Clone Sequence Records
BS17783.complete Sequence
794 bp assembled on 2010-02-09
GenBank Submission: KX805530
> BS17783.complete
GAAGTTATCAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAG
CCTGCGCCCTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGAT
GGCCGCATTGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CCGCCAGGGTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCC
TCCTCCCTGCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACA
CCATGGTCAACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
TGCTGCTGCCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCT
CCATTCCCTCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGC
CGGTGCTCTTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCAT
GATCTGCGCTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGTGCTGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTGATCAACAACGCCTAAAAGCTTTCTAGACCAT
BS17783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 762 | CG18211-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
betaTry-RA | 762 | CG18211-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG30025-RA | 762 | CG30025-PA | 1..762 | 17..778 | 2475 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 1071 | CG18211-RB | 17..779 | 16..778 | 3815 | 100 | Plus |
betaTry-RA | 813 | CG18211-RA | 17..779 | 16..778 | 3815 | 100 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..776 | 16..778 | 2480 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11346341..11347103 | 16..778 | 3815 | 100 | Plus |
2R | 25286936 | 2R | 11353598..11354360 | 778..16 | 2480 | 88.3 | Minus |
2R | 25286936 | 2R | 11355332..11356096 | 16..780 | 2430 | 87.8 | Plus |
2R | 25286936 | 2R | 11349094..11349856 | 778..16 | 2420 | 87.8 | Minus |
2R | 25286936 | 2R | 11350826..11351588 | 16..778 | 2420 | 87.8 | Plus |
2R | 25286936 | 2R | 11344346..11345093 | 763..16 | 2390 | 88 | Minus |
2R | 25286936 | 2R | 11345694..11346014 | 370..50 | 285 | 72.6 | Minus |
2R | 25286936 | 2R | 11345320..11345489 | 744..575 | 280 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:06 has no hits.
BS17783.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:46 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:12 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 4..763 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:45 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 8..767 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:46 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..774 | 15..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:16 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 18..777 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:16 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11346342..11347101 | 17..776 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:45 Download gff for
BS17783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7233847..7234606 | 17..776 | 100 | | Plus |
BS17783.3prime Sequence
792 bp (740 high quality bases) assembled on 2007-05-29
> BS17783.3prime
ATGGTCTAGAAAGCTTTTAGGCGTTGTTGATCACCCAGGAGCGGAGGGCA
GCAACATCGGCATAGACACCGGGGTAGTTAGCGGCAGCACATCCGTATCC
CCAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGGGCCACCGG
AGTCACCCTGGCACGAGTCCTTGCCGCTGGCAAAAGCGCAGATCATGGAG
CTCTTGATCTGGTTTCCGTAGCCATAGGAGGAAGAAGAGCACCGGCTCTG
GCTGACGATGTTCACGTTGACATAACGCAGCTGGGAGGGAATGGAGCTGG
AGCCAGAGGACTCGGTACCCCATCCGGAGACGGAGGCAGCAGCACCGTTG
GCGGGGTTGGAGCTAGCCAGACCGATGGCCTTGATGGTGGAGCTGAAGCT
CAGAGAGGAGCTCAGATGGAGCACAGCGATGTCGTTGACCATGGTGTTGG
CGTTGTAACCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCGACGACGCCA
