Clone Sequence Records
BS17802.complete Sequence
1367 bp assembled on 2009-12-07
GenBank Submission: KX800220
> BS17802.complete
GAAGTTATCAGTCGACATGGCCACCGAAGAGGACATCCCCAGAATCCAAT
TGGGCGACTACATCGTCATCCAGCGGCAGAAATATACGAAGCTACAAAAA
TTCGGCAGTCTGGACACCACGGCCACATTGGGCAAAGAAACACTGGAGCT
GAAGTCTCTTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGTCA
AAGAGACAAAGCCGGGTAAAAGGGGCGCCCAGAGACAACACACCTTGGAG
CTGTGCAGCGAGACTGAGCTGAGAAGCACGCGAGAGGTTCTGGGCATCTC
CAGCAGTGGAGCGGATAATCGGGACATCCGGGATGATGGAGAAGCGCAGA
CCCTGAAACCAGAGGACATTGCGCAGCTGCGTGAGGAGTGCAACGACTCC
AGCAAAATCATCGAGAAGCTGGTGGAGAATTCTAAGACTTTCCACAACCG
AACGGAGTACTCCCAAGAGAAGTACCTGCTAAAGAAGGAGAAAAAGTATT
TCGAGTTCGTTCAAATCCGCCAGCCAACGATCCGTCTGATGCTGGACATC
TTCTACCGCCAAGACTCGGAAAAGGTCATGGGCATTCGCGTTGACACTTT
ATCGCAAATTATTTCTTACTCGGGCGTTTGTGGATTCGGCAGCTATCTGC
TGTACGAGAGTGGTACCAATGGTCTACTGCCGGCTGCCATGCTCAACTCT
ATAGGCGCAGGCACGGAGGGCACCCTGGTGCACATGCACCCGGGCAATGT
GCCCCAGAAGCAGGCGCTCTCAGCTCTGAAACTACCCCTGGAGCAGCAAC
AGCGATGTGTTTCCGTTAATCTCTATTCCGTTTTAAGGGAGTTTTACCAA
GGAGGGGACGCGAAGGCCACAGATATTCCCGTTGTGGAGCCCAGTGAAAA
CGAACCTCAGGAAACCCAGCTGGAGACGCCAACGGAGGAACAACCTGAGG
CGATAGAACCGACCACAAAGAAACCCAAGCTGGATGAGTCAAATAGTGGT
AGAGAAGGAGCAAAGGGACCTCCGCGCTGGCATTTGGAAAACAAGCGGGC
CACGGCCCTGATGCACGCCGAATTCGACAGTCTGGTGGTGGCCGCCAAGG
AGCACCCATCCAACATTCTGCAAGCCCTGCTGCCTCTTGTGAAACCCTCA
AGACCCGTGGTGGTATTCAGCACCTGCAAGGAGCTGTTACAAGAGACATT
CATGGAGCTGAAAACAACAGGCAAGGTGACGGGTCTGCACTTGACCTCGA
ACTGGCTGCGCACCTACCAGATCCTGCCCAATCGCACACATCCGGAAGTG
AATATGAGCGGAAATAGTGGCTACCTTTTGACGGGCTATACGCTTAGATA
GAAGCTTTCTAGACCAT
BS17802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1335 | CG9596-PD | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| CG9596-RC | 1335 | CG9596-PC | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| CG9596-RB | 1335 | CG9596-PB | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 236..1571 | 16..1351 | 6680 | 100 | Plus |
| CG9596-RC | 2175 | CG9596-RC | 93..1428 | 16..1351 | 6680 | 100 | Plus |
| CG9596-RB | 1470 | CG9596-RB | 93..1428 | 16..1351 | 6680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560576..6561568 | 1008..16 | 4965 | 100 | Minus |
| 2L | 23513712 | 2L | 6560173..6560518 | 1351..1006 | 1730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:46:45 has no hits.
