Clone Sequence Records
BS17788.complete Sequence
1262 bp assembled on 2009-12-07
GenBank Submission: KX802890
> BS17788.complete
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCGCAAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTG
AGCAGCAGGCGGCGTCACCAAGGAAGTATGGGCTACCATGGAGATATGTA
CATAGGAAATGATAACGAGAGAAACTCTTATCAGGGACACTTTCAAACGC
GCGATGGCGTCTTGACGGTGACCAATACAGGCCTATATTACGTATACGCC
CAGATATGCTACAACAACTCGCACGACCAGAACGGATTTATCGTCTTTCA
AGGAGACACTCCATTCCTGCAGTGCTTGAACACGGTGCCCACCAACATGC
CACATAAGGTGCACACCTGCCACACGAGTGGTCTGATCCACCTGGAACGA
AACGAGAGGATCCATCTGAAGGACATTCACAACGATCGCAATGCAGTTCT
GCGGGAGGGAAACAACCGAAGCTACTTTGGCATCTTCAAGGTGTAAAAGC
TTTCTAGACCAT
BS17788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 1230 | CG12919-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
egr-RA | 1248 | CG12919-PA | 1..1248 | 17..1246 | 5935 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 2148 | CG12919-RB | 647..1877 | 17..1247 | 6155 | 100 | Plus |
egr-RA | 2166 | CG12919-RA | 647..1895 | 17..1247 | 5940 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10083573..10083939 | 881..1247 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 10082640..10082967 | 312..639 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 10079012..10079182 | 17..187 | 855 | 100 | Plus |
2R | 25286936 | 2R | 10081506..10081632 | 187..313 | 635 | 100 | Plus |
2R | 25286936 | 2R | 10083028..10083134 | 638..744 | 535 | 100 | Plus |
2R | 25286936 | 2R | 10083420..10083494 | 808..882 | 375 | 100 | Plus |
2R | 25286936 | 2R | 10083260..10083326 | 743..809 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:46:28 has no hits.
BS17788.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:47 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:29 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 648..1875 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:21 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 647..1874 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:47 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 639..1880 | 8..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:30 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 647..1874 | 17..1244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:30 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10079012..10079182 | 17..187 | 100 | -> | Plus |
2R | 10081507..10081632 | 188..313 | 100 | -> | Plus |
2R | 10082642..10082967 | 314..639 | 100 | -> | Plus |
2R | 10083030..10083134 | 640..744 | 100 | -> | Plus |
2R | 10083262..10083326 | 745..809 | 100 | -> | Plus |
2R | 10083422..10083493 | 810..881 | 100 | -> | Plus |
2R | 10083574..10083936 | 882..1244 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:21 Download gff for
BS17788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5970927..5970998 | 810..881 | 100 | -> | Plus |
arm_2R | 5966517..5966687 | 17..187 | 100 | -> | Plus |
arm_2R | 5969012..5969137 | 188..313 | 100 | -> | Plus |
arm_2R | 5970147..5970472 | 314..639 | 100 | -> | Plus |
arm_2R | 5970535..5970639 | 640..744 | 100 | -> | Plus |
arm_2R | 5970767..5970831 | 745..809 | 100 | -> | Plus |
arm_2R | 5971079..5971441 | 882..1244 | 100 | | Plus |
BS17788.3prime Sequence
889 bp (806 high quality bases) assembled on 2007-05-29
> BS17788.3prime
ATGGTCTAGAAAGCTTTTACACCTTGAAGATGCCAAAGTAGCTTCGGTTG