CCAGAGCTCCAGTAGCTGGATCCGGCGCGGATCTGCAGGGAGGAGGCGGA
CACGGACTGCAGGCAGTGAGCGGCGGTCACGATCACCCTGGCGGAGTAGA
TGGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAGATCTGCCAG
GGGAAGCTGCTGATGGTGGTAGCAGTACCGCCGACAATGCGGCCATCCAA
CTGGGGCAGGAGACCCTCGGGGATGGTGCCTCCCAGGGCGCAGGCTACAG
CCGACAACAGGATCAGGAACTTCAGCATGTCGACTGATAACT
BS17783.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18211-PA | 762 | betaTry-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 1..186 | 778..593 | 655 | 94 | Minus |
CG12351-PA | 762 | deltaTry-RA | 1..186 | 778..593 | 655 | 94 | Minus |
CG30031-PA | 762 | CG30031-RA | 1..186 | 778..593 | 655 | 94 | Minus |
CG30028-PA | 762 | gammaTry-RA | 1..186 | 778..593 | 655 | 94 | Minus |
CG18444-PA | 771 | alphaTry-RA | 36..185 | 743..594 | 600 | 96 | Minus |
CG18444-PA | 771 | alphaTry-RA | 240..401 | 539..378 | 485 | 91.9 | Minus |
CG30025-PA | 762 | CG30025-RA | 616..689 | 163..90 | 370 | 100 | Minus |
CG12351-PA | 762 | deltaTry-RA | 616..689 | 163..90 | 370 | 100 | Minus |
CG30031-PA | 762 | CG30031-RA | 616..689 | 163..90 | 370 | 100 | Minus |
CG30028-PA | 762 | gammaTry-RA | 616..689 | 163..90 | 370 | 100 | Minus |
CG18444-PA | 771 | alphaTry-RA | 616..689 | 163..90 | 370 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 381..461 | 398..318 | 355 | 97.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 381..461 | 398..318 | 355 | 97.5 | Minus |
CG30031-PA | 762 | CG30031-RA | 381..461 | 398..318 | 355 | 97.5 | Minus |
CG30028-PA | 762 | gammaTry-RA | 381..461 | 398..318 | 355 | 97.5 | Minus |
CG30025-PA | 762 | CG30025-RA | 700..762 | 79..17 | 315 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 196..275 | 583..504 | 250 | 92.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 196..275 | 583..504 | 250 | 92.5 | Minus |
CG30031-PA | 762 | CG30031-RA | 196..275 | 583..504 | 250 | 92.5 | Minus |
CG30028-PA | 762 | gammaTry-RA | 196..275 | 583..504 | 250 | 92.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 700..746 | 79..33 | 235 | 100 | Minus |
CG30031-PA | 762 | CG30031-RA | 700..746 | 79..33 | 235 | 100 | Minus |
CG30028-PA | 762 | gammaTry-RA | 700..746 | 79..33 | 235 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 481..429 | 215 | 96.2 | Minus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 481..429 | 215 | 96.2 | Minus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 481..429 | 215 | 96.2 | Minus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 481..429 | 215 | 96.2 | Minus |
CG18444-PA | 771 | alphaTry-RA | 700..747 | 79..32 | 190 | 95.8 | Minus |
CG18444-PA | 771 | alphaTry-RA | 199..233 | 580..546 | 150 | 97.1 | Minus |
CG18681-PA | 771 | epsilonTry-RA | 616..650 | 163..129 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 1071 | CG18211-RB | 17..779 | 779..17 | 3815 | 100 | Minus |
betaTry-RA | 813 | CG18211-RA | 17..779 | 779..17 | 3815 | 100 | Minus |
CG30025-RA | 810 | CG30025-RA | 14..776 | 779..17 | 2480 | 88.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11346341..11347103 | 779..17 | 3815 | 100 | Minus |
2R | 25286936 | 2R | 11353598..11354360 | 17..779 | 2480 | 88.3 | Plus |
2R | 25286936 | 2R | 11355332..11356096 | 779..15 | 2430 | 87.8 | Minus |
2R | 25286936 | 2R | 11349094..11349856 | 17..779 | 2420 | 87.8 | Plus |
2R | 25286936 | 2R | 11350826..11351588 | 779..17 | 2420 | 87.8 | Minus |
2R | 25286936 | 2R | 11344346..11345093 | 32..779 | 2390 | 88 | Plus |
2R | 25286936 | 2R | 11345694..11346014 | 425..745 | 285 | 72.6 | Plus |
2R | 25286936 | 2R | 11345320..11345489 | 51..220 | 280 | 77.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:45:59 has no hits.
