Clone Sequence Records
BS17806.complete Sequence
2855 bp assembled on 2009-12-07
GenBank Submission: KX801152
> BS17806.complete
GAAGTTATCAGTCGACATGTTTGCCCCGCGAGTGGCTGTTCTCCTGGTGG
CCTGTGTGTCCTTGGCCTCGGCAGGAACTCGGCAACTGTCTGTGGATGTC
CAGCCGCCGGCGACGCTCGCCACCGAGCTAAATGAATACCGCCTGGCCGA
GCACATCACGCCGGTTAACTACAACATTACGCTGCGTCCCTATTTGCTGG
AGACCGATGGCAACAAGAGGTTCACCTTCGATGGCGAGGTTTGGATCGAG
GTGATTTCCAACCAGACCACCAACGACATCTATCTGCACTCGAAAAACCT
CACATATTCGGTCAGGGAATACTGGCAAAAGCCAACCACCGAAGTGGCCA
ATCCTACGGTCATCCAAATTAGTGCCACCAATACAACGAACTATGATACG
GATATTGTAAAGCTGACGGCGTCAACTGCTTTGACCGCCAATACGACATA
TATACTGCATTTCGTGTACACCGGTCTGATGGAGGACGATATGCACGGTT
TCTATCGCAGCTCCTATGTGGACGATAACAATGTTACCAAGTGGCTGGGA
TCCACCCAATTCCAAACCCATCACGCTCGTCGCGCCTTCCCCAGCTTTGA
TGAGCCCCAGTTCAAGGCCACCTTCGATGTCACGCTGAAGCGACACAGGA
CCTTCAACTCGGTCAGTAACACCCGTCTGATCTCATCGTATCCCAGCACT
GAAGAAGGTATTTTCTCGGACGTGTACAAGACGACGCCCAAAATGTCCAC
CTATCTGCTGGCTTTCATAATTTCCGAGTTCGTGGCCCGTAAGGATGACG
ATTTCGGAGTTTACGCACGTCCCGAGTACTATGCTCAGACCCAGTACCCC
TACAATGTGGGTATCCAGATTTTGGAGGAGATGGGCCAGTACCTGGATAA
GGACTACTACTCTATGGGCAACGACAAGATGGATATGGCCGCCATTCCGG
ATTTCTCGGCCGGAGCAATGGAGAACTGGGGTCTGTTGACCTACAGGGAG
CGTTCCCTGCTGGTGGACGAGTCGGCTACTACCTTGGCCTCCCGCCAGTC
CATTGCCGCCGTGGTGGCTCACGAACAGGCGCACATGTGGTTCGGCGATC
TGGTCACCTGCAAGTGGTGGAGCTACACCTGGCTTAACGAGGGATTCGCT
CGCTATTTCCAATACTTCGGCACCGCCATGGTCGAGGACAAATGGGAGCT
GGAGAAGCAGTTTGTGGTTGACCAGGTGCAGTCGGTCATGGCCATGGACT
CGACCAATGCCACCAATCCGCTGAGCGATGAGAACACCTACACGCCCGCC
CATCTGAGCCGCATGTTTAACAGCATCTCCTACAACAAGGGAGCCACCTT
CATCCGTATGATCAAGCACACCATGGGCGAGCAACAATTCCAGAAGTCCC
TGCAGGAATACCTGAAGAAATACGAGTATCAGTCGTCTTTGCCTGAATAT
CTCTTGGGAGCCTGGCAAGCCAATTGGCCCAACTCCAGTTACAATGAAAG
CTCCAAAGATATATTCAAGAGCTTCACCGAGCAGGTGGGCTATCCACTGA
TCAATGTAACTGTTGGCAACAGTCAGGTCAGCTTCACGCAGAAGCGTTTC
CTGCTGAAGGAGAGCGATGGATCCGACTCATCTTTGAAATATACTGTGCC
CATTTCCTACACTACCAGTGAGACAAATAACTTTTTGAACACCACGCCAA
AGTTTATTCTGAAACCCAACGTAACTACGACGGTTCAATTCAACTCAACA
ATAAAATGGATTGTGGTCAATATTCAGCAGACCGGATATTACCGTGTCAC
CTACTCCGACGACAATTGGCATGCCATCCACCACGCTCTGATCACAGCCA
ACTGGGGAGGAATTCACGAGAACAATCGCGCCCAGATCGTGGATGATCTG
TTCAATCTGGCCAGGGCTGGATATGTTACCTACAACCTTACCTTGGATGT
GATCGAGTATTTGCAGACGGAGACCAACTACATCCCCTGGACATCCGCCT
TCAACGGCTTCAACTACTTGACTATCCGCCTCGGAAACGACACGGCCGAT
TTCAATTACTATATCCAGACCCTGACCAACAAGGCCTACAATCAGCTGGG
CTTCAATGAAGCATCGAATGATACAGCCTTGGACATTTACCTACGCACTA
AGATCCTCTCCTGGGCCTGTCGCTATGGCAGCTCCGATTGCATCAGCCAG
GCCCAGGGCTACTTCCAATCGTTGGCCACCGTGCCCAAGAACATACGCGC
CACTGTCTACTGCGTGGGTCTGCGTGAAGGTGGTGAGGCCGAGTTCCAGG
CTCTTTACAACAAGTTCAAGAACGAGACCGTGGCCACCGAGGAGACCCTG
CTGCAGAACTCATTCGGTTGCGTCAAGACCCAGTCTCTAATCGAGAAGGT
GTTCGATCTGATCATCAGCGATGAGATTCGACGACAGGACAAGTCATCCG
TGCTGGCCACTCTCTACACGGAGAACAACGAGAATGTCAGTCCGGTGTTT
GCACTGGTCACTCAGAAATACGAGGAATTGGCTGAGGCCATGGGCGGCTA
CTCCGCTGTGGCCACGGTGATTTCCAATATCGCCGCCCGTTTCACCACAA
ATCAGCAGTTAACTGATCTGGAGAACTTCAACAAGGCTAATGGCGCCAAG
TTCGGCAGCTCGCAGGCCACTTTGACCGCCGCCGAGGCAACCGTTAAGGA
GAACTTGGAGTGGGCTACGGCCAAGCTGGGCGTTTTCCGCAGCTATCTGG
