCACGAGCTCCTG
TTACAAGGGCTATGGCGACAATGAGCACGGCTTTTACCGCGTGTACACCG
ATGTCTTCGTCCAAATCGCCTCGGAGGACTTAGAGTTCATGGACAAGGAC
GACCGGTTGGGGATGGCGCCTGACTTTGGTCATTCAAACAGTAGTTACGA
AGATGTGGTGGGTCCGTTCTACGCCTTTTGGCAGGCATACAGTACCCGGA
AGACCTACGACTGGCTGTGTCCCTACGATGTTCGCGAAATAAAAGAGCGC
TTTATCCTACGCAAGGTGGAGAAGGAGATGAAAAAGATCGTTCAGGCTGC
CCGCAAGGAACGCAACGAAGAGGTTCGCAACTTAGTCAACTTTGTGCGAA
AAAGGGATCCCAGAGTGCAGGCCTACAGGCGCATGCTTGAGGAACGCGTC
GAGGCCAATCGACTTAAGCAGGAGGAGAAGCGCAAAGAGCAGTTAAGGAA
GCGCCAGGAAGAACTGGCAGCCGTCAGGAAAAATAATGTCTTTAACGAGG
GCTACGAGGAGCAGCTAAAGCAGTTAGAGCAGCAGTACGATAGCAAGTCA
GAAGATTACACGGATGAAGACGAGAACGACGACGATGGCGAGGACTTTGA
CCATGAAGGCGGCCAGGAAGCCGAGGAGTACGAAGTGGAGTATGTAGACG
ATCTTTACTGCGTGGCATGCAACAAGACATTTAAAAACGCCAAGGCGCGT
GCTAATCACGAAGAAAGCAAGAAGCATAATGAAAATGTCGACCGGCTGTG
TCAGGAAATGGAGGAAGAAGAGGACGCTTTCCACAATGAACCCCATGAAG
ACAGTTTAATGGGCGTACAGGAATCGCTGGAAGAATTGCAAGTCTCTGAG
GATCAGATATCTTTCGACGGGGTTCCAAGCGAAGAAGAATCTTCGCTAGC
CAAACGAACCAAAAAAAACAAAAAGGCAAGGAAGTCAGCTGTCAAGCAAG
CGCAGGCGGAAGGCAGTGACGAACCAGATGAGCCAATAGAAAAGAAGGCA
ATCAAGAGCGAGTCAGAGGATGAAGACTGGAGTAAAGGCAAAAAAGCGAG
CAAAAAGAGTAAAAGCAAAAAGACGACGACTAGGAAGGTTAAGCTATTAG
AGCAAACTGTTTCGGAACCGAATACAAAGGAGGCAACAGTGGCTCCCAAA
AGCGGAGATGAGGACCTCGACCCGACCAAGTCGCAACACACTTGTGTTAC
CTGTAGGCTTGTCTTTGACTCCAAGAACAAGCTGTTTGCCCACCTAAAGA
AGACGAACCATGGTGTCTACATACCTAAGGCAAAGCCTAATGTTGAGGGC
AAGCCTCCTGGCAAAGCTAAGGGCAAGCGCAACAAGTAGAAGCTTTCTAG
ACCAT
BS17765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1623 | CG2790-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1757 | CG2790-RA | 24..1648 | 15..1639 | 8125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24946670..24947688 | 1639..621 | 5095 | 100 | Minus |
| 2R | 25286936 | 2R | 24947746..24948355 | 624..15 | 3050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:46:36 has no hits.
