Clone Sequence Records
BS17770.complete Sequence
383 bp assembled on 2010-02-09
GenBank Submission: KX800733
> BS17770.complete
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGATAAAAGCTTTCTAGACCAT
BS17770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 351 | CG12372-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 457 | CG12372-RA | 89..440 | 17..368 | 1760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12633805..12633969 | 84..248 | 825 | 100 | Plus |
2R | 25286936 | 2R | 12634036..12634155 | 249..368 | 600 | 100 | Plus |
2R | 25286936 | 2R | 12633677..12633745 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:13 has no hits.
BS17770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:18 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:36 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 61..409 | 17..365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:22 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 89..437 | 17..365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:20 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 51..412 | 7..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:56 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 89..437 | 17..365 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:56 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12633677..12633745 | 17..85 | 100 | -> | Plus |
2R | 12633807..12633969 | 86..248 | 100 | -> | Plus |
2R | 12634036..12634152 | 249..365 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:22 Download gff for
BS17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8521182..8521250 | 17..85 | 100 | -> | Plus |
arm_2R | 8521312..8521474 | 86..248 | 100 | -> | Plus |
arm_2R | 8521541..8521657 | 249..365 | 100 | | Plus |
BS17770.3prime Sequence
381 bp (381 high quality bases) assembled on 2007-05-29
> BS17770.3prime
ATGGTCTAGAAAGCTTTTATCGTTGACTTCTGTCCCGAGATTTGTAGACA
ATTCCACGATTCTTCATGTCACGTAAGGTAGACTGCGGCAGTGTTCCGGA
TACAGAAATGGCATAGATACCACGAGTAAAGCGGGACAATCTTTGCCACT
TGGCCACCCAGGAGTCGGTGGGCGTAGTTAGGGCAATAATTCCGTCAAAG
TTGTTGCTAGTGTGATCATAGACATTGTCCTTGTTGTTTTTCATTCGCAG
GAACTCCTCGCAGTTTTCACAGCCATCAGTCTCAAATTGATCAAAACTCT
TCACTAGGGAGCAAACGAGGCAGGCGCGAAGTCCTCGCAGATCCTTGGGT
ATCGCGTCAAAGGCCATGTCGACTGATAACT
BS17770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12372-PA | 351 | spt4-RA | 1..351 | 367..17 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 457 | CG12372-RA | 89..440 | 367..16 | 1760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12633805..12633969 | 300..136 | 825 | 100 | Minus |
2R | 25286936 | 2R | 12634036..12634155 | 135..16 | 600 | 100 | Minus |
2R | 25286936 | 2R | 12633677..12633745 | 367..299 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:14:05 has no hits.
BS17770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:02 Download gff for
BS17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12372-PA | 1..351 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:59 Download gff for
BS17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..440 | 16..377 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:07 Download gff for
BS17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..440 | 16..377 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:07 Download gff for
BS17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12633667..12633745 | 299..377 | 94 | -> | Minus |
2R | 12633807..12633969 | 136..298 | 100 | -> | Minus |
2R | 12634036..12634155 | 16..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:59 Download gff for
BS17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8521172..8521250 | 299..377 | 94 | -> | Minus |
arm_2R | 8521312..8521474 | 136..298 | 100 | -> | Minus |
arm_2R | 8521541..8521660 | 16..135 | 100 | | Minus |
BS17770.5prime Sequence
381 bp (381 high quality bases) assembled on 2007-05-29
> BS17770.5prime
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGATAAAAGCTTTCTAGACC
BS17770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12372-PA | 351 | spt4-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 457 | CG12372-RA | 89..440 | 17..368 | 1760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12633805..12633969 | 84..248 | 825 | 100 | Plus |
2R | 25286936 | 2R | 12634036..12634155 | 249..368 | 600 | 100 | Plus |
2R | 25286936 | 2R | 12633677..12633745 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:45:13 has no hits.
BS17770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:08 Download gff for
BS17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12372-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:10 Download gff for
BS17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..440 | 7..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:55 Download gff for
BS17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..440 | 7..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:55 Download gff for
BS17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12633667..12633745 | 7..85 | 94 | -> | Plus |
2R | 12633807..12633969 | 86..248 | 100 | -> | Plus |
2R | 12634036..12634155 | 249..368 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:10 Download gff for
BS17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8521172..8521250 | 7..85 | 94 | -> | Plus |
arm_2R | 8521312..8521474 | 86..248 | 100 | -> | Plus |
arm_2R | 8521541..8521660 | 249..368 | 100 | | Plus |
BS17770.pep Sequence
Translation from 16 to 366
> BS17770.pep
MAFDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVY
DHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRD
MKNRGIVYKSRDRSQR*
BS17770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-PA | 116 | CG12372-PA | 1..116 | 1..116 | 615 | 100 | Plus |