Clone Sequence Records
BS17790.3prime Sequence
840 bp (698 high quality bases) assembled on 2007-05-29
> BS17790.3prime
ATGGTCTAGAAAGCTTCTAGACATCCTGCTGCTCCTTGAAGTGGTGATAG
TGGTGGTGGATGTGCTCGTGCACATAGCGGTGTATCATGGAGCTGGAGGC
GCTGGTGTCCAGTTCCACCTCCACCTGCTGGCCAGATTCCTCAGCCTCCA
ACGACTGCTTGCCTCCTTCTGTGACTGCCTCGGCCACAGCCTCGCCCACA
TCGTCGTTGAGATCGATGAGGGTGTCCGTGCTGACCACTTTGCTGGGCGT
ACTGGTCAGCTGCGGACTGGGGGGTAGGTCCTCCTCCTCGCTGGCCAGTA
GATGGGCGCACTCGACGGCATCGCCGTAGATCTTGGAGCCAGCCGAACTG
GAGTTTGATGTCGGTGGTCGCTGCTCCGACCGACTCGCATCCTTGGGCTG
ATCCTGCAGCATCTGGTGTTGCTGCTGCTTGTGCCGCTGTCGCCTCTGCT
CCCGATCCTTCTGCTGCAGCTGCTCACTCAGCTTGGCATAGATGAGGTTG
CCATAGTTCTTGTAGTCCTTGCTGCTCCGCTGCTGTTGCTGCTGCTGCTG
CGACTGCTCCAAACGCTGGTATCCTTGCAGCAGGTTCTTCTGGCTCTTCT
TGGGTATCGGCTGAACGGTCGCCACATTACTGGGCGTGGCCGGGGGCGAG
TGGGCGGCTGCACCGCCCCCACAGATAGTGGCGTGCAGAAAGGAGTCGTA
GCCACACAGATTCAGCTTGTTGTGGGCCGTGTTGTGCGTCTGCTGGGCGG
CCAGAACGGCCGGATTAATGGCCAACTGCTGATGGTAGATAGGTATGTGC
GGTTGGGGATGCTCGTGGTGGTTGTGGTGGCTGGGATGAG
BS17790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11614-PA | 2787 | nkd-RA | 1964..2787 | 840..17 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RC | 4685 | CG11614-RC | 2680..3503 | 840..17 | 4120 | 100 | Minus |
| nkd-RB | 4674 | CG11614-RB | 2669..3492 | 840..17 | 4120 | 100 | Minus |
| nkd-RA | 5051 | CG11614-RA | 3046..3869 | 840..17 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19004923..19005746 | 17..840 | 4120 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6884 | 558..397 | 278 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2536 | 613..396 | 255 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6948 | 592..393 | 238 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2511 | 592..397 | 225 | 59.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6892 | 503..321 | 189 | 59.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1149 | 484..405 | 184 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2664 | 614..397 | 176 | 58.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2845 | 602..390 | 175 | 58.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6871 | 474..355 | 174 | 61.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2436 | 474..351 | 165 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2425 | 526..414 | 156 | 60.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1152 | 474..414 | 152 | 72.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6788 | 485..397 | 148 | 62.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 472..400 | 142 | 68.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6842 | 512..397 | 136 | 58.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2870 | 466..404 | 135 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6441..6570 | 526..396 | 120 | 59.7 | Minus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..962 | 621..498 | 110 | 59.4 | Minus |
BS17790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:10 Download gff for
