Clone Sequence Records
BS17804.complete Sequence
2303 bp assembled on 2009-12-07
GenBank Submission: KX801709
> BS17804.complete
GAAGTTATCAGTCGACATGCATACCATTTTTCGAGGACCGCTGCTCTACC
GCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAGAAATTACATT
CATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAAGTACTTTGTC
CGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGCGTGGCAGAGG
ACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCTCGAAGATCCG
GACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACAGCATAAGCCG
GCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAACACGAAGCTTA
CCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCGTTATGGCAAC
TATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGAGCGTCATGTA
CCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTGTTCCTGGATC
CGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCAGAAGGCCTTC
TCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAAGTGGATCCGA
TTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAGGATCTGAGCG
AGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGACAAAAGACAAT
AAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAAAAACCGATGG
ATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTATCACCGGGTGG
GTGAGAGCCAGGATAAAGACACACTGGTGGTCGAATTTCCGGAAGAGCCT
TCGTGGCGCATCCAATCCACCGTCTCGGATTGTGGAAAATACCTGATTCT
GGCCATTGTTAAAGATTGCCGTGACAACATTGTGTTCTATGCTGATCTTA
CGCCAGGTGCGGAAATAACTTCCAAACTGAATGTCAAGAAAATTGTGGAA
AAATTCGAGGCGGACTACGATTACATTACCAATGAAGGCTCGAAGATATT
CTTCCGTACAAATAAGAATGCACCAAATTACCAAGTTATTGCCATAGACT
TCAATAATTCAGCGGAGGACAAATGGGAAACGCTTATAGCCGAGCACAAG
TCGGATGTTTTGGACTGGGTTAAGTGCGTTGATAATGATAAACTGCTCGT
TTGTTACATCAGGGATGTGAAGAGCGTTTTGCAAGTGAATTCCCTAAAGG
ATGGCACCCTACTGCGCGAATTCGACTTGGATATCGGCACCATTGTAGGC
ACATCGGGAGAGAAGAAATATTCTGAAATATTCTACAACTTCTCGTCCTT
TTTGAATCCCGGCTCCATTTATCGATATGATTTCAAGACACCTGACAAGT
CGCCATCAGTATTCCGCGAAATCAAACTGAATTTGGAAGGATTCCGTCGC
GAGGATTACGCCGTTGAGCAGATATTCTACAAGAGCAAGGATGGCACCAA
GGTTCCCATGTTCATAATTAGGAAAAAACGTGATAGTGTTGAGCCGCGAC
CATGTCTGCTTTACGGATACGGAGGCTTCAACATCAGCATGCTGCCTTCC
TTCGGACTCTCTGGGCTTATGTTCATCGACACATTCGATGGTGTGCTCGC
CTATCCGAATCTGCGAGGTGGTGGCGAATATGGCGAGAAGTGGCACAACG
GCGGTCGCCTGCTGAACAAGCAGAACGTGTTCGATGACTTCCAAGCAGCT
GCCGAGTACTTGATCGAGAATAAGTACACGACCAAGGATCGTTTGGCCAT
CCAAGGTGGCTCCAACGGAGGCCTTTTGGTCGGCTCGTGTATCAACCAAC
GTCCGGATTTGTTTGGAGCTGCTGTGGCTCAAGTTGGTGTCATGGATATG
TTGCGCTTCCACAAGTTCACCATTGGCCACGCTTGGTGCTCGGATTATGG
AAACCCATCGGAGAAGGAGCACTTTGACAACCTGTACAAGTTCTCGCCGC
TGCATAATGTGCACACTCCGAAGGGCGCCGAAACGGAATACCCATCGACT
TTGATCCTGACCGCCGACCACGACGATCGTGTCAGCCCTTTGCATTCGCT
CAAGTTCATTGCGGCCCTCCAGGAAGCTGTTCGCGACTCGGAATTCCAGA
AAAATCCCGTTCTGTTGCGCGTCTACCAGAAGGCGGGCCATGGCGCTGGC
AAGCCGACATCGAAGAGAATCGAGGAAGCCACCGATATACTGACTTTCTT
GTCCAAAAGCCTTAACGTCGACATAGTTAACGTTTGAAAGCTTTCTAGAC
