Clone Sequence Records
BS17812.complete Sequence
1463 bp assembled on 2009-12-08
GenBank Submission: KX804850
> BS17812.complete
GAAGTTATCAGTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTGCAGTTGGTACCAAAAAGACAATTACCAAGCTCTTCAAAGAGTAT
ACGGATCTGAGCAAGTTCTGTAGTCTAGTCGGCAAGCCGGAGGATCGCTA
CAATGTACCCACCGGCTTTGGCGTGCTCTCCGAAATTCCGGAGGCCACGT
CCGCCATCCTCGAGTCACGTATTATCACTGCACTTAACAAGTACCAAAGC
TATATCGATTACCTGCACATCTCGGACCAGTTCAGTGGGCCCATCCAGCA
GGAAGAGGGTGGCACCCTCAAGCAGCCCGAAACCAAGGCCGTGCTTCTCG
CAGGCTTCAATTTGCCGAAGCACGCCGAAATGGAGACCATTAAGCCGTTG
TTATTGTTGATCTTTTATTTAATGGAGCGTTTAAAGACCTATCGCATGTC
CAAGGAGGGCAAAGCCAAGTCGGACAAAAACCGTCAGCGCGTGGAGGAGG
AGTTCTTGAAGAGCACCCATGCCGCCCGCGCCGAGGCTGCCGCTCAGAGA
CGTGAGGATAAGCGTAAGCAGGAGAAGGAGCGCATTCTGGCCGACGAGGA
CCCAGAGAAGCAGCGCCGTTGGGAGGCTAAGGAGCAGAAGCGCCAGGCCA
AGAGGAATGCGCCCAAGATGAAGAGACTGGCCGTCAAATCCCTGTAGAAG
CTTTCTAGACCAT
BS17812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1431 | CG17593-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
CG17593-RA | 1431 | CG17593-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1832 | CG17593-RB | 113..1544 | 17..1448 | 7160 | 100 | Plus |
CG17593-RA | 1674 | CG17593-RA | 113..1544 | 17..1448 | 7160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3515714..3516268 | 305..859 | 2775 | 100 | Plus |
2L | 23513712 | 2L | 3516329..3516678 | 859..1208 | 1750 | 100 | Plus |
2L | 23513712 | 2L | 3514984..3515278 | 17..311 | 1475 | 100 | Plus |
2L | 23513712 | 2L | 3516734..3516976 | 1206..1448 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:52:14 has no hits.
BS17812.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:27 Download gff for
BS17812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 248..1678 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:04 Download gff for
BS17812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..1543 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:09 Download gff for
BS17812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 248..1678 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:48 Download gff for
BS17812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..1543 | 17..1447 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:48 Download gff for
BS17812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
2L | 3515720..3516268 | 311..859 | 100 | -> | Plus |
2L | 3516330..3516677 | 860..1207 | 100 | -> | Plus |
2L | 3516736..3516975 | 1208..1447 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:04 Download gff for
BS17812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
arm_2L | 3515720..3516268 | 311..859 | 100 | -> | Plus |
arm_2L | 3516330..3516677 | 860..1207 | 100 | -> | Plus |
arm_2L | 3516736..3516975 | 1208..1447 | 100 | | Plus |
BS17812.3prime Sequence
817 bp (744 high quality bases) assembled on 2007-05-30
> BS17812.3prime
ATGGTCTAGAAAGCTTCTACCGTTATTTGACGGCCAGTCTCTTCATCTTG
GGCGCATTCCTCTTGGCCTGGCGCTTCTGCTCCTTAGCCTCCCAACGGCG
CTGCTTCTCTGGGTCCTCGTCGGCCAGAATGCGCTCCTTCTCCTGCTTAC
GCTTATCCTCACGTCTCTGAGCGGCAGCCTCGGCGCGGGCGGCATGGGTG
CTCTTCAAGAACTCCTCCTCCACGCGCTGACGGTTTTTGTCCGACTTGGC
TTTGCCCTCCTTGGACATGCGATAGGTCTTTAAACGCTCCATTAAATAAA
AGATCAACAATAACAACGGCTTAATGGTCTCCATTTCGGCGTGCTTCGGC
AAATTGAAGCCTGCGAGAAGCACGGCCTTGGTTTCGGGCTGCTTGAGGGT
GCCACCCTCTTCCTGCTGGATGGGCCCACTGAACTGGTCCGAGATGTGCA
GGTAATCGATATAGCTTTGGTACTTGTTAAGTGCAGTGATAATACGTGAC
TCGAGGATGGCGGACGTGGCCTCCGGAATTTCGGAGAGCACGCCAAAGCC
GGTGGGTACATTGTAGCGATCCTCCGGCTTGCCGACTAGACTACAGAACT
TGCTCAGATCCGTATACTCTTTGAAGAGCTTGGTAATTGTCTTTTTGGTA
CCAACTGCAAATACAAAGGCATCCATTACACCGCGTGTGAGTTCAATTTT
GATGTGGGCCTGGTCCAGCTGTGGGCGCATTAGTCCCGCCACCAAGGAGA
CCAGATCCTGTCGCTTGATCATCTTCAGCTCGACGAGCATGCCTTCGCAA
CAGGTCCTGCCGGAGCA
BS17812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-PA | 1431 | CG17593-RA | 631..1423 | 817..25 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1832 | CG17593-RB | 743..1535 | 817..25 | 3965 | 100 | Minus |
CG17593-RA | 1674 | CG17593-RA | 743..1535 | 817..25 | 3965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3516329..3516678 | 605..256 | 1750 | 100 | Minus |
2L | 23513712 | 2L | 3516734..3516967 | 258..25 | 1170 | 100 | Minus |
2L | 23513712 | 2L | 3516056..3516268 | 817..605 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:47:44 has no hits.
