Clone Sequence Records
BS17774.complete Sequence
890 bp assembled on 2010-02-09
GenBank Submission: KX801472
> BS17774.complete
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGG
GGGCGCTCAAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTT
GTGTTGGCCTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTCCCAAGTGT
ACGCAGGACAGAAAGAAGAAATAGAAGCTTTCTAGACCAT
BS17774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 858 | CG9293-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG9293-RB | 816 | CG9293-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
CG9293-RB | 816 | CG9293-PB | 553..816 | 611..874 | 1320 | 100 | Plus |
Ing3-RA | 2061 | CG6632-PA | 1869..2021 | 697..849 | 210 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 1044 | CG9293-RA | 100..958 | 17..875 | 4295 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 100..654 | 17..571 | 2775 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 652..916 | 611..875 | 1325 | 100 | Plus |
Ing3-RA | 2298 | CG6632-RA | 1997..2149 | 697..849 | 210 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13386757..13387114 | 410..53 | 1790 | 100 | Minus |
2L | 23513712 | 2L | 13386488..13386690 | 613..411 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 13386099..13386259 | 772..612 | 805 | 100 | Minus |
2L | 23513712 | 2L | 13385934..13386036 | 875..773 | 515 | 100 | Minus |
X | 23542271 | X | 18650867..18651019 | 849..697 | 210 | 75.8 | Minus |
2L | 23513712 | 2L | 13387176..13387213 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:02 has no hits.
BS17774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:44 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:11 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 87..931 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:42 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 100..944 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:45 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 79..952 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:15 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 100..944 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:15 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
2L | 13387177..13387213 | 17..53 | 100 | | Minus |
2L | 13385948..13386036 | 773..861 | 100 | <- | Minus |
2L | 13386099..13386257 | 614..772 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:42 Download gff for
BS17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13385948..13386036 | 773..861 | 100 | <- | Minus |
arm_2L | 13386099..13386257 | 614..772 | 100 | <- | Minus |
arm_2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
arm_2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
arm_2L | 13387177..13387213 | 17..53 | 100 | | Minus |
BS17774.3prime Sequence
834 bp (794 high quality bases) assembled on 2007-05-29
> BS17774.3prime
ATGGTCTAGAAAGCTTCTATTTCTTCTTTCTGTCCTGCGTACACTTGGGA
CAGAACCACTTGCCCTTTGGCTTTGTGGTGAGGCCAACACAAGCGAAGTG
AAACCACTCGATGGGACAGTCGGGATTGTCGCAGCCAATCATCTCTCCAT
AGGACACCTGGTGGCATAGGCAATATGTGGGCTCATTGGGATCGACGGGC
ATGTCCATAACGTCGCTGGGATGAGTGGCGGCCGTGTGGCACGATTCCTT
CTCAGAGTCATCAACCTCGACGGTTTTCTTTTGAGCGCCCCCCTTGCGAG
TTTCTTTTTCTTGATTTACCTTGGACTTTTTCTTTTTGCTACCTTGCCCG
GCATTGCTGCTCGAATTGACACTGGAATTGGCGTTAGATTGGTTGTTGCC
GCGCCCAGTTTCCTCATCCGAGGATGCGGACTTTTTCTTTTTGCCCGTCG
TCTTGCTGTCCTTGGTTTTTTTGCGACCTTTCTTGGCCACCACTTCCTCG
GATTTGGCACGCGTGGATGAGGCCTTCTCCTGAATCTCACCCTCGAAGCG
TGCTAAATCGTTGTCCAGTCGCCGTATCTGCTTGTCCACTAGTTCGTAGG
TCTGAATGGCCAGCTGCACCTTGTCGTCGCTGTACTCCTTGGCCTTTCCG
AACAGTGCCTTGATATCCTCCTGGCGCTCCCTCCTCTCATCCTCGCTCAT
GGCCCCGTTCTCGCCCAGCTTGCGCATAAAGTCCTTGGCATGGCTATCGA
TGCTCTTCATCGCTGTTTGTGCTCGATCGTCTAATTTTCGCATCAGCTTA
AAATTTCTCTCCAGCTCCGTTGGCAGACTTTCCA
BS17774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-PA | 858 | CG9293-RA | 41..858 | 834..17 | 4090 | 100 | Minus |
CG9293-PB | 816 | CG9293-RB | 41..555 | 834..320 | 2575 | 100 | Minus |
CG9293-PB | 816 | CG9293-RB | 553..816 | 280..17 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 1044 | CG9293-RA | 140..958 | 834..16 | 4095 | 100 | Minus |
CG9293-RB | 1002 | CG9293-RB | 140..654 | 834..320 | 2575 | 100 | Minus |
CG9293-RB | 1002 | CG9293-RB | 652..916 | 280..16 | 1325 | 100 | Minus |
Ing3-RA | 2298 | CG6632-RA | 1997..2149 | 194..42 | 210 | 77.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13386757..13387110 | 481..834 | 1770 | 100 | Plus |
2L | 23513712 | 2L | 13386488..13386690 | 278..480 | 1015 | 100 | Plus |
2L | 23513712 | 2L | 13386099..13386259 | 119..279 | 805 | 100 | Plus |
2L | 23513712 | 2L | 13385934..13386036 | 16..118 | 515 | 100 | Plus |
X | 23542271 | X | 18650867..18651019 | 42..194 | 210 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:42:59 has no hits.