BS17790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11614-PA | 1964..2787 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:22 Download gff for
BS17790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 3046..3872 | 12..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:51 Download gff for
BS17790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 3046..3872 | 12..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:51 Download gff for
BS17790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19004927..19005746 | 21..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:22 Download gff for
BS17790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18998027..18998846 | 21..840 | 100 | | Plus |
BS17790.5prime Sequence
894 bp (784 high quality bases) assembled on 2007-05-29
> BS17790.5prime
GAAGTTATCAGTCGACATGGCGGGTAACATTGTCAAATGGTGGAAGCATA
AAATTCTCGGCGGCTACAAACAATTCTCAGTCCAGGAATGCACCACAGAC
TCCGAGGAGCTGATGTACCACCAGGTGCGGGCCTCCTCCTCCTGCAGCGC
CCCGCCCGATTTGCTGCTGGTCAGCGAACGTGACAATAATATCCAACTGC
GATCGCCGGTAGTGAACATAATCACCACGCCGCCGGGCAATGCGTCTGGT
GCGGGAAGTAAGCAGCAGTCTCATCACCAGACGAACCACCACTCCTCGGG
CAGGAGTCATCCCGGGCACACGGCACATCCGCAGGATGTGAGCAGCGGCG
GCAGCCATAGCAAGCATCTGCGCATCAGCAGCACTTCCAATGGCAAGCAC
GGCAAATACTCAAATATGCAGCAGCAACTGCCGCAGGATGAGGATGTGGT
GGATGCGGCTGCCACGATGCAGCAGCAGCAGCACACTGGCCACGCCCACT
CGCGCCACCTGCACCACCACAAGGAGGAGCGCATCCGACTGGAGGAATTC
ACCTGCGACGTGTCCGTGGAGGGCGGCAAGTCATCGCAGCCGCTGCAGTT
CTCGTTCACGTTCTACGACCTGGACGGGCATCACGGCAAGATAACAAAGG
ACGACATCGTGGGCATTGTGTACACCATATACGAGTCCATTGGCAAGTCG
GTGGTGGTGCCCCACTGCGGCAGCAAGACAATCAACGTGCGCCTCACCGT
CAGTCCCGAGGGCAAATCGAAATCGCAGCCGGTGGTGCCCGTTCCGGTGG
CAGCCGGATTCAGCAGCAGCCACGCCAGCAAACTGAAGAAGTTGCCCACG
GGTCTGGCGGCCATGTCGAAACCCCTGGCCGGCGGAGGAGTGGG
BS17790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11614-PA | 2787 | nkd-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RC | 4685 | CG11614-RC | 1083..1960 | 17..894 | 4390 | 100 | Plus |
| nkd-RB | 4674 | CG11614-RB | 1083..1960 | 17..894 | 4390 | 100 | Plus |
| nkd-RA | 5051 | CG11614-RA | 1083..1960 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19010594..19011061 | 545..78 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 19007905..19008256 | 894..543 | 1760 | 100 | Minus |
| 3L | 28110227 | 3L | 19044304..19044367 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10637..10813 | 307..484 | 183 | 61.7 | Plus |
BS17790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:15 Download gff for
BS17790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11614-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:01 Download gff for
BS17790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1078..1960 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:39 Download gff for
BS17790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1078..1960 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:39 Download gff for
BS17790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19007905..19008254 | 545..894 | 100 | <- | Minus |
| 3L | 19010595..19011058 | 81..544 | 100 | <- | Minus |
