Clone Sequence Records
BS17808.complete Sequence
1913 bp assembled on 2009-12-07
GenBank Submission: KX802112
> BS17808.complete
GAAGTTATCAGTCGACATGTCGTACCACAAGCCCGAAGCTAAGACCGTCC
AGGATCTGAAAGATCTGGCCCAGAAACTGCGAATTCACTCTATCAACGCC
ACCCAGGCCTCCAAATCGGGCCATCCCACATCATGTGCCTCGATCGCTGA
GATCATGTCCGTGCTGTTCTTCCAGCAGCTGCGCCTGAACCTGAAGCACC
CACGCGATCCCTCCAGCGATCGCTTCATCCTGTCCAAAGGACACGCTGCT
CCCATTCTGTATGCCGCCTGGGCTGAGGCTGGTCTCTTCCCCATCGCGGA
TCTGAACAACCTGCGCAAGATCGACAGCGATCTGGAGGGTCACCCGACGC
CTCGTCTGAACTTCATCGATGTGGGCACTGGATCCCTGGGACAGGGTGTC
GCCGTCGGCGCTGGCATGGCCTATGTGGGCAAGAACTTCGACAAGGCCGA
CTACCGCACCTACGTGGTGGTGGGTGATGGTGAGTCCGCCGAGGGTTCCA
TCTGGGAGTCGCTGCACTTTGCCGGCCACTATAAACTGGACAACCTTTGC
GTGATCTTTGATGTGAACCGCTTGGGCCAGTCGGAGGCCACCTCCCTGCA
GCATAAGCTGGATGTTTACCGTGATCGTCTGGAGGCCTTCGGCTTTAATG
CCGTCGTTGTCGATGGTCATGATGTCGAGGAATTGAGCAAGGCTTTCCAT
TGTGCTGCAATCACCAAGAACAAGCCCACCGCCATCATTGCAAAGACGTT
CAAGGGCAGGGACTTCCCCAACATCGAGGATTTGGACAACTGGCACGGCA
AGCCACTGGGCGACAAGGCCGCCGAAGTGGTGAAGCATCTGGAGGGACTG
ATTGTCAACAAGAACGTCAAGCTGACCCCTAAGCCGGTGCCCAAGACTGG
TGCTGCTCCCGACGTGGACATCAACAACATTAAGTTGAGCTCGCCACCCG
CCTACAAGCTGGGTGATTCCATTGCCACCCGTTTGGCCTATGGAACAGCT
CTGGCCAAGATTGGCCAGAACAACCTGCGTGTTGTTGCCCTAGACGGAGA
CACCAAGAACTCAACTTTCTCCGACAAGCTGAAGAACCTCGACCCGCAGC
GCTACATTGAGTGCTTCATCGCTGAGCAGAATCTTGTGGGAGTGGCCGTT
GGAGCCGCCTGCCGTCGCCGCACTGTGGCCTTTGTGTCCACCTTTGCCAC
CTTCTTCACCCGTGCCTTCGATCAGATCCGTATGGGCGCCATCTCGCAGA
CGAACGTTAACTTTGTGGGCTCCCACTGCGGCTGCAGTATCGGTGAGGAT
GGTCCTTCGCAGATGGGTCTGGAGGACATTGCCATGTTCCGCACCATTCC
GGGCAGCACCATCTTCTATCCCTCCGATGCAGTGAGCACGGAGCGTGCCG
TCGAACTGGCCGCCAACACCAAGGGTGTCTGCTTCATCCGTACGTCCCGT
CCCAACACCTGTGTGATCTACGACAACGAGGAACCCTTCACCATTGGCCG
CGGCAAGGTGGTGCGCCAAAAGAGCTCCGACGAGGTGCTTCTGATCGGAG
CTGGAATCACTTTGTACGAGTGCCTGGCTGCCGCCGATCAGCTGGAGAAG
AACTGCATCACCGTCCGTGTGATCGATCCGTTCACCGTGAAGCCATTGGA
CGCCGAGCTGATCATCGAGCACGGCAAGCAGTGCGGAGGACGCGTAGTCG
TCGTGGAGGATCACTACCAGCAAGGAGGCCTGGGTGAAGCTGTGCTGAGT
GCCCTGGCTGGCGAGCGCAACTTCGTTGTCAAGCACTTGTACGTGCCCAC
CGTGCCACGTTCGGGTCCTCCGTCGGTACTCATCGATATGTTCGGCATCT
CCGCACGTCACGTCGTCAACGCCGTTAACGAGATCCTCAAGGATTAGAAG
CTTTCTAGACCAT
BS17808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 1881 | CG8036-PC | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CG8036-RB | 1881 | CG8036-PB | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CG8036-RD | 1743 | CG8036-PD | 1..1743 | 155..1897 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 2235 | CG8036-RC | 208..2088 | 17..1897 | 9405 | 100 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 466..2346 | 17..1897 | 9405 | 100 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 256..2032 | 121..1897 | 8885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8671710..8673314 | 120..1724 | 8010 | 99.9 | Plus |
