Clone Sequence Records
BS17791.complete Sequence
1142 bp assembled on 2010-02-09
GenBank Submission: KX806334
> BS17791.complete
GAAGTTATCAGTCGACATGCATTCCGCGATCCTGGAGGACTCGCCCAACG
CGCGCATCAACAAGACGATCCTCGATCGCTATCTTTCACTGCCGCTGCAG
GAGAACATCGTTCAGGCCACCTACGTGTGGATCGATGGCACCGGCGAGGA
TTTGCGCTGCAAGGATCGCACCCTCGACTTCATTCCCCAGAGTCCCAAGG
AGCTACCCGTTTGGAACTACGATGGAAGCTCGTGCTACCAGGCCGAGGGA
TCCAACTCGGACACCTACCTGTATCCGGTGGCCATCTACAAGGACCCGTT
CCGGCGCGGCAACAACATCCTGGTGATGTGCGACACCTACAAGTTCGACG
GCACCCCCACGGACACCAACAAGCGCAAGACCTGCCTGGAGGTGGCCAAC
AAGTGCGCCGCAGAGGAGCCCTGGTTCGGTATTGAGCAGGAGTACACCTT
CCTCGACTTTGATGGCCATCCATTGGGCTGGCCCAAGAACGGTTTCCCCG
GACCCCAGGGACCCTACTATTGCGGCGTTGGTGCCAACAAGGTCTACGCC
CGCGACATTGTGGATGCCCACTATCGCGCCTGTCTGTACGCCGGCATCAA
GGTGTCCGGCACCAATGCCGAGGTGATGCCCGCCCAGTGGGAGTTCCAGG
TGGGACCCTGCGAGGGCATCTCCATTGGTGATGATCTCTGGATGGCCCGT
TTCCTCTTGCATCGCATCTCCGAGGAGTTTGGCATTGTGTCCACTCTGGA
TCCCAAGCCGATGCCTGGCGATTGGAACGGTGCTGGTGCCCACACCAATG
TGTCGACGAAGGCAATGCGCGAAGATGGCGGCATTCGGGACATTGAGAAG
GCGGTGGCCAAGCTGTCCAAGTGCCACGAGAGGCACATTCGCGCCTACGA
TCCCAAGCAGGGACAGGACAATGCCCGTCGTCTGACCGGAAAGCACGAGA
CGAGCTCCATCAACGATTTCAGTGCCGGCGTGGCCAATCGCGGATGCAGC
ATACGCATTCCTCGCGGCGTCAATGATGATGGCAAGGGCTATTTCGAGGA
TCGCCGCCCCAGCTCCAACTGCGATCCCTACTCCGTGGTGGAGGCCATCT
TGCGCACCATCTGCCTGGACGAATAGAAGCTTTCTAGACCAT
BS17791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs2-RB | 1110 | CG1743-PB | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Gs2-RF | 1110 | CG1743-PF | 12..1110 | 28..1126 | 5495 | 100 | Plus |
Gs2-RE | 1110 | CG1743-PE | 12..1110 | 28..1126 | 5495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs2-RB | 1906 | CG1743-RB | 231..1340 | 17..1126 | 5550 | 100 | Plus |
Gs2-RF | 1990 | CG1743-RF | 326..1424 | 28..1126 | 5495 | 100 | Plus |
Gs2-RE | 1829 | CG1743-RE | 165..1263 | 28..1126 | 5495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11429239..11429631 | 734..1126 | 1965 | 100 | Plus |
X | 23542271 | X | 11428528..11428871 | 200..543 | 1720 | 100 | Plus |
X | 23542271 | X | 11428980..11429173 | 540..733 | 970 | 100 | Plus |
X | 23542271 | X | 11424282..11424454 | 28..200 | 865 | 100 | Plus |
2L | 23513712 | 2L | 132973..133207 | 414..648 | 380 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:20 has no hits.
