Clone Sequence Records
BS17809.3prime Sequence
633 bp (633 high quality bases) assembled on 2007-05-30
> BS17809.3prime
ATGGTCTAGAAAGCTTCTACTCTTGCTGCGTCGAGTGGTGCTGCGCACGT
GTGGGTCTGGGCCGCACTGGCACCCGGATGCAATTCTGCGGCTTATCGCC
CAGCTGCAGCTGTCCACAACGCCGCCTGTCGGTGCGCAGCCAGTTGTTCC
TGGGCTGACTGTGGCAATTCTGGTTGCGCAGCTGGCAACTATTGGCCAAC
ACCTTGCACTGCCGGTTGTCCCTGCTACGCACGCAGATTTGCTGGCTGGG
CGGTGATCTCTTGCAGACGACGGGACGTGCGGGGCAGGGATTATAGCAGG
GTCGCCGATTGGCGGCACCCGTTCCCCTCACGTTGCGGCAATCGATGTCG
CGGGTGTGCCGCACGCCCTCCGGCTGCCGTAGCACATTGGCCAGCATCAG
GTGGCAGATGTTCTCGAAACGTTGGCACTCGCCACGCGCAGTTCGTCCGC
AAACTCTGGGACTTGTCTGGGAGCAGACCTGCGGGAAGAGCGGGCAATTG
CGGGGCGTGGTGCGGGCGGTGGTAACCGGCGGACGTCGGCTCGGCGGTTG
GGTGGTGCCGCTGGCCATTGACCACAGGAGGGTCATGCCGAAAATCAAAG
TCAGTTGTTGGCTGTGCATGTCGACTGATAACT
BS17809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-PA | 603 | CG32762-RA | 1..596 | 619..24 | 2980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 854 | CG32762-RB | 67..662 | 619..24 | 2980 | 100 | Minus |
CG32762-RA | 822 | CG32762-RA | 35..630 | 619..24 | 2980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5500618..5501062 | 145..589 | 2225 | 100 | Plus |
X | 23542271 | X | 5500400..5500520 | 24..144 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:46 has no hits.
BS17809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:36 Download gff for
BS17809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-PA | 1..603 | 17..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:03 Download gff for
BS17809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 14..628 | 13..629 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for
BS17809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 25..639 | 13..629 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for
BS17809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5500389..5500520 | 13..144 | 96 | <- | Plus |
X | 5500618..5501061 | 145..588 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:03 Download gff for
BS17809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5394422..5394553 | 13..144 | 96 | <- | Plus |
arm_X | 5394651..5395094 | 145..588 | 100 | <- | Plus |
BS17809.complete Sequence
635 bp assembled on 2010-02-09
GenBank Submission: KX804094
> BS17809.complete
GAAGTTATCAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCA
TGACCCTCCTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGA
CGTCCGCCGGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTT
CCCGCAGGTCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGC
GTGGCGAGTGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAAT
GTGCTACGGCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCG
CAACGTGAGGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCT
GCCCCGCACGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATC
TGCGTGCGTAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTG
CCAGCTGCGCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGC
GCACCGACAGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAG
AATTGCATCCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCA
CTCGACGCAGCACTACTAGAAGCTTTCTAGACCAT
BS17809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 603 | CG32762-PB | 1..603 | 17..619 | 3015 | 100 | Plus |
CG32762-RA | 603 | CG32762-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 854 | CG32762-RB | 67..669 | 17..619 | 3015 | 100 | Plus |
CG32762-RA | 822 | CG32762-RA | 35..637 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5500618..5501062 | 491..47 | 2225 | 100 | Minus |
X | 23542271 | X | 5500393..5500520 | 619..492 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:12 has no hits.
BS17809.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:32 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:44 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 24..626 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:25 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 24..626 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:32 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 14..628 | 7..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:27 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 35..637 | 17..619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:27 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5501133..5501163 | 17..47 | 100 | | Minus |
X | 5500393..5500520 | 492..619 | 100 | <- | Minus |
X | 5500618..5501061 | 48..491 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:25 Download gff for
BS17809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5394426..5394553 | 492..619 | 100 | <- | Minus |
arm_X | 5394651..5395094 | 48..491 | 100 | <- | Minus |
arm_X | 5395166..5395196 | 17..47 | 100 | | Minus |
BS17809.pep Sequence
Translation from 16 to 618
> BS17809.pep
MHSQQLTLIFGMTLLWSMASGTTQPPSRRPPVTTARTTPRNCPLFPQVCS
QTSPRVCGRTARGECQRFENICHLMLANVLRQPEGVRHTRDIDCRNVRGT
GAANRRPCYNPCPARPVVCKRSPPSQQICVRSRDNRQCKVLANSCQLRNQ
NCHSQPRNNWLRTDRRRCGQLQLGDKPQNCIRVPVRPRPTRAQHHSTQHY
*
BS17809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-PB | 200 | CG32762-PB | 1..200 | 1..200 | 1116 | 100 | Plus |
CG32762-PA | 200 | CG32762-PA | 1..200 | 1..200 | 1116 | 100 | Plus |