BS17812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:50 Download gff for
BS17812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-PA | 632..1431 | 17..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:00 Download gff for
BS17812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 744..1544 | 16..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:16 Download gff for
BS17812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 744..1544 | 16..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:16 Download gff for
BS17812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3516057..3516268 | 605..816 | 100 | -> | Minus |
2L | 3516330..3516677 | 257..604 | 100 | -> | Minus |
2L | 3516736..3516976 | 16..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:00 Download gff for
BS17812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3516057..3516268 | 605..816 | 100 | -> | Minus |
arm_2L | 3516330..3516677 | 257..604 | 100 | -> | Minus |
arm_2L | 3516736..3516976 | 16..256 | 98 | | Minus |
BS17812.5prime Sequence
859 bp (764 high quality bases) assembled on 2007-05-30
> BS17812.5prime
GAAGTTATCACTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTGCAGTTGGTACCAAAAAGACAATTACCAAGCTCTTCAAAGAGTAT
ACGGATCTG
BS17812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-PA | 1431 | CG17593-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1832 | CG17593-RB | 113..955 | 17..859 | 4215 | 100 | Plus |
CG17593-RA | 1674 | CG17593-RA | 113..955 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3515714..3516268 | 305..859 | 2775 | 100 | Plus |
2L | 23513712 | 2L | 3514984..3515278 | 17..311 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:42 has no hits.
BS17812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:56 Download gff for
BS17812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:10 Download gff for
BS17812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..955 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:35 Download gff for
BS17812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..955 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:35 Download gff for
BS17812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
2L | 3515720..3516268 | 311..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:10 Download gff for
BS17812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
arm_2L | 3515720..3516268 | 311..859 | 100 | | Plus |
BS17812.pep Sequence
Translation from 16 to 1446
> BS17812.pep
MRPVFAFLLLALICFASTKSESDFEEDDSDDFAEFDDGNFYAEPAAKNAD
SFSGGAGSSHGESRDDPPAKEPRKQAQNQESDEEDGLVEDDDEFEHFQDE
EEFEGYDGGDSKDPPIDQKVEPKLNIPNIPLHFRTHWDSYWMEMLMVAGL
LAYFANFFAGKAKNARLAQLWFSTHRALLDENFALVGDDGKAENENPGLI
KESESLYTLWCSGRTCCEGMLVELKMIKRQDLVSLVAGLMRPQLDQAHIK
IELTRGVMDAFVFAVGTKKTITKLFKEYTDLSKFCSLVGKPEDRYNVPTG
FGVLSEIPEATSAILESRIITALNKYQSYIDYLHISDQFSGPIQQEEGGT
LKQPETKAVLLAGFNLPKHAEMETIKPLLLLIFYLMERLKTYRMSKEGKA
KSDKNRQRVEEEFLKSTHAARAEAAAQRREDKRKQEKERILADEDPEKQR
RWEAKEQKRQAKRNAPKMKRLAVKSL*
BS17812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-PB | 476 | CG17593-PB | 1..476 | 1..476 | 2472 | 100 | Plus |
CG17593-PA | 476 | CG17593-PA | 1..476 | 1..476 | 2472 | 100 | Plus |