| 3L | 19044304..19044372 | 9..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:01 Download gff for
BS17790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19001005..19001354 | 545..894 | 100 | <- | Minus |
| arm_3L | 19003695..19004158 | 81..544 | 100 | <- | Minus |
| arm_3L | 19037404..19037472 | 9..80 | 95 | | Minus |
BS17790.complete Sequence
2819 bp assembled on 2010-05-14
GenBank Submission: KX803542
> BS17790.complete
GAAGTTATCAGTCGACATGGCGGGTAACATTGTCAAATGGTGGAAGCATA
AAATTCTCGGCGGCTACAAACAATTCTCAGTCCAGGAATGCACCACAGAC
TCCGAGGAGCTGATGTACCACCAGGTGCGGGCCTCCTCCTCCTGCAGCGC
CCCGCCCGATTTGCTGCTGGTCAGCGAACGTGACAATAATATCCAACTGC
GATCGCCGGTAGTGAACATAATCACCACGCCGCCGGGCAATGCGTCTGGT
GCGGGAAGTAAGCAGCAGTCTCATCACCAGACGAACCACCACTCCTCGGG
CAGGAGTCATCCCGGGCACACGGCACATCCGCAGGATGTGAGCAGCGGCG
GCAGCCATAGCAAGCATCTGCGCATCAGCAGCACTTCCAATGGCAAGCAC
GGCAAATACTCAAATATGCAGCAGCAACTGCCGCAGGATGAGGATGTGGT
GGATGCGGCTGCCACGATGCAGCAGCAGCAGCACACTGGCCACGCCCACT
CGCGCCACCTGCACCACCACAAGGAGGAGCGCATCCGACTGGAGGAATTC
ACCTGCGACGTGTCCGTGGAGGGCGGCAAGTCATCGCAGCCGCTGCAGTT
CTCGTTCACGTTCTACGACCTGGACGGGCATCACGGCAAGATAACAAAGG
ACGACATCGTGGGCATTGTGTACACCATATACGAGTCCATTGGCAAGTCG
GTGGTGGTGCCCCACTGCGGCAGCAAGACAATCAACGTGCGCCTCACCGT
CAGTCCCGAGGGCAAATCGAAATCGCAGCCGGTGGTGCCCGTTCCGGTGG
CAGCCGGATTCAGCAGCAGCCACGCCAGCAAACTGAAGAAGTTGCCCACG
GGTCTGGCGGCCATGTCGAAACCCCTGGCCGGCGGAGGAGTGGGATCCGG
CGGAGCGTCGGCGCTAACGACATCCGCCGGCAACCGCCGCCAGCATCGCT
ATCGACCACGCAAACTGATTAAGTCCGATGACGAGGACGATGACAGCAAC
AGCGAAAAGGAGAAGGACGCCGCCCACGCCCCTGCCGCCGACCAGCCCAG
CGGAAGTGGAACAAAGGCGACTGGGAAGAGCCATCACCACCAGTCGCAGT
CCGCCAGGTATCACCAGAAGAACAATTCCCGGGCGGAGCAGTGCTGCACG
GAACAGAATACGCCCGACAATGGCCACAATACCTACGAGAATATGCTGAA
TCTCAAGTGCTGCAAGCCGGAGGTGGACCAGGTGGACTGTCCCTCGCACC
GACAGCACCACCAGAGCCACCCGAACCATCAAATGCGCCAGCAGGACATC
TACATGAAGCAGGCCACCCAGCGGGTCAAGATGTTGCGAAGGGCGCGCAA
ACAAAAGTACCAGGACCACTGCCTCGAAACGCGACAGCGCAGCCTGTCAG
TGGGCAACGATTCCGCCTGCCCGAATCGCCATCTGCAGCTGCAGCAGCCG
CCGGTGGGTCACCCCCAGCCCCAGTCGCTGAACCACAAGAGCGCGTCGGG
GTCACCACCGCTGGGCGTGGGGGGTGGTGGCGACATGATGCTCGATGGGG
TGCAGCTGCGTCAGCCGCGACCCCATTCCCTCACCCCGCATCAGCATCAA
CAGCAAAATCAGCAGCAGCAGCAGCAGCAGCGAAAATCGGCCGAGTGCTG
GAAATCGGCGCTGAATCGCAACGATTTAATTAGCATCATCAGGGAGAGCA
TGGAGAAGAACCGCCTGTGTTTTCAGCTGAATGGAAAACCCCAAGCCAAT
GTGAGTCCCATACGGCAACCGGCAGCACAACAACAACCACAACAACAGCA
ACGCCAACGCTGCAATACGGGCTCGAAAATACCCACGTTAATTACCAACC
ACAGTCCGGTCGCCCAGCAGTCGCCGCTCAGCTGCAGTCCACCCACGGCG
GAGCCCACCACCCCCAGCATTCCAGCAGCTCCGCCGGCCATCGAGGTCAA
CGGTCAGCAGCACCACCCCACTCATCCCACTCATCCCAGCCACCACAACC
ACCACGAGCATCCCCAACCGCACATACCTATCTACCATCAGCAGTTGGCC
ATTAATCCGGCCGTTCTGGCCGCCCAGCAGACGCACAACACGGCCCACAA
CAAGCTGAATCTGTGTGGCTACGACTCCTTTCTGCACGCCACTATCTGTG
GGGGCGGTGCAGCCGCCCACTCGCCCCCGGCCACGCCCAGTAATGTGGCG
ACCGTTCAGCCGATACCCAAGAAGAGCCAGAAGAACCTGCTGCAAGGATA
CCAGCGTTTGGAGCAGTCGCAGCAGCAGCAGCAACAGCAGCGGAGCAGCA
AGGACTACAAGAACTATGGCAACCTCATCTATGCCAAGCTGAGTGAGCAG
CTGCAGCAGAAGGATCGGGAGCAGAGGCGACAGCGGCACAAGCAGCAGCA
ACACCAGATGCTGCAGGATCAGCCCAAGGATGCGAGTCGGTCGGAGCAGC
GACCACCGACATCAAACTCCAGTTCGGCTGGCTCCAAGATCTACGGCGAT
