Clone BS17788 Report

Search the DGRC for BS17788

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:177
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptegr-RB
Protein status:BS17788.pep: full length peptide match
Sequenced Size:1262

Clone Sequence Records

BS17788.complete Sequence

1262 bp assembled on 2009-12-07

GenBank Submission: KX802890

> BS17788.complete
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCGCAAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTG
AGCAGCAGGCGGCGTCACCAAGGAAGTATGGGCTACCATGGAGATATGTA
CATAGGAAATGATAACGAGAGAAACTCTTATCAGGGACACTTTCAAACGC
GCGATGGCGTCTTGACGGTGACCAATACAGGCCTATATTACGTATACGCC
CAGATATGCTACAACAACTCGCACGACCAGAACGGATTTATCGTCTTTCA
AGGAGACACTCCATTCCTGCAGTGCTTGAACACGGTGCCCACCAACATGC
CACATAAGGTGCACACCTGCCACACGAGTGGTCTGATCCACCTGGAACGA
AACGAGAGGATCCATCTGAAGGACATTCACAACGATCGCAATGCAGTTCT
GCGGGAGGGAAACAACCGAAGCTACTTTGGCATCTTCAAGGTGTAAAAGC
TTTCTAGACCAT

BS17788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 1230 CG12919-PB 1..1230 17..1246 6150 100 Plus
egr-RA 1248 CG12919-PA 1..1248 17..1246 5935 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2148 CG12919-RB 647..1877 17..1247 6155 100 Plus
egr-RA 2166 CG12919-RA 647..1895 17..1247 5940 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10083573..10083939 881..1247 1835 100 Plus
2R 25286936 2R 10082640..10082967 312..639 1640 100 Plus
2R 25286936 2R 10079012..10079182 17..187 855 100 Plus
2R 25286936 2R 10081506..10081632 187..313 635 100 Plus
2R 25286936 2R 10083028..10083134 638..744 535 100 Plus
2R 25286936 2R 10083420..10083494 808..882 375 100 Plus
2R 25286936 2R 10083260..10083326 743..809 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:46:28 has no hits.

BS17788.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:47 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:29 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 648..1875 17..1244 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:21 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 647..1874 17..1244 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:47 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 639..1880 8..1252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:30 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 647..1874 17..1244 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:30 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10079012..10079182 17..187 100 -> Plus
2R 10081507..10081632 188..313 100 -> Plus
2R 10082642..10082967 314..639 100 -> Plus
2R 10083030..10083134 640..744 100 -> Plus
2R 10083262..10083326 745..809 100 -> Plus
2R 10083422..10083493 810..881 100 -> Plus
2R 10083574..10083936 882..1244 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:21 Download gff for BS17788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5970927..5970998 810..881 100 -> Plus
arm_2R 5966517..5966687 17..187 100 -> Plus
arm_2R 5969012..5969137 188..313 100 -> Plus
arm_2R 5970147..5970472 314..639 100 -> Plus
arm_2R 5970535..5970639 640..744 100 -> Plus
arm_2R 5970767..5970831 745..809 100 -> Plus
arm_2R 5971079..5971441 882..1244 100   Plus

BS17788.3prime Sequence

889 bp (806 high quality bases) assembled on 2007-05-29

> BS17788.3prime
ATGGTCTAGAAAGCTTTTACACCTTGAAGATGCCAAAGTAGCTTCGGTTG
TTTCCCTCCCGCAGAACTGCATTGCGATCGTTGTGAATGTCCTTCAGATG
GATCCTCTCGTTTCGTTCCAGGTGGATCAGACCACTCGTGTGGCAGGTGT
GCACCTTATGTGGCATGTTGGTGGGCACCGTGTTCAAGCACTGCAGGAAT
GGAGTGTCTCCTTGAAAGACGATAAATCCGTTCTGGTCGTGCGAGTTGTT
GTAGCATATCTGGGCGTATACGTAATATAGGCCTGTATTGGTCACCGTCA
AGACGCCATCGCGCGTTTGAAAGTGTCCCTGATAAGAGTTTCTCTCGTTA
TCATTTCCTATGTACATATCTCCATGGTAGCCCATACTTCCTTGGTGACG
CCGCCTGCTGCTCAAGTGGAAATGGGCTGCTGGCCTCGAGTCCTCGGATC
TGGCTTTGCGGACTAGGAGGTGGCGATGGCGGGAATGCATTCTGCGACGG
TGGTGAAGTGGTGCAGGGCTCTCTTTGGAAGTTGCCTCATTGGATGACTT
TTCCTGAAGCTCTGTGTGATTTCCTTGAATATTCTGCTCCTCATTGCGTA
CATCGGCAATCGAGCGAGATTTTCTCTCCTGCTTCTTTTTGTGGGCATTG
TAGCTGGTAAAGTCATCGAACACATTGTCATCATTTGAGGCTGAGGATGC
ACTGTCCGTCTCGCCCTCGCCCTCAGCAGTGGTCTCAGATGTGGGCGTGG
TGCCGGTATGTGCATTGTTGAGTTTATTTAACATATCGGTGTAGTCCTCG
TAGTCTGCGCCCACATCATCCACAGAGCTATAGCTAACGTCGTCGTCCTC
GTCGTCCGCAATGGAATCCAGACCATCGCCATCGTCGTC

BS17788.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12919-PB 1230 egr-RB 358..1230 889..17 4340 99.8 Minus
CG12919-PA 1248 egr-RA 810..1248 455..17 2195 100 Minus
CG12919-PA 1248 egr-RA 358..793 889..454 2155 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2148 CG12919-RB 1004..1877 889..16 4355 99.9 Minus
egr-RA 2166 CG12919-RA 1004..1895 889..16 4165 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10083573..10083939 382..16 1835 100 Minus
2R 25286936 2R 10082702..10082967 889..624 1315 99.6 Minus
2R 25286936 2R 10083028..10083134 625..519 535 100 Minus
2R 25286936 2R 10083420..10083494 455..381 375 100 Minus
2R 25286936 2R 10083260..10083326 520..454 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:59:58 has no hits.

