Clone BS17809 Report

Search the DGRC for BS17809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG32762-RA
Protein status:BS17809.pep: full length peptide match
Sequenced Size:635

Clone Sequence Records

BS17809.3prime Sequence

633 bp (633 high quality bases) assembled on 2007-05-30

> BS17809.3prime
ATGGTCTAGAAAGCTTCTACTCTTGCTGCGTCGAGTGGTGCTGCGCACGT
GTGGGTCTGGGCCGCACTGGCACCCGGATGCAATTCTGCGGCTTATCGCC
CAGCTGCAGCTGTCCACAACGCCGCCTGTCGGTGCGCAGCCAGTTGTTCC
TGGGCTGACTGTGGCAATTCTGGTTGCGCAGCTGGCAACTATTGGCCAAC
ACCTTGCACTGCCGGTTGTCCCTGCTACGCACGCAGATTTGCTGGCTGGG
CGGTGATCTCTTGCAGACGACGGGACGTGCGGGGCAGGGATTATAGCAGG
GTCGCCGATTGGCGGCACCCGTTCCCCTCACGTTGCGGCAATCGATGTCG
CGGGTGTGCCGCACGCCCTCCGGCTGCCGTAGCACATTGGCCAGCATCAG
GTGGCAGATGTTCTCGAAACGTTGGCACTCGCCACGCGCAGTTCGTCCGC
AAACTCTGGGACTTGTCTGGGAGCAGACCTGCGGGAAGAGCGGGCAATTG
CGGGGCGTGGTGCGGGCGGTGGTAACCGGCGGACGTCGGCTCGGCGGTTG
GGTGGTGCCGCTGGCCATTGACCACAGGAGGGTCATGCCGAAAATCAAAG
TCAGTTGTTGGCTGTGCATGTCGACTGATAACT

BS17809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-PA 603 CG32762-RA 1..596 619..24 2980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 854 CG32762-RB 67..662 619..24 2980 100 Minus
CG32762-RA 822 CG32762-RA 35..630 619..24 2980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5500618..5501062 145..589 2225 100 Plus
X 23542271 X 5500400..5500520 24..144 605 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:33:46 has no hits.

BS17809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:36 Download gff for BS17809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-PA 1..603 17..619 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:03 Download gff for BS17809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 14..628 13..629 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for BS17809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 25..639 13..629 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for BS17809.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5500389..5500520 13..144 96 <- Plus
X 5500618..5501061 145..588 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:03 Download gff for BS17809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5394422..5394553 13..144 96 <- Plus
arm_X 5394651..5395094 145..588 100 <- Plus

BS17809.complete Sequence

635 bp assembled on 2010-02-09

GenBank Submission: KX804094

> BS17809.complete
GAAGTTATCAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCA
TGACCCTCCTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGA
CGTCCGCCGGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTT
CCCGCAGGTCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGC
GTGGCGAGTGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAAT
GTGCTACGGCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCG
CAACGTGAGGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCT
GCCCCGCACGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATC
TGCGTGCGTAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTG
CCAGCTGCGCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGC
GCACCGACAGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAG
AATTGCATCCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCA
CTCGACGCAGCACTACTAGAAGCTTTCTAGACCAT

BS17809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 603 CG32762-PB 1..603 17..619 3015 100 Plus
CG32762-RA 603 CG32762-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 854 CG32762-RB 67..669 17..619 3015 100 Plus
CG32762-RA 822 CG32762-RA 35..637 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5500618..5501062 491..47 2225 100 Minus
X 23542271 X 5500393..5500520 619..492 640 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:13:12 has no hits.

BS17809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:32 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:44 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 24..626 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:25 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 24..626 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:32 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 14..628 7..623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:27 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 35..637 17..619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:27 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
X 5501133..5501163 17..47 100   Minus
X 5500393..5500520 492..619 100 <- Minus
X 5500618..5501061 48..491 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:25 Download gff for BS17809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5394426..5394553 492..619 100 <- Minus
arm_X 5394651..5395094 48..491 100 <- Minus
arm_X 5395166..5395196 17..47 100   Minus

BS17809.pep Sequence

Translation from 16 to 618

> BS17809.pep
MHSQQLTLIFGMTLLWSMASGTTQPPSRRPPVTTARTTPRNCPLFPQVCS
QTSPRVCGRTARGECQRFENICHLMLANVLRQPEGVRHTRDIDCRNVRGT
GAANRRPCYNPCPARPVVCKRSPPSQQICVRSRDNRQCKVLANSCQLRNQ
NCHSQPRNNWLRTDRRRCGQLQLGDKPQNCIRVPVRPRPTRAQHHSTQHY
*

BS17809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-PB 200 CG32762-PB 1..200 1..200 1116 100 Plus
CG32762-PA 200 CG32762-PA 1..200 1..200 1116 100 Plus