Clone BS17770 Report

Search the DGRC for BS17770

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptspt4-RA
Protein status:BS17770.pep: full length peptide match
Sequenced Size:383

Clone Sequence Records

BS17770.complete Sequence

383 bp assembled on 2010-02-09

GenBank Submission: KX800733

> BS17770.complete
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGATAAAAGCTTTCTAGACCAT

BS17770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 351 CG12372-PA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 457 CG12372-RA 89..440 17..368 1760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12633805..12633969 84..248 825 100 Plus
2R 25286936 2R 12634036..12634155 249..368 600 100 Plus
2R 25286936 2R 12633677..12633745 17..85 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:04:13 has no hits.

BS17770.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:18 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..351 17..367 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:36 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 61..409 17..365 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:22 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 89..437 17..365 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:20 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 51..412 7..368 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:56 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 89..437 17..365 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:56 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12633677..12633745 17..85 100 -> Plus
2R 12633807..12633969 86..248 100 -> Plus
2R 12634036..12634152 249..365 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:22 Download gff for BS17770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521182..8521250 17..85 100 -> Plus
arm_2R 8521312..8521474 86..248 100 -> Plus
arm_2R 8521541..8521657 249..365 100   Plus

BS17770.3prime Sequence

381 bp (381 high quality bases) assembled on 2007-05-29

> BS17770.3prime
ATGGTCTAGAAAGCTTTTATCGTTGACTTCTGTCCCGAGATTTGTAGACA
ATTCCACGATTCTTCATGTCACGTAAGGTAGACTGCGGCAGTGTTCCGGA
TACAGAAATGGCATAGATACCACGAGTAAAGCGGGACAATCTTTGCCACT
TGGCCACCCAGGAGTCGGTGGGCGTAGTTAGGGCAATAATTCCGTCAAAG
TTGTTGCTAGTGTGATCATAGACATTGTCCTTGTTGTTTTTCATTCGCAG
GAACTCCTCGCAGTTTTCACAGCCATCAGTCTCAAATTGATCAAAACTCT
TCACTAGGGAGCAAACGAGGCAGGCGCGAAGTCCTCGCAGATCCTTGGGT
ATCGCGTCAAAGGCCATGTCGACTGATAACT

BS17770.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12372-PA 351 spt4-RA 1..351 367..17 1755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 457 CG12372-RA 89..440 367..16 1760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12633805..12633969 300..136 825 100 Minus
2R 25286936 2R 12634036..12634155 135..16 600 100 Minus
2R 25286936 2R 12633677..12633745 367..299 345 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:14:05 has no hits.

BS17770.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:02 Download gff for BS17770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12372-PA 1..351 17..367 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:59 Download gff for BS17770.3prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..440 16..377 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:07 Download gff for BS17770.3prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..440 16..377 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:07 Download gff for BS17770.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12633667..12633745 299..377 94 -> Minus
2R 12633807..12633969 136..298 100 -> Minus
2R 12634036..12634155 16..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:59 Download gff for BS17770.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521172..8521250 299..377 94 -> Minus
arm_2R 8521312..8521474 136..298 100 -> Minus
arm_2R 8521541..8521660 16..135 100   Minus

BS17770.5prime Sequence

381 bp (381 high quality bases) assembled on 2007-05-29

> BS17770.5prime
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGATAAAAGCTTTCTAGACC

BS17770.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12372-PA 351 spt4-RA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 457 CG12372-RA 89..440 17..368 1760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12633805..12633969 84..248 825 100 Plus
2R 25286936 2R 12634036..12634155 249..368 600 100 Plus
2R 25286936 2R 12633677..12633745 17..85 345 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:45:13 has no hits.

BS17770.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:08 Download gff for BS17770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12372-PA 1..351 17..367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:10 Download gff for BS17770.5prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..440 7..368 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:55 Download gff for BS17770.5prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..440 7..368 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:55 Download gff for BS17770.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12633667..12633745 7..85 94 -> Plus
2R 12633807..12633969 86..248 100 -> Plus
2R 12634036..12634155 249..368 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:10 Download gff for BS17770.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521172..8521250 7..85 94 -> Plus
arm_2R 8521312..8521474 86..248 100 -> Plus
arm_2R 8521541..8521660 249..368 100   Plus

BS17770.pep Sequence

Translation from 16 to 366

> BS17770.pep
MAFDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVY
DHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRD
MKNRGIVYKSRDRSQR*

BS17770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-PA 116 CG12372-PA 1..116 1..116 615 100 Plus