CCAACTATCGTAGTGGAAGCGCCATGGTCAACGCCTTCAGCGCCATCAGC
CTTTTGATGGTGGCCCTGGTCACCATGCTGCGTAACTAAAAGCTTTCTAG
ACCAT
BS17806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 2823 | CG31198-PA | 1..2823 | 17..2839 | 14115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 3019 | CG31198-RA | 91..2913 | 17..2839 | 14115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21756178..21757293 | 1423..2538 | 5580 | 100 | Plus |
| 3R | 32079331 | 3R | 21755402..21756118 | 706..1422 | 3585 | 100 | Plus |
| 3R | 32079331 | 3R | 21754569..21755257 | 17..705 | 3445 | 100 | Plus |
| 3R | 32079331 | 3R | 21757352..21757652 | 2539..2839 | 1505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:28 has no hits.
BS17806.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:54 Download gff for
BS17806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 97..2911 | 23..2837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:42 Download gff for
BS17806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 97..2911 | 23..2837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:04 Download gff for
BS17806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 97..2911 | 23..2837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:13 Download gff for
BS17806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 97..2911 | 23..2837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:13 Download gff for
BS17806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21754575..21755257 | 23..705 | 100 | -> | Plus |
| 3R | 21755402..21756118 | 706..1422 | 100 | -> | Plus |
| 3R | 21756178..21757293 | 1423..2538 | 100 | -> | Plus |
| 3R | 21757352..21757650 | 2539..2837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:42 Download gff for
BS17806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17583074..17583372 | 2539..2837 | 100 | | Plus |
| arm_3R | 17580297..17580979 | 23..705 | 100 | -> | Plus |
| arm_3R | 17581124..17581840 | 706..1422 | 100 | -> | Plus |
| arm_3R | 17581900..17583015 | 1423..2538 | 100 | -> | Plus |
BS17806.3prime Sequence
892 bp (794 high quality bases) assembled on 2007-05-30
> BS17806.3prime
ATGGTCTAGAAAGCTTTTAGCCCCTCAGCATGGTGACCAGGGCCACCATC
AAAAGGCTGATGGCGCTGAAGGCGTTGACCATGGCGCTTCCACTACGATA
GTTGGCCAGATAGCTGCGGAAAACGCCCAGCTTGGCCGTAGCCCACTCCA
AGTTCTCCTTAACGGTTGCCTCGGCGGCGGTCAAAGTGGCCTGCGAGCTG
CCGAACTTGGCGCCATTAGCCTTGTTGAAGTTCTCCAGATCAGTTAACTG
CTGATTTGTGGTGAAACGGGCGGCGATATTGGAAATCACCGTGGCCACAG
CGGAGTAGCCGCCCATGGCCTCAGCCAATTCCTCGTATTTCTGAGTGACC
AGTGCAAACACCGGACTGACATTCTCGTTGTTCTCCGTGTAGAGAGTGGC
CAGCACGGATGACTTGTCCTGTCGTCGAATCTCATCGCTGATGATCAGAT
CGAACACCTTCTCGATTAGAGACTGGGTCTTGACGCAACCGAATGAGTTC
TGCAGCAGGGTCTCCTCGGTGGCCACGGTCTCGTTCTTGAACTTGTTGTA
AAGAGCCTGGAACTCGGCCTCACCACCTTCACGCAGACCCACGCAGTAGA
CAGTGGCGCGTATGTTCTTGGGCACGGTGGCCAACGATTGGAAGTAGCCC
TGGGCCTGGCTGATGCAATCGGAGCTGCCATAGCGACAGGCCCAGGAGAG
GATCTTAGTGCGTAGGTAAATGTCCAAGGCTGTATCATTCGATGCTTCAT