TTTCCCTCCCGCAGAACTGCATTGCGATCGTTGTGAATGTCCTTCAGATG
GATCCTCTCGTTTCGTTCCAGGTGGATCAGACCACTCGTGTGGCAGGTGT
GCACCTTATGTGGCATGTTGGTGGGCACCGTGTTCAAGCACTGCAGGAAT
GGAGTGTCTCCTTGAAAGACGATAAATCCGTTCTGGTCGTGCGAGTTGTT
GTAGCATATCTGGGCGTATACGTAATATAGGCCTGTATTGGTCACCGTCA
AGACGCCATCGCGCGTTTGAAAGTGTCCCTGATAAGAGTTTCTCTCGTTA
TCATTTCCTATGTACATATCTCCATGGTAGCCCATACTTCCTTGGTGACG
CCGCCTGCTGCTCAAGTGGAAATGGGCTGCTGGCCTCGAGTCCTCGGATC
TGGCTTTGCGGACTAGGAGGTGGCGATGGCGGGAATGCATTCTGCGACGG
TGGTGAAGTGGTGCAGGGCTCTCTTTGGAAGTTGCCTCATTGGATGACTT
TTCCTGAAGCTCTGTGTGATTTCCTTGAATATTCTGCTCCTCATTGCGTA
CATCGGCAATCGAGCGAGATTTTCTCTCCTGCTTCTTTTTGTGGGCATTG
TAGCTGGTAAAGTCATCGAACACATTGTCATCATTTGAGGCTGAGGATGC
ACTGTCCGTCTCGCCCTCGCCCTCAGCAGTGGTCTCAGATGTGGGCGTGG
TGCCGGTATGTGCATTGTTGAGTTTATTTAACATATCGGTGTAGTCCTCG
TAGTCTGCGCCCACATCATCCACAGAGCTATAGCTAACGTCGTCGTCCTC
GTCGTCCGCAATGGAATCCAGACCATCGCCATCGTCGTC
BS17788.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12919-PB | 1230 | egr-RB | 358..1230 | 889..17 | 4340 | 99.8 | Minus |
CG12919-PA | 1248 | egr-RA | 810..1248 | 455..17 | 2195 | 100 | Minus |
CG12919-PA | 1248 | egr-RA | 358..793 | 889..454 | 2155 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 2148 | CG12919-RB | 1004..1877 | 889..16 | 4355 | 99.9 | Minus |
egr-RA | 2166 | CG12919-RA | 1004..1895 | 889..16 | 4165 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10083573..10083939 | 382..16 | 1835 | 100 | Minus |
2R | 25286936 | 2R | 10082702..10082967 | 889..624 | 1315 | 99.6 | Minus |
2R | 25286936 | 2R | 10083028..10083134 | 625..519 | 535 | 100 | Minus |
2R | 25286936 | 2R | 10083420..10083494 | 455..381 | 375 | 100 | Minus |
2R | 25286936 | 2R | 10083260..10083326 | 520..454 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:59:58 has no hits.
BS17788.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:50 Download gff for
BS17788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12919-PB | 358..1230 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:20 Download gff for
BS17788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 1004..1879 | 11..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:26 Download gff for
BS17788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 1004..1879 | 11..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:26 Download gff for
BS17788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10083422..10083493 | 382..453 | 100 | -> | Minus |
2R | 10082702..10082967 | 624..889 | 99 | -> | Minus |
2R | 10083030..10083134 | 519..623 | 100 | -> | Minus |
2R | 10083262..10083326 | 454..518 | 100 | -> | Minus |
2R | 10083574..10083941 | 11..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:20 Download gff for
BS17788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5970207..5970472 | 624..889 | 99 | -> | Minus |
arm_2R | 5970535..5970639 | 519..623 | 100 | -> | Minus |
arm_2R | 5970767..5970831 | 454..518 | 100 | -> | Minus |
arm_2R | 5970927..5970998 | 382..453 | 100 | -> | Minus |
arm_2R | 5971079..5971446 | 11..381 | 99 | | Minus |
BS17788.5prime Sequence
899 bp (768 high quality bases) assembled on 2007-05-29
> BS17788.5prime
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCGCAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTGA
GCAGCAGGCGGCGTCACAAGGAAGTATGGGCTACCATGGAGATATGTAC