BS17774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:56 Download gff for
BS17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-PA | 42..858 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:50 Download gff for
BS17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 141..965 | 9..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:22 Download gff for
BS17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 141..965 | 9..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:22 Download gff for
BS17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13386757..13387109 | 481..833 | 100 | | Plus |
2L | 13385927..13386036 | 9..118 | 97 | <- | Plus |
2L | 13386099..13386257 | 119..277 | 100 | <- | Plus |
2L | 13386488..13386690 | 278..480 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:50 Download gff for
BS17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13385927..13386036 | 9..118 | 97 | <- | Plus |
arm_2L | 13386099..13386257 | 119..277 | 100 | <- | Plus |
arm_2L | 13386488..13386690 | 278..480 | 100 | <- | Plus |
arm_2L | 13386757..13387109 | 481..833 | 100 | | Plus |
BS17774.5prime Sequence
814 bp (809 high quality bases) assembled on 2007-05-29
> BS17774.5prime
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGG
GGGCGCTCAAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTT
GTGTTGGCCTCACC
BS17774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-PA | 858 | CG9293-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG9293-PB | 816 | CG9293-RB | 1..555 | 17..571 | 2775 | 100 | Plus |
CG9293-PB | 816 | CG9293-RB | 553..756 | 611..814 | 1020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 1044 | CG9293-RA | 100..897 | 17..814 | 3990 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 100..654 | 17..571 | 2775 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 652..855 | 611..814 | 1020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13386757..13387114 | 410..53 | 1790 | 100 | Minus |
2L | 23513712 | 2L | 13386488..13386690 | 613..411 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 13386099..13386259 | 772..612 | 805 | 100 | Minus |
2L | 23513712 | 2L | 13385995..13386036 | 814..773 | 210 | 100 | Minus |
2L | 23513712 | 2L | 13387176..13387213 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:32:26 has no hits.
BS17774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:32:01 Download gff for
BS17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:07:52 Download gff for
BS17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 92..897 | 9..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:22 Download gff for
BS17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 92..897 | 9..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:22 Download gff for
BS17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
2L | 13387177..13387221 | 9..53 | 91 | | Minus |
2L | 13385995..13386036 | 773..814 | 100 | <- | Minus |
2L | 13386099..13386257 | 614..772 | 100 | <- | Minus |
2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:07:52 Download gff for
BS17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13385995..13386036 | 773..814 | 100 | <- | Minus |
arm_2L | 13386099..13386257 | 614..772 | 100 | <- | Minus |
arm_2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
arm_2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
arm_2L | 13387177..13387221 | 9..53 | 91 | | Minus |
BS17774.pep Sequence
Translation from 16 to 873
> BS17774.pep
MSSAIYLENYLDGLESLPTELERNFKLMRKLDDRAQTAMKSIDSHAKDFM
RKLGENGAMSEDERRERQEDIKALFGKAKEYSDDKVQLAIQTYELVDKQI
RRLDNDLARFEGEIQEKASSTRAKSEEVVAKKGRKKTKDSKTTGKKKKSA
SSDEETGRGNNQSNANSSVNSSSNAGQGSKKKKSKVNQEKETRKGGAQKK
TVEVDDSEKESCHTAATHPSDVMDMPVDPNEPTYCLCHQVSYGEMIGCDN
PDCPIEWFHFACVGLTTKPKGKWFCPKCTQDRKKK*
BS17774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-PA | 285 | CG9293-PA | 1..285 | 1..285 | 1493 | 100 | Plus |
CG9293-PB | 271 | CG9293-PB | 1..271 | 1..285 | 1397 | 95.1 | Plus |
CG7379-PA | 433 | CG7379-PA | 223..408 | 112..282 | 294 | 36.3 | Plus |
Ing3-PA | 686 | CG6632-PA | 624..681 | 228..285 | 256 | 63.8 | Plus |
Ing3-PA | 686 | CG6632-PA | 2..176 | 5..186 | 199 | 30.2 | Plus |
MESR4-PD | 2151 | CG4903-PD | 2092..2136 | 234..278 | 163 | 55.6 | Plus |