CAT
BS17804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-RA | 2271 | CG5355-PA | 1..2271 | 17..2287 | 11355 | 100 | Plus |
| CG2528-RE | 2196 | CG2528-PE | 1528..2053 | 1619..2144 | 575 | 74 | Plus |
| CG2528-RE | 2196 | CG2528-PE | 900..1092 | 991..1183 | 260 | 75.6 | Plus |
| CG2528-RE | 2196 | CG2528-PE | 151..356 | 236..441 | 205 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-RA | 2404 | CG5355-RA | 34..2304 | 17..2287 | 11355 | 100 | Plus |
| CG2528-RE | 2342 | CG2528-RE | 1582..2107 | 1619..2144 | 575 | 74 | Plus |
| CG2528-RE | 2342 | CG2528-RE | 954..1146 | 991..1183 | 260 | 75.6 | Plus |
| CG2528-RE | 2342 | CG2528-RE | 205..410 | 236..441 | 205 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10412624..10413219 | 718..123 | 2980 | 100 | Minus |
| 2L | 23513712 | 2L | 10410637..10411037 | 2287..1887 | 2005 | 100 | Minus |
| 2L | 23513712 | 2L | 10411430..10411824 | 1615..1221 | 1975 | 100 | Minus |
| 2L | 23513712 | 2L | 10411091..10411364 | 1887..1614 | 1370 | 100 | Minus |
| 2L | 23513712 | 2L | 10412205..10412364 | 1021..862 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 10412425..10412567 | 861..719 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 10412022..10412142 | 1142..1022 | 605 | 100 | Minus |
| 2L | 23513712 | 2L | 21990839..21991352 | 2132..1619 | 560 | 73.9 | Minus |
| 2L | 23513712 | 2L | 10413325..10413430 | 122..17 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 10411881..10411961 | 1222..1142 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 21991788..21991980 | 1183..991 | 260 | 75.6 | Minus |
| 2L | 23513712 | 2L | 21992524..21992729 | 441..236 | 205 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:06:17 has no hits.
BS17804.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:38 Download gff for
BS17804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 143..2412 | 17..2286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:59 Download gff for
BS17804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 34..2303 | 17..2286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:21 Download gff for
BS17804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 143..2412 | 17..2286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:04 Download gff for
BS17804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 34..2303 | 17..2286 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:04 Download gff for
BS17804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10411091..10411363 | 1615..1887 | 100 | <- | Minus |
| 2L | 10410638..10411036 | 1888..2286 | 100 | <- | Minus |
| 2L | 10411431..10411822 | 1223..1614 | 100 | <- | Minus |
| 2L | 10411881..10411961 | 1142..1222 | 100 | <- | Minus |