BS17783.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:09 Download gff for
BS17783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18211-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:56 Download gff for
BS17783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..778 | 9..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:45 Download gff for
BS17783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 7..788 | 9..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:45 Download gff for
BS17783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11346331..11347112 | 9..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:56 Download gff for
BS17783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7233836..7234617 | 9..787 | 99 | | Minus |
BS17783.5prime Sequence
792 bp (755 high quality bases) assembled on 2007-05-29
> BS17783.5prime
GAAGTTATCAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAG
CCTGCGCCCTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGAT
GGCCGCATTGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CCGCCAGGGTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCC
TCCTCCCTGCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACA
CCATGGTCAACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
TGCTGCTGCCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCT
CCATTCCCTCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGC
CGGTGCTCTTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCAT
GATCTGCGCTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGNGGATAC
GGATGTGCTGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTGATCAACAACGCCTAAAAGCTTTCTAGACC
BS17783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18211-PA | 762 | betaTry-RA | 1..762 | 17..778 | 3791 | 99.8 | Plus |
CG30025-PA | 762 | CG30025-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG12351-PA | 762 | deltaTry-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG30031-PA | 762 | CG30031-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG30028-PA | 762 | gammaTry-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG18444-PA | 771 | alphaTry-RA | 36..185 | 52..201 | 600 | 96 | Plus |
CG18444-PA | 771 | alphaTry-RA | 240..401 | 256..417 | 485 | 91.9 | Plus |
CG30025-PA | 762 | CG30025-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG30031-PA | 762 | CG30031-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG30028-PA | 762 | gammaTry-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG30025-PA | 762 | CG30025-RA | 616..689 | 632..705 | 351 | 98.6 | Plus |
CG12351-PA | 762 | deltaTry-RA | 616..689 | 632..705 | 351 | 98.6 | Plus |
CG30031-PA | 762 | CG30031-RA | 616..689 | 632..705 | 351 | 98.6 | Plus |
CG30028-PA | 762 | gammaTry-RA | 616..689 | 632..705 | 351 | 98.6 | Plus |
CG18444-PA | 771 | alphaTry-RA | 616..689 | 632..705 | 351 | 98.6 | Plus |
CG30025-PA | 762 | CG30025-RA | 700..762 | 716..778 | 315 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG30031-PA | 762 | CG30031-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG30028-PA | 762 | gammaTry-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG30031-PA | 762 | CG30031-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG30028-PA | 762 | gammaTry-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG18444-PA | 771 | alphaTry-RA | 700..747 | 716..763 | 190 | 95.8 | Plus |
CG18444-PA | 771 | alphaTry-RA | 199..233 | 215..249 | 150 | 97.1 | Plus |
CG18681-PA | 771 | epsilonTry-RA | 616..650 | 632..666 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 1071 | CG18211-RB | 17..779 | 16..778 | 3804 | 99.9 | Plus |
betaTry-RA | 813 | CG18211-RA | 17..779 | 16..778 | 3804 | 99.9 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..776 | 16..778 | 2469 | 88.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11346341..11347103 | 16..778 | 3804 | 99.9 | Plus |
2R | 25286936 | 2R | 11353598..11354360 | 778..16 | 2469 | 88.2 | Minus |
2R | 25286936 | 2R | 11355332..11356096 | 16..780 | 2419 | 87.7 | Plus |
2R | 25286936 | 2R | 11350826..11351588 | 16..778 | 2409 | 87.7 | Plus |
2R | 25286936 | 2R | 11349094..11349856 | 778..16 | 2409 | 87.7 | Minus |
2R | 25286936 | 2R | 11344346..11345093 | 763..16 | 2379 | 87.8 | Minus |
2R | 25286936 | 2R | 11345694..11346014 | 370..50 | 285 | 72.6 | Minus |
2R | 25286936 | 2R | 11345320..11345489 | 744..575 | 269 | 77.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:00:51 has no hits.
BS17783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:15 Download gff for
BS17783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18211-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:43:29 Download gff for
BS17783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..778 | 12..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:55 Download gff for
BS17783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 7..788 | 8..786 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:55 Download gff for
BS17783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11346331..11347112 | 8..786 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:43:29 Download gff for
BS17783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7233836..7234617 | 8..786 | 98 | | Plus |
BS17783.pep Sequence
Translation from 16 to 777
> BS17783.pep
MLKFLILLSAVACALGGTIPEGLLPQLDGRIVGGTATTISSFPWQISLQR
SGSHSCGGSIYSARVIVTAAHCLQSVSASSLQIRAGSSYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVLHLSSSLSFSSTIKAIGLASSNPANGAAASV
SGWGTESSGSSSIPSQLRYVNVNIVSQSRCSSSSYGYGNQIKSSMICAFA
SGKDSCQGDSGGPLVSGGVLVGVVSWGYGCAAANYPGVYADVAALRSWVI
NNA*
BS17783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-PB | 253 | CG18211-PB | 1..253 | 1..253 | 1286 | 100 | Plus |
betaTry-PA | 253 | CG18211-PA | 1..253 | 1..253 | 1286 | 100 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 1163 | 88.1 | Plus |
gammaTry-PA | 253 | CG30028-PA | 1..253 | 1..253 | 1158 | 87.7 | Plus |
deltaTry-PA | 253 | CG12351-PA | 1..253 | 1..253 | 1158 | 87.7 | Plus |