GCCGTCGAGTGCGCCCATCTACTGGCCAGCGAGGAGGAGGACCTACCCCC
CAGTCCGCAGCTGACCAGTACGCCCAGCAAAGTGGTCAGCACGGACACCC
TCATCGATCTCAACGACGATGTGGGCGAGGCTGTGGCCGAGGCAGTCACA
GAAGGAGGCAAGCAGTCGTTGGAGGCTGAGGAATCTGGCCAGCAGGTGGA
GGTGGAACTGGACACCAGCGCCTCCAGCTCCATGATACACCGCTATGTGC
ACGAGCACATCCACCACCACTATCACCACTTCAAGGAGCAGCAGGATGTC
TAGAAGCTTTCTAGACCAT
BS17790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RA | 2787 | CG11614-PA | 1..2787 | 17..2803 | 13935 | 100 | Plus |
| nkd-RC | 2421 | CG11614-PC | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| nkd-RB | 1662 | CG11614-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| nkd-RC | 2421 | CG11614-PC | 1352..2421 | 1734..2803 | 5350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RA | 5051 | CG11614-RA | 1083..3869 | 17..2803 | 13935 | 100 | Plus |
| nkd-RC | 4685 | CG11614-RC | 1083..2423 | 17..1357 | 6705 | 100 | Plus |
| nkd-RB | 4674 | CG11614-RB | 1083..2423 | 17..1357 | 6705 | 100 | Plus |
| nkd-RC | 4685 | CG11614-RC | 2434..3503 | 1734..2803 | 5350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19004923..19005992 | 2803..1734 | 5350 | 100 | Minus |
| 3L | 28110227 | 3L | 19007442..19008256 | 1357..543 | 4075 | 100 | Minus |
| 3L | 28110227 | 3L | 19010594..19011061 | 545..78 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 19006546..19006924 | 1734..1356 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 19044304..19044367 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6884 | 2262..2423 | 278 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2536 | 2207..2424 | 255 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6948 | 2228..2427 | 238 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2511 | 2228..2423 | 225 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..3000 | 2207..2417 | 208 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6892 | 2317..2499 | 189 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1149 | 2336..2415 | 184 | 70 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10637..10813 | 307..484 | 183 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2664 | 2206..2423 | 176 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2845 | 2218..2430 | 175 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6871 | 2346..2465 | 174 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2436 | 2346..2469 | 165 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2425 | 2294..2406 | 156 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1152 | 2346..2406 | 152 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6788 | 2335..2423 | 148 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 2348..2420 | 142 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6842 | 2308..2423 | 136 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2870 | 2354..2416 | 135 | 68.3 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 733..780 | 913..960 | 132 | 75 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3596..3624 | 1780..1808 | 127 | 93.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2421 | 1763..1808 | 122 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6441..6570 | 2294..2424 | 120 | 59.7 | Plus |