TGAAGCCCAGCTGATTGTAGGCCTTGTTGGTCAGGGTCTGGATATAGTAA
TTGAAATCGGCCGTGTCGTTTCCGAGGCGGATAGTCAAGTAGTTGAAGCC
GTTGAAGGCCGATGTCCAGGGGATGTAGTTGGTCTCCGTCTG
BS17806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-PA | 2823 | CG31198-RA | 1948..2814 | 892..26 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 3019 | CG31198-RA | 2038..2904 | 892..26 | 4320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21756719..21757293 | 892..318 | 2860 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21757352..21757643 | 317..26 | 1460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:49:56 has no hits.
BS17806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:07 Download gff for
BS17806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-PA | 1948..2823 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:11 Download gff for
BS17806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 2038..2913 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:29 Download gff for
BS17806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 2038..2913 | 17..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:29 Download gff for
BS17806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21756719..21757293 | 318..892 | 99 | -> | Minus |
| 3R | 21757352..21757652 | 17..317 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:11 Download gff for
BS17806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17582441..17583015 | 318..892 | 99 | -> | Minus |
| arm_3R | 17583074..17583374 | 17..317 | 98 | | Minus |
BS17806.5prime Sequence
850 bp (703 high quality bases) assembled on 2007-05-30
> BS17806.5prime
GAAGTTATCACTCTACATGTTTGCCCCGCGAGTGGCTGTTCTCCTGGTGG
CCTGTGTGTCCTTGGCCTCGGCAGGAACTCGGCAACTGTCTGTGGATGTC
CAGCCGCCGGCGACGCTCGCCACCGAGCTAAATGAATACCGCCTGGCCGA
GCACATCACGCCGGTTAACTACAACATTACGCTGCGTCCCTATTTGCTGG
AGACCGATGGCAACAAGAGGTTCACCTTCGATGGCGAGGTTTGGATCGAG
GTGATTTCCAACCAGACCACCAACGACATCTATCTGCACTCGAAAAACCT
CACATATTCGGTCAGGGAATACTGGCAAAAGCCAACCACCGAAGTGGCCA
ATCCTACGGTCATCCAAATTAGTGCCACCAATACAACGAACTATGATACG
GATATTGTAAAGCTGACGGCGTCAACTGCTTTGACCGCCAATACGACATA
TATACTGCATTTCGTGTACACCGGTCTGATGGAGGACGATATGCACGGTT
TCTATCGCAGCTCCTATGTGGACGATAACAATGTTACCAAGTGGCTGGGA
TCCACCCAATTCCAAACCCATCACGCTCGTCGCGCCTTCCCCAGCTTTGA
TGAGCCCCAGTTCAAGGCCACCTTCGATGTCACGCTGAAGCGACACAGGA
CCTTCAACTCGGTCAGTAACACCCGTCTGATCTCATCGTATCCCAGCACT
GAAGAAGGTATTTTCTCGGACGTGTACAAGACGACGCCCAAAATGTCCAC
CTATCTGCTGGCTTTCATAATTTCCGAGTTCGTGGCCCGTAAGGATGACG
ATTTCNGAGTTTACGCACGTCCCGAGTACTATGCTCAGACCCAGTACCCC
BS17806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-PA | 2823 | CG31198-RA | 1..834 | 17..850 | 4151 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 3019 | CG31198-RA | 91..924 | 17..850 | 4159 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21754569..21755257 | 17..705 | 3445 | 100 | Plus |
| 3R | 32079331 | 3R | 21755402..21755546 | 706..850 | 714 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:47:53 has no hits.