BS17765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:43 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 1..1623 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:30 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 23..1645 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:25 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 26..1648 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:43 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 17..1645 | 10..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:33 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 26..1648 | 17..1639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:33 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24946670..24947686 | 623..1639 | 100 | <- | Minus |
| 2R | 24947748..24948353 | 17..622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:25 Download gff for
BS17765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20834193..20835209 | 623..1639 | 100 | <- | Minus |
| arm_2R | 20835271..20835876 | 17..622 | 100 | | Minus |
BS17765.3prime Sequence
955 bp (850 high quality bases) assembled on 2007-05-29
> BS17765.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGCGCTTGCCCTTAGCTTTGCCAGGA
GGCTTGCCCTCAACATTAGGCTTTGCCTTAGGTATGTAGACACCATGGTT
CGTCTTCTTTAGGTGGGCAAACAGCTTGTTCTTGGAGTCAAAGACAAGCC
TACAGGTAACACAAGTGTGTTGCGACTTGGTCGGGTCGAGGTCCTCATCT
CCGCTTTTGGGAGCCACTGTTGCCTCCTTTGTATTCGGTTCCGAAACAGT
TTGCTCTAATAGCTTAACCTTCCTAGTCGTCGTCTTTTTGCTTTTACTCT
TTTTGCTCGCTTTTTTGCCTTTACTCCAGTCTTCATCCTCTGACTCGCTC
TTGATTGCCTTCTTTTCTATTGGCTCATCTGGTTCGTCACTGCCTTCCGC
CTGCGCTTGCTTGACAGCTGACTTCCTTGCCTTTTTGTTTTTTTTGGTTC
GTTTGGCTAGCGAAGATTCTTCTTCGCTTGGAACCCCGTCGAAAGATATC
TGATCCTCAGAGACTTGCAATTCTTCCAGCGATTCCTGTACGCCCATTAA
ACTGTCTTCATGGGGTTCATTGTGGAAAGCGTCCTCTTCTTCCTCCATTT
CCTGACACAGCCGGTCGACATTTTCATTATGCTTCTTGCTTTCTTCGTGA
TTAGCACGCGCCTTGGCGTTTTTAAATGTCTTGTTGCATGCCACGCAGTA
AAGATCGTCTACATACTCCACTTCGTACTCCTCGGCTTCCTGGCCGCCTT
CATGGTCAAAGTCCTCGCCATCGTCGTCGTTCTCGTCTTCATCCGTGTAA
TCTTCTGACTTGCTATCGTACTGCTGCTCTAACTGCTTTAGCTGCTCCTC
GTAGCCCTCGTTAAAGACATTATTTTTCCTGACGGCTGCCAGTTTCTTCC
TGCCGCTTCCTTAACTGCTCTTTGCGCTTCTCCTCCTGCTTAGGTCGATG
GGCCT
BS17765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-PA | 1623 | CG2790-RA | 746..1623 | 894..17 | 4390 | 100 | Minus |
| CG2790-PA | 1623 | CG2790-RA | 686..747 | 955..894 | 235 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1757 | CG2790-RA | 711..1648 | 955..17 | 4625 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24946670..24947607 | 17..955 | 4600 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:32:06 has no hits.
BS17765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:19 Download gff for
BS17765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-PA | 686..1623 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:50 Download gff for
BS17765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 711..1648 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:36 Download gff for
BS17765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 711..1648 | 17..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:36 Download gff for
BS17765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24946670..24947607 | 17..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:50 Download gff for
