Clone BS17812 Report

Search the DGRC for BS17812

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG17593-RA
Protein status:BS17812.pep: full length peptide match
Sequenced Size:1463

Clone Sequence Records

BS17812.complete Sequence

1463 bp assembled on 2009-12-08

GenBank Submission: KX804850

> BS17812.complete
GAAGTTATCAGTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTGCAGTTGGTACCAAAAAGACAATTACCAAGCTCTTCAAAGAGTAT
ACGGATCTGAGCAAGTTCTGTAGTCTAGTCGGCAAGCCGGAGGATCGCTA
CAATGTACCCACCGGCTTTGGCGTGCTCTCCGAAATTCCGGAGGCCACGT
CCGCCATCCTCGAGTCACGTATTATCACTGCACTTAACAAGTACCAAAGC
TATATCGATTACCTGCACATCTCGGACCAGTTCAGTGGGCCCATCCAGCA
GGAAGAGGGTGGCACCCTCAAGCAGCCCGAAACCAAGGCCGTGCTTCTCG
CAGGCTTCAATTTGCCGAAGCACGCCGAAATGGAGACCATTAAGCCGTTG
TTATTGTTGATCTTTTATTTAATGGAGCGTTTAAAGACCTATCGCATGTC
CAAGGAGGGCAAAGCCAAGTCGGACAAAAACCGTCAGCGCGTGGAGGAGG
AGTTCTTGAAGAGCACCCATGCCGCCCGCGCCGAGGCTGCCGCTCAGAGA
CGTGAGGATAAGCGTAAGCAGGAGAAGGAGCGCATTCTGGCCGACGAGGA
CCCAGAGAAGCAGCGCCGTTGGGAGGCTAAGGAGCAGAAGCGCCAGGCCA
AGAGGAATGCGCCCAAGATGAAGAGACTGGCCGTCAAATCCCTGTAGAAG
CTTTCTAGACCAT

BS17812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1431 CG17593-PB 1..1431 17..1447 7155 100 Plus
CG17593-RA 1431 CG17593-PA 1..1431 17..1447 7155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1832 CG17593-RB 113..1544 17..1448 7160 100 Plus
CG17593-RA 1674 CG17593-RA 113..1544 17..1448 7160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3515714..3516268 305..859 2775 100 Plus
2L 23513712 2L 3516329..3516678 859..1208 1750 100 Plus
2L 23513712 2L 3514984..3515278 17..311 1475 100 Plus
2L 23513712 2L 3516734..3516976 1206..1448 1215 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:52:14 has no hits.

BS17812.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:27 Download gff for BS17812.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 248..1678 17..1447 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:04 Download gff for BS17812.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..1543 17..1447 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:09 Download gff for BS17812.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 248..1678 17..1447 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:48 Download gff for BS17812.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..1543 17..1447 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:48 Download gff for BS17812.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3514984..3515277 17..310 100 -> Plus
2L 3515720..3516268 311..859 100 -> Plus
2L 3516330..3516677 860..1207 100 -> Plus
2L 3516736..3516975 1208..1447 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:04 Download gff for BS17812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3514984..3515277 17..310 100 -> Plus
arm_2L 3515720..3516268 311..859 100 -> Plus
arm_2L 3516330..3516677 860..1207 100 -> Plus
arm_2L 3516736..3516975 1208..1447 100   Plus

BS17812.3prime Sequence

817 bp (744 high quality bases) assembled on 2007-05-30

> BS17812.3prime
ATGGTCTAGAAAGCTTCTACCGTTATTTGACGGCCAGTCTCTTCATCTTG
GGCGCATTCCTCTTGGCCTGGCGCTTCTGCTCCTTAGCCTCCCAACGGCG
CTGCTTCTCTGGGTCCTCGTCGGCCAGAATGCGCTCCTTCTCCTGCTTAC
GCTTATCCTCACGTCTCTGAGCGGCAGCCTCGGCGCGGGCGGCATGGGTG
CTCTTCAAGAACTCCTCCTCCACGCGCTGACGGTTTTTGTCCGACTTGGC
TTTGCCCTCCTTGGACATGCGATAGGTCTTTAAACGCTCCATTAAATAAA
AGATCAACAATAACAACGGCTTAATGGTCTCCATTTCGGCGTGCTTCGGC
AAATTGAAGCCTGCGAGAAGCACGGCCTTGGTTTCGGGCTGCTTGAGGGT
GCCACCCTCTTCCTGCTGGATGGGCCCACTGAACTGGTCCGAGATGTGCA
GGTAATCGATATAGCTTTGGTACTTGTTAAGTGCAGTGATAATACGTGAC
TCGAGGATGGCGGACGTGGCCTCCGGAATTTCGGAGAGCACGCCAAAGCC
GGTGGGTACATTGTAGCGATCCTCCGGCTTGCCGACTAGACTACAGAACT
TGCTCAGATCCGTATACTCTTTGAAGAGCTTGGTAATTGTCTTTTTGGTA
CCAACTGCAAATACAAAGGCATCCATTACACCGCGTGTGAGTTCAATTTT
GATGTGGGCCTGGTCCAGCTGTGGGCGCATTAGTCCCGCCACCAAGGAGA
CCAGATCCTGTCGCTTGATCATCTTCAGCTCGACGAGCATGCCTTCGCAA
CAGGTCCTGCCGGAGCA