BS17788.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:50 Download gff for BS17788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12919-PB 358..1230 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:20 Download gff for BS17788.3prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1004..1879 11..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:26 Download gff for BS17788.3prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1004..1879 11..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:26 Download gff for BS17788.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10083422..10083493 382..453 100 -> Minus
2R 10082702..10082967 624..889 99 -> Minus
2R 10083030..10083134 519..623 100 -> Minus
2R 10083262..10083326 454..518 100 -> Minus
2R 10083574..10083941 11..381 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:20 Download gff for BS17788.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5970207..5970472 624..889 99 -> Minus
arm_2R 5970535..5970639 519..623 100 -> Minus
arm_2R 5970767..5970831 454..518 100 -> Minus
arm_2R 5970927..5970998 382..453 100 -> Minus
arm_2R 5971079..5971446 11..381 99   Minus

BS17788.5prime Sequence

899 bp (768 high quality bases) assembled on 2007-05-29

> BS17788.5prime
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCGCAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTGA
GCAGCAGGCGGCGTCACAAGGAAGTATGGGCTACCATGGAGATATGTAC

BS17788.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12919-PB 1230 egr-RB 1..791 17..807 3955 100 Plus
CG12919-PA 1248 egr-RA 1..791 17..807 3955 100 Plus
CG12919-PB 1230 egr-RB 791..852 806..867 310 100 Plus
CG12919-PA 1248 egr-RA 810..870 807..867 305 100 Plus
CG12919-PB 1230 egr-RB 853..885 867..899 165 100 Plus
CG12919-PA 1248 egr-RA 871..903 867..899 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2148 CG12919-RB 647..1531 17..899 4375 99.8 Plus
egr-RA 2166 CG12919-RA 647..1549 17..899 4195 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10082640..10082967 312..639 1640 100 Plus
2R 25286936 2R 10079012..10079182 17..187 855 100 Plus
2R 25286936 2R 10081506..10081632 187..313 635 100 Plus
2R 25286936 2R 10083028..10083134 638..744 535 100 Plus
2R 25286936 2R 10083260..10083324 743..807 325 100 Plus
2R 25286936 2R 10083420..10083494 807..880 325 98.7 Plus
Blast to na_te.dros performed on 2015-02-13 15:44:18 has no hits.

BS17788.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:33:55 Download gff for BS17788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12919-PA 1..793 17..808 99 -> Plus
CG12919-PA 812..903 809..899 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:02 Download gff for BS17788.5prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 638..1531 8..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:01 Download gff for BS17788.5prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 638..1531 8..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:01 Download gff for BS17788.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10083030..10083134 640..744 100 -> Plus
2R 10083262..10083326 745..808 98 -> Plus
2R 10083422..10083493 809..879 98 -> Plus
2R 10083574..10083593 880..899 100   Plus
2R 10082642..10082967 314..639 100 -> Plus
2R 10079007..10079182 11..187 97 -> Plus
2R 10081507..10081632 188..313 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:02 Download gff for BS17788.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5966512..5966687 11..187 97 -> Plus
arm_2R 5969012..5969137 188..313 100 -> Plus
arm_2R 5970147..5970472 314..639 100 -> Plus
arm_2R 5970535..5970639 640..744 100 -> Plus
arm_2R 5970767..5970831 745..808 98 -> Plus
arm_2R 5970927..5970998 809..879 98 -> Plus
arm_2R 5971079..5971098 880..899 100   Plus

BS17788.pep Sequence

Translation from 16 to 1245

> BS17788.pep
MTAETLKPFITPTSANDDGFPAKATSTATAQRRTRQLIPLVLGFIGLGLV
VAILALTIWQTTRVSHLDKELKSLKRVVDNLQQRLGINYLDEFDEFQKEY
ENALIDYPKKVDGLTDEEDDDDGDGLDSIADDEDDDVSYSSVDDVGADYE
DYTDMLNKLNNAHTGTTPTSETTAEGEGETDSASSASNDDNVFDDFTSYN
AHKKKQERKSRSIADVRNEEQNIQGNHTELQEKSSNEATSKESPAPLHHR
RRMHSRHRHLLVRKARSEDSRPAAHFHLSSRRRHQGSMGYHGDMYIGNDN
ERNSYQGHFQTRDGVLTVTNTGLYYVYAQICYNNSHDQNGFIVFQGDTPF
LQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIHNDRNAVLREGNN
RSYFGIFKV*

BS17788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
egr-PB 409 CG12919-PB 1..409 1..409 2162 100 Plus
egr-PA 415 CG12919-PA 1..415 1..409 2145 98.6 Plus