Clone BS17811 Report

Search the DGRC for BS17811

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG31266-RA
Protein status:BS17811.pep: full length peptide match
Sequenced Size:809

Clone Sequence Records

BS17811.complete Sequence

809 bp assembled on 2010-02-09

GenBank Submission: KX802466

> BS17811.complete
GAAGTTATCAGTCGACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCTAGAAGCTTT
CTAGACCAT

BS17811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 849 CG31266-PB 72..849 16..793 3890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 993 CG31266-RB 95..872 16..793 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17132756..17133462 16..722 3535 100 Plus
3R 32079331 3R 17133526..17133598 721..793 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:04:25 has no hits.

BS17811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:48 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:38 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 1504..2280 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:28 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 96..872 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:49 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RA 60..840 10..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:02 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 96..872 17..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:02 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17132757..17133461 17..721 100 -> Plus
3R 17133527..17133598 722..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:28 Download gff for BS17811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12958479..12959183 17..721 100 -> Plus
arm_3R 12959249..12959320 722..793 100   Plus

BS17811.3prime Sequence

807 bp (807 high quality bases) assembled on 2007-05-30

> BS17811.3prime
ATGGTCTAGAAAGCTTCTAGCCTATCGTACATCCATTCATGGTGGTGCGG
ATCCAATCGTGGTAGAAGGCAGTACGCGCATACACATCCGGATAGCCACG
TCCGCATGGCACACCCCAATTACCGATGCCTACCAAGCGCTGCTGCTCAT
CGATAAGCGGTCCGCCAGTGTCGCCATGGCAGGCGCCCTGGCCCGCGTCC
ATTTGGACACACACATGACCCAGGTCCACATCATCTTGGTTCTGCAACTT
CTCCCGGCATGCGTCCACCGGCAGATATGTGCCGGATGCCTCCTGCAGAT
AGCGACCATAGGTGCCCATGGCCTCGGAGCTGCCCCAACCGGCAAAGGTC
AACTTATCCCCCTCTTCCAATTCATCGATATCCGCCAAGGTTATATTCTT
TGTCACATCGTTGAACTCGATTTTGGACGACAACTGCAGCAGGGCTATGT
CATTGTGATACAGCGGCTTGTCGAAGTTGCAGTGCACATGGATCTGGCTC
ACAGTGTAGTACGGAGCATACAGATCCCACCAGTCCACAGTTCCAGTCAC
AACCAGCAGATTTAATGGCCTCAATCCCGCCACGCAACTGGCCGCTGTGA
GCACCCAAGTTTCGTCGAGTATGATGGCTCCGCACAAGTGATACGAGTAT
GCATTTTGGATACTTGCTATCCAGGGCCAGTTGCCCTCGGCGGCGGTGGT
GCCACCGATCACACGACCTTGGGGCACAGCTTCGGTGGAGCGATGCCTCT
CGATATTGGCCAAACCCGGAAGTGGTTCTCCTCGCATCCTCATGTCGACT
GATAACT

BS17811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-PA 777 CG31266-RA 1..770 793..24 3850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 993 CG31266-RB 95..872 794..17 3860 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17132756..17133462 794..88 3535 100 Minus
3R 32079331 3R 17133526..17133598 89..17 335 97.3 Minus
Blast to na_te.dros performed on 2015-02-11 17:00:50 has no hits.

BS17811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:41 Download gff for BS17811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-PA 1..777 17..793 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:29 Download gff for BS17811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 92..872 17..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:24 Download gff for BS17811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 92..872 17..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:24 Download gff for BS17811.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17132753..17133461 89..800 99 -> Minus
3R 17133527..17133598 17..88 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:29 Download gff for BS17811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12958475..12959183 89..800 99 -> Minus
arm_3R 12959249..12959320 17..88 97   Minus

BS17811.5prime Sequence

807 bp (807 high quality bases) assembled on 2007-05-30

> BS17811.5prime
GAAGTTATCACTCTACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCTAGAAGCTTT
CTAGACC

BS17811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-PA 777 CG31266-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 993 CG31266-RB 95..872 16..793 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17132756..17133462 16..722 3535 100 Plus
3R 32079331 3R 17133526..17133598 721..793 365 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:45:31 has no hits.

BS17811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:46 Download gff for BS17811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:17 Download gff for BS17811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 95..872 16..793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:43 Download gff for BS17811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 95..872 16..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:43 Download gff for BS17811.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17132756..17133461 16..721 100 -> Plus
3R 17133527..17133598 722..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:17 Download gff for BS17811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12958478..12959183 16..721 100 -> Plus
arm_3R 12959249..12959320 722..793 100   Plus

BS17811.pep Sequence

Translation from 16 to 792

> BS17811.pep
MRMRGEPLPGLANIERHRSTEAVPQGRVIGGTTAAEGNWPWIASIQNAYS
YHLCGAIILDETWVLTAASCVAGLRPLNLLVVTGTVDWWDLYAPYYTVSQ
IHVHCNFDKPLYHNDIALLQLSSKIEFNDVTKNITLADIDELEEGDKLTF
AGWGSSEAMGTYGRYLQEASGTYLPVDACREKLQNQDDVDLGHVCVQMDA
GQGACHGDTGGPLIDEQQRLVGIGNWGVPCGRGYPDVYARTAFYHDWIRT
TMNGCTIA*

BS17811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-PB 282 CG31266-PB 25..282 1..258 1413 100 Plus
CG31267-PA 275 CG31267-PA 44..275 27..258 637 47.4 Plus
CG5246-PA 272 CG5246-PA 31..265 17..252 527 43.7 Plus
CG31265-PA 266 CG31265-PA 35..260 26..254 489 41.9 Plus
CG31269-PB 273 CG31269-PB 37..261 27..254 481 43.9 Plus