| 3L | 28110227 | 3L | 18292405..18293092 | 1785..1098 | 1100 | 77.3 | Minus |
| 3L | 28110227 | 3L | 18293677..18294199 | 568..46 | 1010 | 79.5 | Minus |
| 3R | 32079331 | 3R | 8673378..8673555 | 1720..1897 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 8669825..8669928 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:56:24 has no hits.
BS17808.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:23 Download gff for
BS17808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 194..2074 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:47 Download gff for
BS17808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..2346 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:56 Download gff for
BS17808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 194..2074 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:13 Download gff for
BS17808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..2346 | 17..1897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:13 Download gff for
BS17808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8669825..8669928 | 17..120 | 100 | -> | Plus |
| 3R | 8671711..8673309 | 121..1719 | 100 | -> | Plus |
| 3R | 8673378..8673555 | 1720..1897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:47 Download gff for
BS17808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4495547..4495650 | 17..120 | 100 | -> | Plus |
| arm_3R | 4497433..4499031 | 121..1719 | 100 | -> | Plus |
| arm_3R | 4499100..4499277 | 1720..1897 | 100 | | Plus |
BS17808.3prime Sequence
912 bp (772 high quality bases) assembled on 2007-05-30
> BS17808.3prime
ATGGTCTAGAAAGCTTCTAATCCTTGAGGATCTCGTTAACGGCGTTGACG
ACGTGACGTGCGGAGATGCCGAACATATCGATGAGTACCGACGGAGGACC
CGAACGTGGCACGGTGGGCACGTACAAGTGCTTGACAACGAAGTTGCGCT
CGCCAGCCAGGGCACTCAGCACAGCTTCACCCAGGCCTCCTTGCTGGTAG
TGATCCTCCACGACGACTACGCGTCCTCCGCACTGCTTGCCGTGCTCGAT
GATCAGCTCGGCGTCCAATGGCTTCACGGTGAACGGATCGATCACACGGA
CGGTGATGCAGTTCTTCTCCAGCTGATCGGCGGCAGCCAGGCACTCGTAC
AAAGTGATTCCAGCTCCGATCAGAAGCACCTCGTCGGAGCTCTTTTGGCG
CACCACCTTGCCGCGGCCAATGGTGAAGGGTTCCTCGTTGTCGTAGATCA
CACAGGTGTTGGGACGGGACGTACGGATGAAGCAGACACCCTTGGTGTTG
GCGGCCAGTTCGACGGCACGCTCCGTGCTCACTGCATCGGAGGGATAGAA
GATGGTGCTGCCCGGAATGGTGCGGAACATGGCAATGTCCTCCAGACCCA
TCTGCGAAGGACCATCCTCACCGATACTGCAGCCGCAGTGGGAGCCCACA
AAGTTAACGTTCGTCTGCGAGATGGCGCCCATACGGATCTGATCGAAGGC
ACGGGTGAAGAAGGTGGCAAAGGTGGACACAAAGGCCACAGTGCGGCGAC
GGCAGGCGGCTCCAACGGCCACTCCCACAAGATTCTGCTCAGCGATGAAG
CACTCAATGTAGCGCTGCGGGTCGAGGTTCTTCAGCTTGTCGGAGAAAGT
TGAGTTCTTGGTGTCTCCGTCTAGGGCAACAACACGCAGGTTGTTCTGGG
CAATCTTGGCCA
BS17808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-PB | 1881 | CG8036-RB | 986..1881 | 912..17 | 4455 | 99.8 | Minus |
| CG8036-PC | 1881 | CG8036-RC | 986..1881 | 912..17 | 4455 | 99.8 | Minus |