BS17790.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-14 09:29:39 Download gff for
BS17790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 965..3751 | 17..2803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:50 Download gff for
BS17790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1083..3869 | 17..2803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:52 Download gff for
BS17790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1083..3869 | 17..2803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:52 Download gff for
BS17790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19007442..19008254 | 545..1357 | 100 | <- | Minus |
| 3L | 19004923..19005991 | 1735..2803 | 100 | <- | Minus |
| 3L | 19006546..19006922 | 1358..1734 | 100 | <- | Minus |
| 3L | 19010595..19011058 | 81..544 | 100 | <- | Minus |
| 3L | 19044304..19044367 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:50 Download gff for
BS17790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18998023..18999091 | 1735..2803 | 100 | <- | Minus |
| arm_3L | 18999646..19000022 | 1358..1734 | 100 | <- | Minus |
| arm_3L | 19000542..19001354 | 545..1357 | 100 | <- | Minus |
| arm_3L | 19003695..19004158 | 81..544 | 100 | <- | Minus |
| arm_3L | 19037404..19037467 | 17..80 | 100 | | Minus |
BS17790.pep Sequence
Translation from 16 to 2802
> BS17790.pep
MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL
LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQSHHQTNHHSSGRSHPG
HTAHPQDVSSGGSHSKHLRISSTSNGKHGKYSNMQQQLPQDEDVVDAAAT
MQQQQHTGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTFY
DLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEGK
SKSQPVVPVPVAAGFSSSHASKLKKLPTGLAAMSKPLAGGGVGSGGASAL
TTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAAHAPAADQPSGSGTK
ATGKSHHHQSQSARYHQKNNSRAEQCCTEQNTPDNGHNTYENMLNLKCCK
PEVDQVDCPSHRQHHQSHPNHQMRQQDIYMKQATQRVKMLRRARKQKYQD
HCLETRQRSLSVGNDSACPNRHLQLQQPPVGHPQPQSLNHKSASGSPPLG
VGGGGDMMLDGVQLRQPRPHSLTPHQHQQQNQQQQQQQRKSAECWKSALN
RNDLISIIRESMEKNRLCFQLNGKPQANVSPIRQPAAQQQPQQQQRQRCN
TGSKIPTLITNHSPVAQQSPLSCSPPTAEPTTPSIPAAPPAIEVNGQQHH
PTHPTHPSHHNHHEHPQPHIPIYHQQLAINPAVLAAQQTHNTAHNKLNLC
GYDSFLHATICGGGAAAHSPPATPSNVATVQPIPKKSQKNLLQGYQRLEQ
SQQQQQQQRSSKDYKNYGNLIYAKLSEQLQQKDREQRRQRHKQQQHQMLQ
DQPKDASRSEQRPPTSNSSSAGSKIYGDAVECAHLLASEEEDLPPSPQLT
STPSKVVSTDTLIDLNDDVGEAVAEAVTEGGKQSLEAEESGQQVEVELDT
SASSSMIHRYVHEHIHHHYHHFKEQQDV*
BS17790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-PA | 928 | CG11614-PA | 1..928 | 1..928 | 4962 | 100 | Plus |
| nkd-PC | 806 | CG11614-PC | 1..806 | 1..928 | 3721 | 80.5 | Plus |
| nkd-PB | 553 | CG11614-PB | 1..488 | 1..487 | 2401 | 93.7 | Plus |
| X11Lbeta-PD | 2066 | CG32677-PD | 21..509 | 411..847 | 204 | 23.6 | Plus |
| X11Lbeta-PE | 2129 | CG32677-PE | 21..509 | 411..847 | 204 | 23.6 | Plus |