BS17765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20834193..20835130 | 17..955 | 99 | | Plus |
BS17765.5prime Sequence
849 bp (788 high quality bases) assembled on 2007-05-29
> BS17765.5prime
GAAGTTATCAGTCGACATGCGTTGCTATTACGAGGAGCTCGAGCTCCAAA
GAAACGCCAACGATGGGGACATCAAGAGTGCGTACCGTAAGATGGCCCTG
CGCTGGCACCCGGACAAGAATCCCGACCGACTGGCGGAGGCCAAAGAGCG
CTTCCAGCTGATCCAGCAAGCGTATGAAGTTCTGTCTGATCCTCAGGAAC
GGTCTTGGTACGACAACCATCGCGAGCAGATCTTGCGCGGCAAGAACTCC
GATTATGCGGAGAACTGCCTGGACGTGTTCCAGTTCTTCACGAGCTCCTG
TTACAAGGGCTATGGCGACAATGAGCACGGCTTTTACCGCGTGTACACCG
ATGTCTTCGTCCAAATCGCCTCGGAGGACTTAGAGTTCATGGACAAGGAC
GACCGGTTGGGGATGGCGCCTGACTTTGGTCATTCAAACAGTAGTTACGA
AGATGTGGTGGGTCCGTTCTACGCCTTTTGGCAGGCATACAGTACCCGGA
AGACCTACGACTGGCTGTGTCCCTACGATGTTCGCGAAATAAAAGAGCGC
TTTATCCTACGCAAGGTGGAGAAGGAGATGAAAAAGATCGTTCAGGCTGC
CCGCAAGGAACGCAACGAAGAGGTTCGCAACTTAGTCAACTTTGTGCGAA
AAAGGGATCCCAGAGTGCAGGCCTACAGGCGCATGCTTGAGGAACGCGTC
GAGGCCAATCGACTTAAGCAGGAGGAGAAGCGCAAAGAGCAGTTAAGGAA
GCGCCAGGAAGAACTGGCAGCCGTCAGGAAAAATAATGTCTTTTACGAGG
GCTACGAGGAGCAGCTAAAGCAGTTAGAGCAGCAGTACGATAGCAAGTC
BS17765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-PA | 1623 | CG2790-RA | 1..833 | 17..849 | 4140 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1757 | CG2790-RA | 24..858 | 15..849 | 4160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24947746..24948355 | 624..15 | 3050 | 100 | Minus |
| 2R | 25286936 | 2R | 24947460..24947688 | 849..621 | 1130 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-05 13:53:52 has no hits.
BS17765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:30:23 Download gff for
BS17765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:11 Download gff for
BS17765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 20..858 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:15:34 Download gff for
BS17765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 20..858 | 10..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:15:34 Download gff for
BS17765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24947460..24947686 | 623..849 | 99 | <- | Minus |
| 2R | 24947748..24948359 | 10..622 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:11 Download gff for
BS17765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20834983..20835209 | 623..849 | 99 | <- | Minus |
| arm_2R | 20835271..20835882 | 10..622 | 99 | | Minus |
BS17765.pep Sequence
Translation from 16 to 1638
> BS17765.pep
MRCYYEELELQRNANDGDIKSAYRKMALRWHPDKNPDRLAEAKERFQLIQ
QAYEVLSDPQERSWYDNHREQILRGKNSDYAENCLDVFQFFTSSCYKGYG
DNEHGFYRVYTDVFVQIASEDLEFMDKDDRLGMAPDFGHSNSSYEDVVGP
FYAFWQAYSTRKTYDWLCPYDVREIKERFILRKVEKEMKKIVQAARKERN
EEVRNLVNFVRKRDPRVQAYRRMLEERVEANRLKQEEKRKEQLRKRQEEL
AAVRKNNVFNEGYEEQLKQLEQQYDSKSEDYTDEDENDDDGEDFDHEGGQ
EAEEYEVEYVDDLYCVACNKTFKNAKARANHEESKKHNENVDRLCQEMEE
EEDAFHNEPHEDSLMGVQESLEELQVSEDQISFDGVPSEEESSLAKRTKK
NKKARKSAVKQAQAEGSDEPDEPIEKKAIKSESEDEDWSKGKKASKKSKS
KKTTTRKVKLLEQTVSEPNTKEATVAPKSGDEDLDPTKSQHTCVTCRLVF
DSKNKLFAHLKKTNHGVYIPKAKPNVEGKPPGKAKGKRNK*
BS17765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-PA | 540 | CG2790-PA | 1..540 | 1..540 | 2853 | 100 | Plus |
| mrj-PA | 259 | CG8448-PA | 4..92 | 4..90 | 216 | 46.1 | Plus |
| mrj-PC | 259 | CG8448-PC | 4..92 | 4..90 | 216 | 46.1 | Plus |
| mrj-PB | 259 | CG8448-PB | 4..92 | 4..90 | 216 | 46.1 | Plus |
| mrj-PD | 259 | CG8448-PD | 4..92 | 4..90 | 216 | 46.1 | Plus |
