Clone Sequence Records
BS17807.complete Sequence
2009 bp assembled on 2009-12-07
GenBank Submission: KX800198
> BS17807.complete
GAAGTTATCAGTCGACATGGCCGGTAGACGCCACCTGCTGCTGATCCTGC
TGCTGATCATGCAGTTGATCGCCACCACGCCGGCGTCGCGCAGCCTCAGC
GTTAATGGCAACAACATTTGGCGGCGGGTGCGCCTGGTGACCAGCCAGGA
ATCGGATCGCAACGCCTACCAGGTGCTTAAGCCGAGTAGCCGTAATGCCA
CCAGCACCACCACTACTACCAGCACGACTACAAGTACTACAAGTAGCACC
ACTAGTACCACTACTCCGGCAGCTCCTCAGACCCAGCGATCTGCCAAACA
ATTGGATCTCAATTTTCCGGGTGGCAATGTCTCCAGTGCTGCCCGTCTCG
AAATGTCGACGGAATTCTTTGTGGTACCCACACTATCGGCCAGCAGTTCT
AGCAGCACCACGTCCACCACCACACCAGCCACGCCCCGTCGGAGTTCAGG
GGCGAAGGCGCGAGCAGCCGGCACCACTGGACGGGTGACTCCCGGGAGCA
GCTCCAACAGCACACCGCCCAGTATAGTGTCCACCCACTTGCCCTTCGCG
GGACTACGCAAGGAGCCGTGGGTGGTGCCGGTGCTAGTCCTGGCCACCCT
CACCATGCTCATGATGGCAGCGTTCGAGATCTTTGTGCTCTTCAAGGCCT
GGCGGACGTCCCCGTCGCGTAGGCACCTCTTTCTGGGCCAGATGCTGCTT
CTCGGTCTGTTCGCCTGCGCTAGTTTGGGGGCCATCATCACCGCACAGCC
CTCGTTGATCAGTTGCGGGGCCATCCGCTTCGGAGTGGGCGTGGCCTACG
CCCTGGTCTTTGCCGCCCTGCTGGTCAAATGCGTATTTCTGATTAGTCTA
AATGGAGGGGTGTATCTGCCGGCTCCATACCAGGGATTGCTGCTCCTCTT
TGCGCTGCTCATCCAGGTAGCGATCGGAGGGCAGTGGCTGCTCACCCAAC
CACCGGAGGTATACACCACCAGTGTGCCTGTGATGGGCAGTGGCTTCCTT
AGCACCACGGTGGCCTCACAGACCAACTACTCGGCACTGTTTTACCCCAC
GTCCTACACAACGCTGGACGGGACTCCGGAGATCTACACCCGGATAGCGG
CGGTTAGCACCGTACTAATACCGCTCTGCAAGACGCAGTTCTCGGAGCTG
CTCTTCTCGCTGATCTACATTGTCTTTCTGATCGTCTTCATCGCCGTGCT
AGCCATCAAGTCGCGCGGCATCAGGGACAACTACCGTGAGGCCACCTACA
TTGGGCTGGCCATCGGAGGAGCCATCCCCATCTGGCTGGGATGGATGCTA
TGCGGCCTGGCCGTGGCCGAGCGGCACAAGGACGCTTGCGTGGCCTTCGG
TCTGGTAGCCACATCCGCCACGGTCTTCTTGGTGATGTTCATGCCCAAGG
GCAGGCAACTGGCGGCCATGGGCAAGGAGGGCCTGTACGTGGAGGACCGC
GAGGAGCAGTTCAGTTCCCTGAGTCGCGCCGGTTCCGGCTACTCGCCCTC
GTTCTTCCACTTCAAGCCCATCAAGTACGGCGTGATGAGCGGCTGCGGAC
TGCCCAACTCTGCATCCAACACGGGCCAGGGACTCAGCTCCAAACACTGC
TCCAGTGCCAACAATGGAGGTGATCGGGTTGCTCTGGTCACTGCCGCACC
GCCGAGCTATACGCGTATGTATCACTATTTTCCAGCACACCTGAGTCCGC
ACCCGTTCTGCTATTATCCTCCCGCACCACCACCACCACTGCCACCGCAA
CCACCGCCACCACAGCAAGCCGCACCGCCCACGCTCACGCCGTTGACCCT
CAAGCAGTTGGGCAACTCGCTAAGCTCCATGACACAAGCGGCGCAGTTGG
CCAAAACGCTGCGCTATGCGCCAGGCATGTTTATACGACCAGACGAAACG
AATCTTTACACCACGCTGGAGCCCACGTTGAGCAGCAATCCGAATGTGTA
CTTCCAGCGCAGCGGGGCCGTCCATCCCGGCATCCTGTACTGAAAGCTTT
CTAGACCAT
BS17807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RB | 1977 | CG32447-PB | 1..1977 | 17..1993 | 9885 | 100 | Plus |
| CG32447-RD | 1725 | CG32447-PD | 1..1606 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RC | 1914 | CG32447-PC | 1..1606 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RD | 1725 | CG32447-PD | 1606..1725 | 1874..1993 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RB | 2989 | CG32447-RB | 213..2189 | 17..1993 | 9885 | 100 | Plus |