| CG8036-PD | 1743 | CG8036-RD | 848..1743 | 912..17 | 4455 | 99.8 | Minus |
| CG5103-PA | 1872 | CG5103-RA | 1189..1314 | 700..575 | 255 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RD | 2179 | CG8036-RD | 1137..2032 | 912..17 | 4465 | 99.9 | Minus |
| CG8036-RC | 2235 | CG8036-RC | 1193..2088 | 912..17 | 4465 | 99.9 | Minus |
| CG8036-RB | 2493 | CG8036-RB | 1451..2346 | 912..17 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8672592..8673314 | 912..190 | 3585 | 99.7 | Minus |
| 3L | 28110227 | 3L | 18292405..18293092 | 129..816 | 1100 | 77.3 | Plus |
| 3R | 32079331 | 3R | 8673378..8673555 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:00:30 has no hits.
BS17808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:27 Download gff for
BS17808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-PD | 849..1743 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:25 Download gff for
BS17808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 1452..2346 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:34 Download gff for
BS17808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 1452..2346 | 17..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:34 Download gff for
BS17808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8672593..8673309 | 195..911 | 99 | -> | Minus |
| 3R | 8673378..8673555 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:25 Download gff for
BS17808.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4498315..4499031 | 195..911 | 99 | -> | Minus |
| arm_3R | 4499100..4499277 | 17..194 | 100 | | Minus |
BS17808.5prime Sequence
857 bp (776 high quality bases) assembled on 2007-05-30
> BS17808.5prime
GAAGTTATCACTCGACATGTCGTACCACAAGCCCGAAGCTAAGACCGTCC
AGGATCTGAAAGATCTGGCCCAGAAACTGCGAATTCACTCTATCAACGCC
ACCCAGGCCTCCAAATCGGGCCATCCCACATCATGTGCCTCGATCGCTGA
GATCATGTCCGTGCTGTTCTTCCAGCAGCTGCGCCTGAACCTGAAGCACC
CACGCGATCCCTCCAGCGATCGCTTCATCCTGTCCAAAGGACACGCTGCT
CCCATTCTGTATGCCGCCTGGGCTGAGGCTGGTCTCTTCCCCATCGCGGA
TCTGAACAACCTGCGCAAGATCGACAGCGATCTGGAGGGTCACCCGACGC
CTCGTCTGAACTTCATCGATGTGGGCACTGGATCCCTGGGACAGGGTGTC
GCCGTCGGCGCTGGCATGGCCTATGTGGGCAAGAACTTCGACAAGGCCGA
CTACCGCACCTACGTGGTGGTGGGTGATGGTGAGTCCGCCGAGGGTTCCA
TCTGGGAGTCGCTGCACTTTGCCGGCCACTATAAACTGGACAACCTTTGC
GTGATCTTTGATGTGAACCGCTTGGGCCAGTCGGAGGCCACCTCCCTGCA
GCATAAGCTGGATGTTTACCGTGATCGTCTGGAGGCCTTCGGCTTTAATG
CCGTCGTTGTCGATGGTCATGATGTCGAGGAATTGAGCAAGGCTTTCCAT
TGTGCTGCAATCACCAAGAACAAGCCCACCGCCATCATTGCAAAGACGTT
CAAGGGCAGGGACTTCCCCAACATCGAGGATTTGGACAACTGGCACGGCA
AGCCACTGGGCGACAAGGCCGCCGAAGTGGTGAAGCATCTGGAGGGACTG
ATTGTCA
BS17808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-PB | 1881 | CG8036-RB | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG8036-PC | 1881 | CG8036-RC | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG8036-PD | 1743 | CG8036-RD | 1..703 | 155..857 | 3515 | 100 | Plus |