BS17791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:48 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 1..1110 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:14 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 208..1317 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:52 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 231..1340 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:49 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 201..1317 | 9..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:21 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 231..1340 | 17..1126 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:21 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11424282..11424454 | 28..200 | 100 | -> | Plus |
X | 11428529..11428869 | 201..541 | 100 | -> | Plus |
X | 11428982..11429173 | 542..733 | 100 | -> | Plus |
X | 11429239..11429631 | 734..1126 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:52 Download gff for
BS17791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11322562..11322902 | 201..541 | 100 | -> | Plus |
arm_X | 11318315..11318487 | 28..200 | 100 | -> | Plus |
arm_X | 11323015..11323206 | 542..733 | 100 | -> | Plus |
arm_X | 11323272..11323664 | 734..1126 | 100 | | Plus |
BS17791.3prime Sequence
818 bp (691 high quality bases) assembled on 2007-05-29
> BS17791.3prime
ATGGTCTAGAAAGCTTCTATTCGTCCAGGCAGATGGTGCGCAAGATGGCC
TCCACCACGGAGTAGGGATCGCAGTTGGAGCTGGGGCGGCGATCCTCGAA
ATAGCCCTTGCCATCATCATTGACGCCGCGAGGAATGCGTATGCTGCATC
CGCGATTGGCCACGCCGGCACTGAAATCGTTGATGGAGCTCGTCTCGTGC
TTTCCGGTCAGACGACGGGCATTGTCCTGTCCCTGCTTGGGATCGTAGGC
GCGAATGTGCCTCTCGTGGCACTTGGACAGCTTGGCCACCGCCTTCTCAA
TGTCCCGAATGCCGCCATCTTCGCGCATTGCCTTCGTCGACACATTGGTG
TGGGCACCAGCACCGTTCCAATCGCCAGGCATCGGCTTGGGATCCAGAGT
GGACACAATGCCAAACTCCTCGGAGATGCGATGCAAGAGGAAACGGGCCA
TCCAGAGATCATCACCAATGGAGATGCCCTCGCAGGGTCCCACCTGGAAC
TCCCACTGGGCGGGCATCACCTCGGCATTGGTGCCGGACACCTTGATGCC
GGCGTACAGACAGGCGCGATAGTGGGCATCCACAATGTCGCGGGCGTAGA
CCTTGTTGGCACCAACGCCGCAATAGTAGGGTCCCTGGGGTCCGGGGAAA
CCGTTCTTGGGCCAGCCCAATGGATGGCCATCAAAGTCGAGGAAGGTGTA
CTCCTGCTCAATACCGAACCAGGGCTCCTCTGCGGCGCACTTGTTGGCCA
CCTCCAGGCAGGTCTTGCGCTTGTTGGTGTCCGTGGGGGTGCCGTCGAAC
TTGTAGGTGTCGCACATC
BS17791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1743-PB | 1110 | Gs2-RB | 309..1110 | 818..17 | 4010 | 100 | Minus |
CG1743-PC | 1110 | Gs2-RC | 309..1110 | 818..17 | 4010 | 100 | Minus |
CG1743-PA | 801 | Gs2-RA | 1..801 | 817..17 | 4005 | 100 | Minus |
CG2718-PC | 1200 | Gs1-RC | 683..725 | 537..495 | 165 | 95.3 | Minus |
CG2718-PB | 1200 | Gs1-RB | 683..725 | 537..495 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs2-RF | 1990 | CG1743-RF | 623..1424 | 818..17 | 4010 | 100 | Minus |
Gs2-RE | 1829 | CG1743-RE | 462..1263 | 818..17 | 4010 | 100 | Minus |
Gs2-RD | 1918 | CG1743-RD | 551..1352 | 818..17 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11429239..11429631 | 409..17 | 1965 | 100 | Minus |
X | 23542271 | X | 11428653..11428871 | 818..600 | 1095 | 100 | Minus |
X | 23542271 | X | 11428980..11429173 | 603..410 | 970 | 100 | Minus |
2L | 23513712 | 2L | 132973..133207 | 729..495 | 380 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:47:02 has no hits.