| CG32447-RD | 4928 | CG32447-RD | 213..1818 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RC | 3800 | CG32447-RC | 213..1818 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RD | 4928 | CG32447-RD | 1818..1937 | 1874..1993 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21704548..21706153 | 1622..17 | 8030 | 100 | Minus |
| 3L | 28110227 | 3L | 21694315..21694568 | 1875..1622 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 21693603..21693724 | 1993..1872 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:15:53 has no hits.
BS17807.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:36 Download gff for
BS17807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 195..2170 | 17..1992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:04 Download gff for
BS17807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 213..2188 | 17..1992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:06 Download gff for
BS17807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 195..2170 | 17..1992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:41 Download gff for
BS17807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 213..2188 | 17..1992 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:41 Download gff for
BS17807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21693604..21693721 | 1875..1992 | 100 | <- | Minus |
| 3L | 21694316..21694567 | 1623..1874 | 100 | <- | Minus |
| 3L | 21704548..21706153 | 17..1622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:04 Download gff for
BS17807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21686704..21686821 | 1875..1992 | 100 | <- | Minus |
| arm_3L | 21687416..21687667 | 1623..1874 | 100 | <- | Minus |
| arm_3L | 21697648..21699253 | 17..1622 | 100 | | Minus |
BS17807.3prime Sequence
820 bp (818 high quality bases) assembled on 2007-05-30
> BS17807.3prime
ATGGTCTAGAAAGCTTTCAGTCCTTGATGCCGGGATGGACGGCCCCGCTG
CGCTGGAAGTACACATTCGGATTGCTGCTCAACGTGGGCTCCAGCGTGGT
GTAAAGATTCGTTTCGTCTGGTCGTATAAACATGCCTGGCGCATAGCGCA
GCGTTTTGGCCAACTGCGCCGCTTGTGTCATGGAGCTTAGCGAGTTGCCC
AACTGCTTGAGGGTCAACGGCGTGAGCGTGGGCGGTGCGGCTTGCTGTGG
TGGCGGTGGTTGCGGTGGCAGTGGTGGTGGTGGTGCGGGAGGATAATAGC
AGAACGGGTGCGGACTCAGGTGTGCTGGAAAATAGTGATACATACGCGTA
TAGCTCGGCGGTGCGGCAGTGACCAGAGCAACCCGATCACCTCCATTGTT
GGCACTGGAGCAGTGTTTGGAGCTGAGTCCCTGGCCCGTGTTGGATGCAG
AGTTGGGCAGTCCGCAGCCGCTCATCACGCCGTACTTGATGGGCTTGAAG
TGGAAGAACGAGGGCGAGTAGCCGGAACCGGCGCGACTCAGGGAACTGAA
CTGCTCCTCGCGGTCCTCCACGTACAGGCCCTCCTTGCCCATGGCCGCCA
GTTGCCTGCCCTTGGGCATGAACATCACCAAGAAGACCGTGGCGGATGTG
GCTACCAGACCGAAGGCCACGCAAGCGTCCTTGTGCCGCTCGGCCACGGC
CAGGCCGCATAGCATCCATCCCAGCCAGATGGGGATGGCTCCTCCGATGG
CCAGCCCAATGTAGGTGGCCTCACGGTAGTTGTCCCTGATGCCGCGCGAC
TTGATGGCTAGCACGGCGAT
