Clone Sequence Records
BS17811.complete Sequence
809 bp assembled on 2010-02-09
GenBank Submission: KX802466
> BS17811.complete
GAAGTTATCAGTCGACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCTAGAAGCTTT
CTAGACCAT
BS17811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 849 | CG31266-PB | 72..849 | 16..793 | 3890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 993 | CG31266-RB | 95..872 | 16..793 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17132756..17133462 | 16..722 | 3535 | 100 | Plus |
3R | 32079331 | 3R | 17133526..17133598 | 721..793 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:25 has no hits.
BS17811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:48 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:38 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 1504..2280 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:28 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 96..872 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:49 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RA | 60..840 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:02 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 96..872 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:02 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17132757..17133461 | 17..721 | 100 | -> | Plus |
3R | 17133527..17133598 | 722..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:28 Download gff for
BS17811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12958479..12959183 | 17..721 | 100 | -> | Plus |
arm_3R | 12959249..12959320 | 722..793 | 100 | | Plus |
BS17811.3prime Sequence
807 bp (807 high quality bases) assembled on 2007-05-30
> BS17811.3prime
ATGGTCTAGAAAGCTTCTAGCCTATCGTACATCCATTCATGGTGGTGCGG
ATCCAATCGTGGTAGAAGGCAGTACGCGCATACACATCCGGATAGCCACG
TCCGCATGGCACACCCCAATTACCGATGCCTACCAAGCGCTGCTGCTCAT
CGATAAGCGGTCCGCCAGTGTCGCCATGGCAGGCGCCCTGGCCCGCGTCC
ATTTGGACACACACATGACCCAGGTCCACATCATCTTGGTTCTGCAACTT
CTCCCGGCATGCGTCCACCGGCAGATATGTGCCGGATGCCTCCTGCAGAT
AGCGACCATAGGTGCCCATGGCCTCGGAGCTGCCCCAACCGGCAAAGGTC
AACTTATCCCCCTCTTCCAATTCATCGATATCCGCCAAGGTTATATTCTT
TGTCACATCGTTGAACTCGATTTTGGACGACAACTGCAGCAGGGCTATGT
CATTGTGATACAGCGGCTTGTCGAAGTTGCAGTGCACATGGATCTGGCTC
ACAGTGTAGTACGGAGCATACAGATCCCACCAGTCCACAGTTCCAGTCAC
AACCAGCAGATTTAATGGCCTCAATCCCGCCACGCAACTGGCCGCTGTGA
GCACCCAAGTTTCGTCGAGTATGATGGCTCCGCACAAGTGATACGAGTAT
GCATTTTGGATACTTGCTATCCAGGGCCAGTTGCCCTCGGCGGCGGTGGT
GCCACCGATCACACGACCTTGGGGCACAGCTTCGGTGGAGCGATGCCTCT
CGATATTGGCCAAACCCGGAAGTGGTTCTCCTCGCATCCTCATGTCGACT
GATAACT
BS17811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-PA | 777 | CG31266-RA | 1..770 | 793..24 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 993 | CG31266-RB | 95..872 | 794..17 | 3860 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17132756..17133462 | 794..88 | 3535 | 100 | Minus |
3R | 32079331 | 3R | 17133526..17133598 | 89..17 | 335 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:00:50 has no hits.
BS17811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:41 Download gff for
BS17811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-PA | 1..777 | 17..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:29 Download gff for
BS17811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 92..872 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:24 Download gff for
BS17811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 92..872 | 17..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:24 Download gff for
BS17811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17132753..17133461 | 89..800 | 99 | -> | Minus |
3R | 17133527..17133598 | 17..88 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:29 Download gff for
BS17811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12958475..12959183 | 89..800 | 99 | -> | Minus |
arm_3R | 12959249..12959320 | 17..88 | 97 | | Minus |
BS17811.5prime Sequence
807 bp (807 high quality bases) assembled on 2007-05-30
> BS17811.5prime
GAAGTTATCACTCTACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCTAGAAGCTTT
CTAGACC
BS17811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-PA | 777 | CG31266-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 993 | CG31266-RB | 95..872 | 16..793 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17132756..17133462 | 16..722 | 3535 | 100 | Plus |
3R | 32079331 | 3R | 17133526..17133598 | 721..793 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:45:31 has no hits.
BS17811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:46 Download gff for
BS17811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:17 Download gff for
BS17811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 95..872 | 16..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:43 Download gff for
BS17811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 95..872 | 16..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:43 Download gff for
BS17811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17132756..17133461 | 16..721 | 100 | -> | Plus |
3R | 17133527..17133598 | 722..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:17 Download gff for
BS17811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12958478..12959183 | 16..721 | 100 | -> | Plus |
arm_3R | 12959249..12959320 | 722..793 | 100 | | Plus |
BS17811.pep Sequence
Translation from 16 to 792
> BS17811.pep
MRMRGEPLPGLANIERHRSTEAVPQGRVIGGTTAAEGNWPWIASIQNAYS
YHLCGAIILDETWVLTAASCVAGLRPLNLLVVTGTVDWWDLYAPYYTVSQ
IHVHCNFDKPLYHNDIALLQLSSKIEFNDVTKNITLADIDELEEGDKLTF
AGWGSSEAMGTYGRYLQEASGTYLPVDACREKLQNQDDVDLGHVCVQMDA
GQGACHGDTGGPLIDEQQRLVGIGNWGVPCGRGYPDVYARTAFYHDWIRT
TMNGCTIA*
BS17811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-PB | 282 | CG31266-PB | 25..282 | 1..258 | 1413 | 100 | Plus |
CG31267-PA | 275 | CG31267-PA | 44..275 | 27..258 | 637 | 47.4 | Plus |
CG5246-PA | 272 | CG5246-PA | 31..265 | 17..252 | 527 | 43.7 | Plus |
CG31265-PA | 266 | CG31265-PA | 35..260 | 26..254 | 489 | 41.9 | Plus |
CG31269-PB | 273 | CG31269-PB | 37..261 | 27..254 | 481 | 43.9 | Plus |