BS17812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PA 1431 CG17593-RA 631..1423 817..25 3965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1832 CG17593-RB 743..1535 817..25 3965 100 Minus
CG17593-RA 1674 CG17593-RA 743..1535 817..25 3965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3516329..3516678 605..256 1750 100 Minus
2L 23513712 2L 3516734..3516967 258..25 1170 100 Minus
2L 23513712 2L 3516056..3516268 817..605 1065 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:47:44 has no hits.

BS17812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:50 Download gff for BS17812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-PA 632..1431 17..816 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:00 Download gff for BS17812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 744..1544 16..816 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:16 Download gff for BS17812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 744..1544 16..816 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:16 Download gff for BS17812.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3516057..3516268 605..816 100 -> Minus
2L 3516330..3516677 257..604 100 -> Minus
2L 3516736..3516976 16..256 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:00 Download gff for BS17812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3516057..3516268 605..816 100 -> Minus
arm_2L 3516330..3516677 257..604 100 -> Minus
arm_2L 3516736..3516976 16..256 98   Minus

BS17812.5prime Sequence

859 bp (764 high quality bases) assembled on 2007-05-30

> BS17812.5prime
GAAGTTATCACTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTGCAGTTGGTACCAAAAAGACAATTACCAAGCTCTTCAAAGAGTAT
ACGGATCTG

BS17812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PA 1431 CG17593-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1832 CG17593-RB 113..955 17..859 4215 100 Plus
CG17593-RA 1674 CG17593-RA 113..955 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3515714..3516268 305..859 2775 100 Plus
2L 23513712 2L 3514984..3515278 17..311 1475 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:44:42 has no hits.

BS17812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:36:56 Download gff for BS17812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:10 Download gff for BS17812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..955 17..859 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:35 Download gff for BS17812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..955 17..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:35 Download gff for BS17812.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3514984..3515277 17..310 100 -> Plus
2L 3515720..3516268 311..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:10 Download gff for BS17812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3514984..3515277 17..310 100 -> Plus
arm_2L 3515720..3516268 311..859 100   Plus

BS17812.pep Sequence

Translation from 16 to 1446

> BS17812.pep
MRPVFAFLLLALICFASTKSESDFEEDDSDDFAEFDDGNFYAEPAAKNAD
SFSGGAGSSHGESRDDPPAKEPRKQAQNQESDEEDGLVEDDDEFEHFQDE
EEFEGYDGGDSKDPPIDQKVEPKLNIPNIPLHFRTHWDSYWMEMLMVAGL
LAYFANFFAGKAKNARLAQLWFSTHRALLDENFALVGDDGKAENENPGLI
KESESLYTLWCSGRTCCEGMLVELKMIKRQDLVSLVAGLMRPQLDQAHIK
IELTRGVMDAFVFAVGTKKTITKLFKEYTDLSKFCSLVGKPEDRYNVPTG
FGVLSEIPEATSAILESRIITALNKYQSYIDYLHISDQFSGPIQQEEGGT
LKQPETKAVLLAGFNLPKHAEMETIKPLLLLIFYLMERLKTYRMSKEGKA
KSDKNRQRVEEEFLKSTHAARAEAAAQRREDKRKQEKERILADEDPEKQR
RWEAKEQKRQAKRNAPKMKRLAVKSL*

BS17812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PB 476 CG17593-PB 1..476 1..476 2472 100 Plus
CG17593-PA 476 CG17593-PA 1..476 1..476 2472 100 Plus