BS17791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:21 Download gff for
BS17791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1743-PC | 309..1110 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:46 Download gff for
BS17791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RD | 551..1352 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:40 Download gff for
BS17791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RD | 551..1352 | 17..818 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:40 Download gff for
BS17791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11428653..11428869 | 602..818 | 100 | -> | Minus |
X | 11428982..11429173 | 410..601 | 100 | -> | Minus |
X | 11429239..11429631 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:46 Download gff for
BS17791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11322686..11322902 | 602..818 | 100 | -> | Minus |
arm_X | 11323015..11323206 | 410..601 | 100 | -> | Minus |
arm_X | 11323272..11323664 | 17..409 | 100 | | Minus |
BS17791.5prime Sequence
787 bp (754 high quality bases) assembled on 2007-05-29
> BS17791.5prime
GAAGTTATCAGTCGACATGCATTCCGCGATCCTGGAGGACTCGCCCAACG
CGCGCATCAACAAGACGATCCTCGATCGCTATCTTTCACTGCCGCTGCAG
GAGAACATCGTTCAGGCCACCTACGTGTGGATCGATGGCACCGGCGAGGA
TTTGCGCTGCAAGGATCGCACCCTCGACTTCATTCCCCAGAGTCCCAAGG
AGCTACCCGTTTGGAACTACGATGGAAGCTCGTGCTACCAGGCCGAGGGA
TCCAACTCGGACACCTACCTGTATCCGGTGGCCATCTACAAGGACCCGTT
CCGGCGCGGCAACAACATCCTGGTGATGTGCGACACCTACAAGTTCGACG
GCACCCCCACGGACACCAACAAGCGCAAGACCTGCCTGGAGGTGGCCAAC
AAGTGCGCCGCAGAGGAGCCCTGGTTCGGTATTGAGCAGGAGTACACCTT
CCTCGACTTTGATGGCCATCCATTGGGCTGGCCCAAGAACGGTTTCCCCG
GACCCCAGGGACCCTACTATTGCGGCGTTGGTGCCAACAAGGTCTACGCC
CGCGACATTGTGGATGCCCACTATCGCGCCTGTCTGTACGCCGGCATCAA
GGTGTCCGGCACCAATGCCGAGGTGATGCCCGCCCAGTGGGAGTTCCAGG
TGGGACCCTGCGAGGGCATCTCCATTGGTGATGATCTCTGGATGGCCCGT
TTCCTCTTGCATCGCATCTCCGAGGAGTTTGGCATTGTGTCCACTCTGGA
TCCCAAGCCGATGCCTGGCGATTGGAACGGTGCTGGT
BS17791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1743-PB | 1110 | Gs2-RB | 1..771 | 17..787 | 3855 | 100 | Plus |
CG1743-PC | 1110 | Gs2-RC | 12..771 | 28..787 | 3800 | 100 | Plus |
CG1743-PA | 801 | Gs2-RA | 1..462 | 326..787 | 2310 | 100 | Plus |
CG2718-PC | 1200 | Gs1-RC | 683..725 | 606..648 | 165 | 95.3 | Plus |
CG2718-PB | 1200 | Gs1-RB | 683..725 | 606..648 | 165 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs2-RB | 1906 | CG1743-RB | 231..1001 | 17..787 | 3855 | 100 | Plus |
Gs2-RF | 1990 | CG1743-RF | 326..1085 | 28..787 | 3800 | 100 | Plus |
Gs2-RE | 1829 | CG1743-RE | 165..924 | 28..787 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11428528..11428871 | 200..543 | 1720 | 100 | Plus |
X | 23542271 | X | 11428980..11429173 | 540..733 | 970 | 100 | Plus |
X | 23542271 | X | 11424282..11424454 | 28..200 | 865 | 100 | Plus |
2L | 23513712 | 2L | 132973..133207 | 414..648 | 380 | 77.4 | Plus |
X | 23542271 | X | 11429239..11429292 | 734..787 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:24 has no hits.
BS17791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:34:26 Download gff for
BS17791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1743-PB | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:04 Download gff for
BS17791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 224..1001 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:22 Download gff for
BS17791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs2-RB | 224..1001 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:22 Download gff for
BS17791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11424282..11424454 | 28..200 | 100 | -> | Plus |
X | 11428529..11428869 | 201..541 | 100 | -> | Plus |
X | 11428982..11429173 | 542..733 | 100 | -> | Plus |
X | 11429239..11429292 | 734..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:04 Download gff for
BS17791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11318315..11318487 | 28..200 | 100 | -> | Plus |
arm_X | 11322562..11322902 | 201..541 | 100 | -> | Plus |
arm_X | 11323015..11323206 | 542..733 | 100 | -> | Plus |
arm_X | 11323272..11323325 | 734..787 | 100 | | Plus |
BS17791.pep Sequence
Translation from 16 to 1125
> BS17791.pep
MHSAILEDSPNARINKTILDRYLSLPLQENIVQATYVWIDGTGEDLRCKD
RTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNN
ILVMCDTYKFDGTPTDTNKRKTCLEVANKCAAEEPWFGIEQEYTFLDFDG
HPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTN
AEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMP
GDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQ
DNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSS
NCDPYSVVEAILRTICLDE*
BS17791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs2-PB | 369 | CG1743-PB | 1..369 | 1..369 | 2021 | 100 | Plus |
Gs2-PD | 373 | CG1743-PD | 1..373 | 1..369 | 2006 | 98.9 | Plus |
Gs2-PF | 369 | CG1743-PF | 1..369 | 1..369 | 2004 | 99.2 | Plus |
Gs2-PE | 369 | CG1743-PE | 1..369 | 1..369 | 2004 | 99.2 | Plus |
Gs2-PC | 369 | CG1743-PC | 1..369 | 1..369 | 2004 | 99.2 | Plus |