BS17806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:12 Download gff for
BS17806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:50 Download gff for
BS17806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 91..924 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:45 Download gff for
BS17806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 91..924 | 17..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:45 Download gff for
BS17806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21754569..21755257 | 17..705 | 100 | -> | Plus |
| 3R | 21755402..21755546 | 706..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:50 Download gff for
BS17806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17580291..17580979 | 17..705 | 100 | -> | Plus |
| arm_3R | 17581124..17581268 | 706..850 | 99 | | Plus |
BS17806.pep Sequence
Translation from 16 to 2838
> BS17806.pep
MFAPRVAVLLVACVSLASAGTRQLSVDVQPPATLATELNEYRLAEHITPV
NYNITLRPYLLETDGNKRFTFDGEVWIEVISNQTTNDIYLHSKNLTYSVR
EYWQKPTTEVANPTVIQISATNTTNYDTDIVKLTASTALTANTTYILHFV
YTGLMEDDMHGFYRSSYVDDNNVTKWLGSTQFQTHHARRAFPSFDEPQFK
ATFDVTLKRHRTFNSVSNTRLISSYPSTEEGIFSDVYKTTPKMSTYLLAF
IISEFVARKDDDFGVYARPEYYAQTQYPYNVGIQILEEMGQYLDKDYYSM
GNDKMDMAAIPDFSAGAMENWGLLTYRERSLLVDESATTLASRQSIAAVV
AHEQAHMWFGDLVTCKWWSYTWLNEGFARYFQYFGTAMVEDKWELEKQFV
VDQVQSVMAMDSTNATNPLSDENTYTPAHLSRMFNSISYNKGATFIRMIK
HTMGEQQFQKSLQEYLKKYEYQSSLPEYLLGAWQANWPNSSYNESSKDIF
KSFTEQVGYPLINVTVGNSQVSFTQKRFLLKESDGSDSSLKYTVPISYTT
SETNNFLNTTPKFILKPNVTTTVQFNSTIKWIVVNIQQTGYYRVTYSDDN
WHAIHHALITANWGGIHENNRAQIVDDLFNLARAGYVTYNLTLDVIEYLQ
TETNYIPWTSAFNGFNYLTIRLGNDTADFNYYIQTLTNKAYNQLGFNEAS
NDTALDIYLRTKILSWACRYGSSDCISQAQGYFQSLATVPKNIRATVYCV
GLREGGEAEFQALYNKFKNETVATEETLLQNSFGCVKTQSLIEKVFDLII
SDEIRRQDKSSVLATLYTENNENVSPVFALVTQKYEELAEAMGGYSAVAT
VISNIAARFTTNQQLTDLENFNKANGAKFGSSQATLTAAEATVKENLEWA
TAKLGVFRSYLANYRSGSAMVNAFSAISLLMVALVTMLRN*
BS17806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-PA | 940 | CG31198-PA | 1..940 | 1..940 | 4898 | 100 | Plus |
| CG42335-PE | 924 | CG42335-PE | 20..921 | 36..938 | 1380 | 34.8 | Plus |
| CG14516-PC | 990 | CG14516-PC | 102..949 | 40..873 | 1201 | 34.1 | Plus |
| CG14516-PA | 990 | CG14516-PA | 102..949 | 40..873 | 1201 | 34.1 | Plus |
| CG14516-PB | 999 | CG14516-PB | 111..958 | 40..873 | 1201 | 34.1 | Plus |