BS17788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12919-PB | 1230 | egr-RB | 1..791 | 17..807 | 3955 | 100 | Plus |
CG12919-PA | 1248 | egr-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
CG12919-PB | 1230 | egr-RB | 791..852 | 806..867 | 310 | 100 | Plus |
CG12919-PA | 1248 | egr-RA | 810..870 | 807..867 | 305 | 100 | Plus |
CG12919-PB | 1230 | egr-RB | 853..885 | 867..899 | 165 | 100 | Plus |
CG12919-PA | 1248 | egr-RA | 871..903 | 867..899 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 2148 | CG12919-RB | 647..1531 | 17..899 | 4375 | 99.8 | Plus |
egr-RA | 2166 | CG12919-RA | 647..1549 | 17..899 | 4195 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10082640..10082967 | 312..639 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 10079012..10079182 | 17..187 | 855 | 100 | Plus |
2R | 25286936 | 2R | 10081506..10081632 | 187..313 | 635 | 100 | Plus |
2R | 25286936 | 2R | 10083028..10083134 | 638..744 | 535 | 100 | Plus |
2R | 25286936 | 2R | 10083260..10083324 | 743..807 | 325 | 100 | Plus |
2R | 25286936 | 2R | 10083420..10083494 | 807..880 | 325 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:18 has no hits.
BS17788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:55 Download gff for
BS17788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12919-PA | 1..793 | 17..808 | 99 | -> | Plus |
CG12919-PA | 812..903 | 809..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:02 Download gff for
BS17788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 638..1531 | 8..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:01 Download gff for
BS17788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 638..1531 | 8..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:01 Download gff for
BS17788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10083030..10083134 | 640..744 | 100 | -> | Plus |
2R | 10083262..10083326 | 745..808 | 98 | -> | Plus |
2R | 10083422..10083493 | 809..879 | 98 | -> | Plus |
2R | 10083574..10083593 | 880..899 | 100 | | Plus |
2R | 10082642..10082967 | 314..639 | 100 | -> | Plus |
2R | 10079007..10079182 | 11..187 | 97 | -> | Plus |
2R | 10081507..10081632 | 188..313 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:02 Download gff for
BS17788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5966512..5966687 | 11..187 | 97 | -> | Plus |
arm_2R | 5969012..5969137 | 188..313 | 100 | -> | Plus |
arm_2R | 5970147..5970472 | 314..639 | 100 | -> | Plus |
arm_2R | 5970535..5970639 | 640..744 | 100 | -> | Plus |
arm_2R | 5970767..5970831 | 745..808 | 98 | -> | Plus |
arm_2R | 5970927..5970998 | 809..879 | 98 | -> | Plus |
arm_2R | 5971079..5971098 | 880..899 | 100 | | Plus |
BS17788.pep Sequence
Translation from 16 to 1245
> BS17788.pep
MTAETLKPFITPTSANDDGFPAKATSTATAQRRTRQLIPLVLGFIGLGLV
VAILALTIWQTTRVSHLDKELKSLKRVVDNLQQRLGINYLDEFDEFQKEY
ENALIDYPKKVDGLTDEEDDDDGDGLDSIADDEDDDVSYSSVDDVGADYE
DYTDMLNKLNNAHTGTTPTSETTAEGEGETDSASSASNDDNVFDDFTSYN
AHKKKQERKSRSIADVRNEEQNIQGNHTELQEKSSNEATSKESPAPLHHR
RRMHSRHRHLLVRKARSEDSRPAAHFHLSSRRRHQGSMGYHGDMYIGNDN
ERNSYQGHFQTRDGVLTVTNTGLYYVYAQICYNNSHDQNGFIVFQGDTPF
LQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIHNDRNAVLREGNN
RSYFGIFKV*
BS17788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-PB | 409 | CG12919-PB | 1..409 | 1..409 | 2162 | 100 | Plus |
egr-PA | 415 | CG12919-PA | 1..415 | 1..409 | 2145 | 98.6 | Plus |