BS17802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:39 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 1..1335 | 17..1351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:31 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 94..1428 | 17..1351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:28 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 94..1428 | 17..1351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:39 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 42..1382 | 16..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:37 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 94..1428 | 17..1351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:37 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560173..6560516 | 1008..1351 | 100 | <- | Minus |
| 2L | 6560577..6561567 | 17..1007 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:28 Download gff for
BS17802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560173..6560516 | 1008..1351 | 100 | <- | Minus |
| arm_2L | 6560577..6561567 | 17..1007 | 100 | | Minus |
BS17802.3prime Sequence
886 bp (765 high quality bases) assembled on 2007-05-30
> BS17802.3prime
ATGGTCTAGAAAGCTTCTATCTAAGCGTATAGCCCGTCAAAAGGTAGCCA
CTATTTCCGCTCATATTCACTTCCGGATGTGTGCGATTGGGCAGGATCTG
GTAGGTGCGCAGCCAGTTCGAGGTCAAGTGCAGACCCGTCACCTTGCCTG
TTGTTTTCAGCTCCATGAATGTCTCTTGTAACAGCTCCTTGCAGGTGCTG
AATACCACCACGGGTCTTGAGGGTTTCACAAGAGGCAGCAGGGCTTGCAG
AATGTTGGATGGGTGCTCCTTGGCGGCCACCACCAGACTGTCGAATTCGG
CGTGCATCAGGGCCGTGGCCCGCTTGTTTTCCAAATGCCAGCGCGGAGGT
CCCTTTGCTCCTTCTCTACCACTATTTGACTCATCCAGCTTGGGTTTCTT
TGTGGTCGGTTCTATCGCCTCAGGTTGTTCCTCCGTTGGCGTCTCCAGCT
GGGTTTCCTGAGGTTCGTTTTCACTGGGCTCCACAACGGGAATATCTGTG
GCCTTCGCGTCCCCTCCTTGGTAAAACTCCCTTAAAACGGAATAGAGATT
AACGGAAACACATCGCTGTTGCTGCTCCAGGGGTAGTTTCAGAGCTGAGA
GCGCCTGCTTCTGGGGCACATTGCCCGGGTGCATGTGCACCAGGGTGCCC
TCCGTGCCTGCGCCTATAGAGTTGAGCATGGCAGCCGGCAGTAGACCATT
GGTACCACTCTCGTACAGCAGATAGCTGCCGAATCCACAAACGCCCGAGT
AAGAAATAATTTGCGATAAAGTGTCAACGCGAATGCCCATGACCTTTTCC
GAGTCTTGGCGGTAGAAGATGTCCAGCATCAGACGGATCGTTGGCTGGCG
GATTTGAACGAACTCGAAATACTTTTTCTCTTTCTT
BS17802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-PB | 1335 | CG9596-RB | 466..1335 | 886..17 | 4325 | 99.8 | Minus |
| CG9596-PA | 1395 | CG9596-RA | 466..992 | 886..360 | 2610 | 99.8 | Minus |
| CG9596-PA | 1395 | CG9596-RA | 1050..1395 | 362..17 | 1730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 702..1571 | 886..17 | 4335 | 99.9 | Minus |
| CG9596-RC | 2175 | CG9596-RC | 559..1428 | 886..17 | 4335 | 99.9 | Minus |
| CG9596-RB | 1470 | CG9596-RB | 559..1428 | 886..17 | 4335 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560576..6561102 | 360..886 | 2620 | 99.8 | Plus |
| 2L | 23513712 | 2L | 6560173..6560518 | 17..362 | 1730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:30 has no hits.