| CG5103-PA | 1872 | CG5103-RA | 145..206 | 161..222 | 135 | 88.7 | Plus |
| CG5103-PA | 1872 | CG5103-RA | 214..275 | 230..291 | 135 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 2235 | CG8036-RC | 208..1048 | 17..857 | 4205 | 100 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 466..1306 | 17..857 | 4205 | 100 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 256..992 | 121..857 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8671710..8672447 | 120..857 | 3690 | 100 | Plus |
| 3L | 28110227 | 3L | 18293677..18294199 | 568..46 | 1010 | 79.5 | Minus |
| 3R | 32079331 | 3R | 8669825..8669928 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:00:40 has no hits.
BS17808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:32 Download gff for
BS17808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-PC | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:27 Download gff for
BS17808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1305 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:00 Download gff for
BS17808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1305 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:00 Download gff for
BS17808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8669825..8669928 | 17..120 | 100 | -> | Plus |
| 3R | 8671711..8672446 | 121..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:27 Download gff for
BS17808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4495547..4495650 | 17..120 | 100 | -> | Plus |
| arm_3R | 4497433..4498168 | 121..856 | 100 | | Plus |
BS17808.pep Sequence
Translation from 16 to 1896
> BS17808.pep
MSYHKPEAKTVQDLKDLAQKLRIHSINATQASKSGHPTSCASIAEIMSVL
FFQQLRLNLKHPRDPSSDRFILSKGHAAPILYAAWAEAGLFPIADLNNLR
KIDSDLEGHPTPRLNFIDVGTGSLGQGVAVGAGMAYVGKNFDKADYRTYV
VVGDGESAEGSIWESLHFAGHYKLDNLCVIFDVNRLGQSEATSLQHKLDV
YRDRLEAFGFNAVVVDGHDVEELSKAFHCAAITKNKPTAIIAKTFKGRDF
PNIEDLDNWHGKPLGDKAAEVVKHLEGLIVNKNVKLTPKPVPKTGAAPDV
DINNIKLSSPPAYKLGDSIATRLAYGTALAKIGQNNLRVVALDGDTKNST
FSDKLKNLDPQRYIECFIAEQNLVGVAVGAACRRRTVAFVSTFATFFTRA
FDQIRMGAISQTNVNFVGSHCGCSIGEDGPSQMGLEDIAMFRTIPGSTIF
YPSDAVSTERAVELAANTKGVCFIRTSRPNTCVIYDNEEPFTIGRGKVVR
QKSSDEVLLIGAGITLYECLAAADQLEKNCITVRVIDPFTVKPLDAELII
EHGKQCGGRVVVVEDHYQQGGLGEAVLSALAGERNFVVKHLYVPTVPRSG
PPSVLIDMFGISARHVVNAVNEILKD*
BS17808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-PC | 626 | CG8036-PC | 1..626 | 1..626 | 3242 | 100 | Plus |
| CG8036-PB | 626 | CG8036-PB | 1..626 | 1..626 | 3242 | 100 | Plus |
| CG8036-PD | 580 | CG8036-PD | 1..580 | 47..626 | 3009 | 100 | Plus |
| CG5103-PA | 623 | CG5103-PA | 1..622 | 1..625 | 2463 | 73.6 | Plus |