| 2L | 10412023..10412142 | 1022..1141 | 100 | <- | Minus |
| 2L | 10412205..10412364 | 862..1021 | 100 | <- | Minus |
| 2L | 10412425..10412567 | 719..861 | 100 | <- | Minus |
| 2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
| 2L | 10413325..10413430 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:59 Download gff for
BS17804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10410638..10411036 | 1888..2286 | 100 | <- | Minus |
| arm_2L | 10411091..10411363 | 1615..1887 | 100 | <- | Minus |
| arm_2L | 10411431..10411822 | 1223..1614 | 100 | <- | Minus |
| arm_2L | 10411881..10411961 | 1142..1222 | 100 | <- | Minus |
| arm_2L | 10412023..10412142 | 1022..1141 | 100 | <- | Minus |
| arm_2L | 10412205..10412364 | 862..1021 | 100 | <- | Minus |
| arm_2L | 10412425..10412567 | 719..861 | 100 | <- | Minus |
| arm_2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
| arm_2L | 10413325..10413430 | 17..122 | 100 | | Minus |
BS17804.3prime Sequence
869 bp (789 high quality bases) assembled on 2007-05-30
> BS17804.3prime
ATGGTCTAGAAAGCTTTCAAACTTTAACTATGTCGACGTTAAGGCTTTTG
GACAAGAAAGTCAGTATATCGGTGGCTTCCTCGATTCTCTTCGATGTCGG
CTTGCCAGCGCCATGGCCCGCCTTCTGGTAGACGCGCAACAGAACGGGAT
TTTTCTGGAATTCCGAGTCGCGAACAGCTTCCTGGAGGGCCGCAATGAAC
TTGAGCGAATGCAAAGGGCTGACACGATCGTCGTGGTCGGCGGTCAGGAT
CAAAGTCGATGGGTATTCCGTTTCGGCGCCCTTCGGAGTGTGCACATTAT
GCAGCGGCGAGAACTTGTACAGGTTGTCAAAGTGCTCCTTCTCCGATGGG
TTTCCATAATCCGAGCACCAAGCGTGGCCAATGGTGAACTTGTGGAAGCG
CAACATATCCATGACACCAACTTGAGCCACAGCAGCTCCAAACAAATCCG
GACGTTGGTTGATACACGAGCCGACCAAAAGGCCTCCGTTGGAGCCACCT
TGGATGGCCAAACGATCCTTGGTCGTGTACTTATTCTCGATCAAGTACTC
GGCAGCTGCTTGGAAGTCATCGAACACGTTCTGCTTGTTCAGCAGGCGAC
CGCCGTTGTGCCACTTCTCGCCATATTCGCCACCACCTCGCAGATTCGGA
TAGGCGAGCACACCATCGAATGTGTCGATGAACATAAGCCCAGAGAGTCC
GAAGGAAGGCAGCATGCTGATGTTGAAGCCTCCGTATCCGTAAAGCAGAC
ATGGTCGCGGCTCAACACTATCACGTTTTTTCCTAATTATGAACATGGGA
ACCTTGGTGCCATCCTTGCTCTTGTAGAATATCTGCTCAACGGCGTAATC
CTCGCGACGGAATCCTTCA
BS17804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-PA | 2271 | CG5355-RA | 1420..2271 | 868..17 | 4235 | 99.8 | Minus |
| CG2528-PA | 2049 | CG2528-RA | 1783..1826 | 430..387 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-RA | 2404 | CG5355-RA | 1453..2304 | 868..17 | 4245 | 99.9 | Minus |
| CG2528-RE | 2342 | CG2528-RE | 1525..2107 | 742..160 | 605 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10410637..10411037 | 17..417 | 1990 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10411091..10411364 | 417..690 | 1370 | 100 | Plus |
| 2L | 23513712 | 2L | 10411430..10411609 | 689..868 | 900 | 100 | Plus |
| 2L | 23513712 | 2L | 21990839..21991352 | 172..685 | 560 | 73.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:47:34 has no hits.