BS17802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:34 Download gff for
BS17802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-PB | 466..1335 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:07 Download gff for
BS17802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 559..1433 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:47 Download gff for
BS17802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 559..1433 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:47 Download gff for
BS17802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560168..6560516 | 11..360 | 99 | <- | Plus |
| 2L | 6560577..6561102 | 361..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:07 Download gff for
BS17802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560168..6560516 | 11..360 | 99 | <- | Plus |
| arm_2L | 6560577..6561102 | 361..886 | 99 | | Plus |
BS17802.5prime Sequence
816 bp (700 high quality bases) assembled on 2007-05-30
> BS17802.5prime
GAAGTTATCAGTCGACATGGCCACCGAAGAGGACATCCCCAGAATCCAAT
TGGGCGACTACATCGTCATCCAGCGGCAGAAATATACGAAGCTACAAAAA
TTCGGCAGTCTGGACACCACGGCCACATTGGGCAAAGAAACACTGGAGCT
GAAGTCTCTTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGTCA
AAGAGACAAAGCCGGGTAAAAGGGGCGCCCAGAGACAACACACCTTGGAG
CTGTGCAGCGAGACTGAGCTGAGAAGCACGCGAGAGGTTCTGGGCATCTC
CAGCAGTGGAGCGGATAATCGGGACATCCGGGATGATGGAGAAGCGCAGA
CCCTGAAACCAGAGGACATTGCGCAGCTGCGTGAGGAGTGCAACGACTCC
AGCAAAATCATCGAGAAGCTGGTGGAGAATTCTAAGACTTTCCACAACCG
AACGGAGTACTCCCAAGAGAAGTACCTGCTAAAGAAGGAGAAAAAGTATT
TCGAGTTCGTTCAAATCCGCCAGCCAACGATCCGTCTGATGCTGGACATC
TTCTACCGCCAAGACTCGGAAAAGGTCATGGGCATTCGCGTTGACACTTT
ATCGCAAATTATTTCTTACTCGGGCGTTTGTGGATTCGGCAGCTATCTGC
TGTACGAGAGTGGTACCAATGGTCTACTGCCGGCTGCCATGCTCAACTCT
ATAGGCGCAGGCACGGAGGGCACCCTGGTGCACATGCACCCGGGCAATGT
GCCCCAGAAGCAGGCGCTCTCAGCTCTGAAACTACCCCTGGAGCAGCAAC
AGCGATGTGTTTCCGT
BS17802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-PA | 1395 | CG9596-RA | 1..800 | 17..816 | 4000 | 100 | Plus |
| CG9596-PB | 1335 | CG9596-RB | 1..800 | 17..816 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 236..1036 | 16..816 | 4005 | 100 | Plus |
| CG9596-RC | 2175 | CG9596-RC | 93..893 | 16..816 | 4005 | 100 | Plus |
| CG9596-RB | 1470 | CG9596-RB | 93..893 | 16..816 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560768..6561568 | 816..16 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:00:20 has no hits.
BS17802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:39 Download gff for
BS17802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-PB | 1..800 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:23 Download gff for
BS17802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 93..893 | 16..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:12 Download gff for
BS17802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 93..893 | 16..816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:12 Download gff for
BS17802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560768..6561568 | 16..816 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:23 Download gff for
BS17802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560768..6561568 | 16..816 | 100 | -> | Minus |
BS17802.pep Sequence
Translation from 16 to 1350
> BS17802.pep
MATEEDIPRIQLGDYIVIQRQKYTKLQKFGSLDTTATLGKETLELKSLLD
QPYGSTFKMCVKETKPGKRGAQRQHTLELCSETELRSTREVLGISSSGAD
NRDIRDDGEAQTLKPEDIAQLREECNDSSKIIEKLVENSKTFHNRTEYSQ
EKYLLKKEKKYFEFVQIRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIIS
YSGVCGFGSYLLYESGTNGLLPAAMLNSIGAGTEGTLVHMHPGNVPQKQA
LSALKLPLEQQQRCVSVNLYSVLREFYQGGDAKATDIPVVEPSENEPQET
QLETPTEEQPEAIEPTTKKPKLDESNSGREGAKGPPRWHLENKRATALMH
AEFDSLVVAAKEHPSNILQALLPLVKPSRPVVVFSTCKELLQETFMELKT
TGKVTGLHLTSNWLRTYQILPNRTHPEVNMSGNSGYLLTGYTLR*
BS17802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-PD | 444 | CG9596-PD | 1..444 | 1..444 | 2287 | 100 | Plus |
| CG9596-PC | 444 | CG9596-PC | 1..444 | 1..444 | 2287 | 100 | Plus |
| CG9596-PB | 444 | CG9596-PB | 1..444 | 1..444 | 2287 | 100 | Plus |