BS17807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-PB | 1977 | CG32447-RB | 1174..1968 | 820..26 | 3975 | 100 | Minus |
| CG32447-PA | 2121 | CG32447-RA | 1174..1607 | 820..387 | 2170 | 100 | Minus |
| CG32447-PA | 2121 | CG32447-RA | 1751..2112 | 387..26 | 1810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RB | 2989 | CG32447-RB | 1386..2180 | 820..26 | 3975 | 100 | Minus |
| CG32447-RD | 4928 | CG32447-RD | 1386..1818 | 820..388 | 2165 | 100 | Minus |
| CG32447-RC | 3800 | CG32447-RC | 1386..1818 | 820..388 | 2165 | 100 | Minus |
| CG32447-RD | 4928 | CG32447-RD | 1818..1928 | 136..26 | 555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21704548..21704980 | 388..820 | 2165 | 100 | Plus |
| 3L | 28110227 | 3L | 21694315..21694568 | 135..388 | 1270 | 100 | Plus |
| 3L | 28110227 | 3L | 21693612..21693724 | 26..138 | 565 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1177..1239 | 79..139 | 112 | 66.7 | Plus |
BS17807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:17 Download gff for
BS17807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-PB | 1174..1977 | 17..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:21:53 Download gff for
BS17807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 1386..2189 | 17..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:48 Download gff for
BS17807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 1386..2189 | 17..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:48 Download gff for
BS17807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21693603..21693721 | 17..135 | 97 | <- | Plus |
| 3L | 21694316..21694567 | 136..387 | 100 | <- | Plus |
| 3L | 21704548..21704980 | 388..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:21:53 Download gff for
BS17807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21687416..21687667 | 136..387 | 100 | <- | Plus |
| arm_3L | 21686703..21686821 | 17..135 | 97 | <- | Plus |
| arm_3L | 21697648..21698080 | 388..820 | 100 | | Plus |
BS17807.5prime Sequence
891 bp (759 high quality bases) assembled on 2007-05-30
> BS17807.5prime
GAAGTTATCACTCTACATGGCCGGTAGACGCCACCTGCTGCTGATCCTGC
TGCTGATCATGCAGTTGATCGCCACCACGCCGGCGTCGCGCAGCCTCAGC
GTTAATGGCAACAACATTTGGCGGCGGGTGCGCCTGGTGACCAGCCAGGA
ATCGGATCGCAACGCCTACCAGGTGCTTAAGCCGAGTAGCCGTAATGCCA
CCAGCACCACCACTACTACCAGCACGACTACAAGTACTACAAGTAGCACC
ACTAGTACCACTACTCCGGCAGCTCCTCAGACCCAGCGATCTGCCAAACA
ATTGGATCTCAATTTTCCGGGTGGCAATGTCTCCAGTGCTGCCCGTCTCG
AAATGTCGACGGAATTCTTTGTGGTACCCACACTATCGGCCAGCAGTTCT
AGCAGCACCACGTCCACCACCACACCAGCCACGCCCCGTCGGAGTTCAGG
GGCGAAGGCGCGAGCAGCCGGCACCACTGGACGGGTGACTCCCGGGAGCA
GCTCCAACAGCACACCGCCCAGTATAGTGTCCACCCACTTGCCCTTCGCG
GGACTACGCAAGGAGCCGTGGGTGGTGCCGGTGCTAGTCCTGGCCACCCT
CACCATGCTCATGATGGCAGCGTTCGAGATCTTTGTGCTCTTCAAGGCCT