BS17804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:50 Download gff for
BS17804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-PA | 1420..2271 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:49 Download gff for
BS17804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 1453..2310 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:42 Download gff for
BS17804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 1453..2310 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:42 Download gff for
BS17804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10410631..10411036 | 11..416 | 99 | <- | Plus |
| 2L | 10411091..10411363 | 417..689 | 100 | <- | Plus |
| 2L | 10411431..10411609 | 690..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:49 Download gff for
BS17804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10411431..10411609 | 690..868 | 100 | | Plus |
| arm_2L | 10411091..10411363 | 417..689 | 100 | <- | Plus |
| arm_2L | 10410631..10411036 | 11..416 | 99 | <- | Plus |
BS17804.5prime Sequence
843 bp (827 high quality bases) assembled on 2007-05-30
> BS17804.5prime
GAAGTTATCACTTTACATGCATACCATTTTTCGAGGACCGCTGCTCTACC
GCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAGAAATTACATT
CATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAAGTACTTTGTC
CGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGCGTGGCAGAGG
ACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCTCGAAGATCCG
GACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACAGCATAAGCCG
GCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAACACGAAGCTTA
CCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCGTTATGGCAAC
TATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGAGCGTCATGTA
CCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTGTTCCTGGATC
CGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCAGAAGGCCTTC
TCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAAGTGGATCCGA
TTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAGGATCTGAGCG
AGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGACAAAAGACAAT
AAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAAAAACCGATGG
ATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTATCACCGGGTGG
GTGAGAGCCAGGATAAAGACACACTGGTGGTCGAATTTCCGGA
BS17804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-PA | 2271 | CG5355-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-RA | 2404 | CG5355-RA | 34..860 | 17..843 | 4135 | 100 | Plus |
| CG2528-RE | 2342 | CG2528-RE | 205..410 | 236..441 | 205 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10412624..10413219 | 718..123 | 2980 | 100 | Minus |
| 2L | 23513712 | 2L | 10412443..10412567 | 843..719 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 10413325..10413430 | 122..17 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 21992524..21992729 | 441..236 | 205 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:49:45 has no hits.
BS17804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:35:54 Download gff for
BS17804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:08 Download gff for
BS17804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 34..859 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:59 Download gff for
BS17804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 34..859 | 17..842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:59 Download gff for
BS17804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10412444..10412567 | 719..842 | 100 | <- | Minus |
| 2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
| 2L | 10413325..10413430 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:08 Download gff for
BS17804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10412444..10412567 | 719..842 | 100 | <- | Minus |
| arm_2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
| arm_2L | 10413325..10413430 | 17..122 | 100 | | Minus |
BS17804.pep Sequence
Translation from 16 to 2286
> BS17804.pep
MHTIFRGPLLYRRICQIVVPKTLPRNYIHRELPSNLTRAMPSTLSAKLAY
PVARKDESVAEDFHGTQIKDVYRWLEDPDSTETEEFVNAQNSISRPFLEN
GEEWKKLNTKLTKLWNYPKYGCPMRYGNYYYYFMNTGLQNQSVMYQQKSL
GDESESKVFLDPNTLSEDGTIALTQKAFSEDGKYMAYGLSESGSDWIKIL
IRDAETGKDLSEVLEKVKFSEISWTKDNKGFFYGRYPDQDGKTDGSETKQ
NENQKLYYHRVGESQDKDTLVVEFPEEPSWRIQSTVSDCGKYLILAIVKD
CRDNIVFYADLTPGAEITSKLNVKKIVEKFEADYDYITNEGSKIFFRTNK
NAPNYQVIAIDFNNSAEDKWETLIAEHKSDVLDWVKCVDNDKLLVCYIRD
VKSVLQVNSLKDGTLLREFDLDIGTIVGTSGEKKYSEIFYNFSSFLNPGS
IYRYDFKTPDKSPSVFREIKLNLEGFRREDYAVEQIFYKSKDGTKVPMFI
IRKKRDSVEPRPCLLYGYGGFNISMLPSFGLSGLMFIDTFDGVLAYPNLR
GGGEYGEKWHNGGRLLNKQNVFDDFQAAAEYLIENKYTTKDRLAIQGGSN
GGLLVGSCINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSDYGNPSEK
EHFDNLYKFSPLHNVHTPKGAETEYPSTLILTADHDDRVSPLHSLKFIAA
LQEAVRDSEFQKNPVLLRVYQKAGHGAGKPTSKRIEEATDILTFLSKSLN
VDIVNV*
BS17804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-PA | 756 | CG5355-PA | 1..756 | 1..756 | 4005 | 100 | Plus |
| CG2528-PE | 731 | CG2528-PE | 11..731 | 33..756 | 2697 | 68.5 | Plus |