GGCGGACGTCCCCGTCGCGTAGGCACCTCTTTCTGGGCCAGATGCTGCTT
CTCGGTCTGTTCGCCTGCGCTAGTTTGGGGGCCATCATCACCGCACAGCC
CTCGTTGATCAGTTGCGGGGCCATCCGCTTCGGAGTGGGCGTGGCCTACG
CCCTGTTCTTTGCCGCCCTGCTGGTCAAATGCGTATTTCTGATTAGTCTA
AATGGAGGGGTGTATCTGCCGGCTCCATACCAGGGATTGCT
BS17807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-PA | 2121 | CG32447-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
| CG32447-PB | 1977 | CG32447-RB | 1..875 | 17..891 | 4350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RD | 4928 | CG32447-RD | 213..1087 | 17..891 | 4360 | 99.9 | Plus |
| CG32447-RC | 3800 | CG32447-RC | 213..1087 | 17..891 | 4360 | 99.9 | Plus |
| CG32447-RB | 2989 | CG32447-RB | 213..1087 | 17..891 | 4360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21705279..21706153 | 891..17 | 4360 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:27:13 has no hits.
BS17807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:22 Download gff for
BS17807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-PB | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:10 Download gff for
BS17807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 200..1087 | 4..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:22 Download gff for
BS17807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 200..1087 | 4..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:22 Download gff for
BS17807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21705279..21706166 | 4..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:10 Download gff for
BS17807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21698379..21699266 | 4..891 | 99 | | Minus |
BS17807.pep Sequence
Translation from 16 to 1992
> BS17807.pep
MAGRRHLLLILLLIMQLIATTPASRSLSVNGNNIWRRVRLVTSQESDRNA
YQVLKPSSRNATSTTTTTSTTTSTTSSTTSTTTPAAPQTQRSAKQLDLNF
PGGNVSSAARLEMSTEFFVVPTLSASSSSSTTSTTTPATPRRSSGAKARA
AGTTGRVTPGSSSNSTPPSIVSTHLPFAGLRKEPWVVPVLVLATLTMLMM
AAFEIFVLFKAWRTSPSRRHLFLGQMLLLGLFACASLGAIITAQPSLISC
GAIRFGVGVAYALVFAALLVKCVFLISLNGGVYLPAPYQGLLLLFALLIQ
VAIGGQWLLTQPPEVYTTSVPVMGSGFLSTTVASQTNYSALFYPTSYTTL
DGTPEIYTRIAAVSTVLIPLCKTQFSELLFSLIYIVFLIVFIAVLAIKSR
GIRDNYREATYIGLAIGGAIPIWLGWMLCGLAVAERHKDACVAFGLVATS
ATVFLVMFMPKGRQLAAMGKEGLYVEDREEQFSSLSRAGSGYSPSFFHFK
PIKYGVMSGCGLPNSASNTGQGLSSKHCSSANNGGDRVALVTAAPPSYTR
MYHYFPAHLSPHPFCYYPPAPPPPLPPQPPPPQQAAPPTLTPLTLKQLGN
SLSSMTQAAQLAKTLRYAPGMFIRPDETNLYTTLEPTLSSNPNVYFQRSG
AVHPGILY*
BS17807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-PB | 658 | CG32447-PB | 1..658 | 1..658 | 3368 | 100 | Plus |
| CG32447-PC | 637 | CG32447-PC | 1..637 | 1..658 | 3221 | 96.8 | Plus |
| CG32447-PD | 574 | CG32447-PD | 1..562 | 1..567 | 2705 | 95.6 | Plus |
| CG32447-PD | 574 | CG32447-PD | 512..574 | 598..658 | 210 | 69.8 | Plus |
