Clone BS17813 Report

Search the DGRC for BS17813

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptSod3-RA
Protein status:BS17813.pep: full length peptide match
Sequenced Size:578

Clone Sequence Records

BS17813.complete Sequence

578 bp assembled on 2010-02-09

GenBank Submission: KX801456

> BS17813.complete
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGTAAAAGCTTTCTAGACCAT

BS17813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 546 CG9027-PA 1..546 17..562 2730 100 Plus
Sod3-RB 546 CG9027-PB 1..546 17..562 2730 100 Plus
Sod3-RE 732 CG9027-PE 1..542 17..558 2710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 107..653 17..563 2735 100 Plus
Sod3-RB 1040 CG9027-RB 251..797 17..563 2735 100 Plus
Sod3-RE 1228 CG9027-RE 107..648 17..558 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 313..79 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 536..306 1155 100 Minus
2R 25286936 2R 11382249..11382311 79..17 315 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:03:31 has no hits.

BS17813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:21 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 10..567 5..562 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:30 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1778..2321 17..560 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:02 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 251..794 17..560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:21 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1766..2328 5..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:41 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 251..794 17..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:41 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11381571..11381594 537..560 100 <- Minus
2R 11381663..11381891 308..536 100 <- Minus
2R 11381955..11382182 80..307 100 <- Minus
2R 11382249..11382311 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:02 Download gff for BS17813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269076..7269099 537..560 100 <- Minus
arm_2R 7269168..7269396 308..536 100 <- Minus
arm_2R 7269460..7269687 80..307 100 <- Minus
arm_2R 7269754..7269816 17..79 100   Minus

BS17813.3prime Sequence

576 bp (576 high quality bases) assembled on 2007-05-30

> BS17813.3prime
ATGGTCTAGAAAGCTTTTACTTGATGCCAATAACACCACAGGCAATGCGG
CCGCCTGCATTGCCGGTCTTCTTGGAATCCGTGTGGTTGCCCAGACCGAG
ATCATCCTCCAATTCGTGGACAACAACTCCCCTGCCAATGATCCCCAGCT
TGCCAGTTAAGGTGATCACCTGATCCGTGTATGTAACGTCGATAATGCCC
GTGGAGTTGGCCTCCAGGTTGCCCAGATCGCCAACATGACGCACCTCGTG
ATCGGGGCCACCGTGATCAACCTTATCGGGGTTATAGTGAGCACCCATGC
TGATGCATCCATTGGTCAGATCTCCCTTCTCGTGAATGTGGAAGCCGTGC
TTGCCCTCCTTCAATCCCTCCAGCTGGACGCGCACATGGACATTCTGGCC
ACAGTCGTTCTGCGTAAAGGTCACGTTGCCCTTGACCTGGGTATTATCCG
ATTGCACGGGTCCAATCAGATAGGCAATGGCTTGAATGGGCATATTGCGC
GTCTGCGCAGCAGAGCAAATTGTGGCACAGAGTGCCAGGCTAACAACAAG
ATATTGCATCATGTCGACTGATAACT

BS17813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9027-PB 546 CG9027-RB 1..546 562..17 2730 100 Minus
CG9027-PA 546 CG9027-RA 1..546 562..17 2730 100 Minus
CG9027-PC 567 CG9027-RC 22..567 562..17 2730 100 Minus
CG9027-PD 654 CG9027-RD 1..542 562..21 2710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 107..653 562..16 2735 100 Minus
Sod3-RB 1040 CG9027-RB 251..797 562..16 2735 100 Minus
Sod3-RE 1228 CG9027-RE 107..648 562..21 2710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 266..500 1160 99.6 Plus
2R 25286936 2R 11381663..11381893 43..273 1155 100 Plus
2R 25286936 2R 11382249..11382311 500..562 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:45:39 has no hits.

BS17813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:02 Download gff for BS17813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9027-PC 10..567 17..574 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:18 Download gff for BS17813.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..801 9..567 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:59 Download gff for BS17813.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..801 9..567 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:59 Download gff for BS17813.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11381663..11381891 43..271 100 <- Plus
2R 11381955..11382182 272..499 100 <- Plus
2R 11382249..11382323 500..574 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:18 Download gff for BS17813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269168..7269396 43..271 100 <- Plus
arm_2R 7269460..7269687 272..499 100 <- Plus
arm_2R 7269754..7269828 500..574 93   Plus

BS17813.5prime Sequence

576 bp (576 high quality bases) assembled on 2007-05-30

> BS17813.5prime
GAAGTTATCACTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGTAAAAGCTTTCTAGACC

BS17813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9027-PB 546 CG9027-RB 1..546 17..562 2730 100 Plus
CG9027-PA 546 CG9027-RA 1..546 17..562 2730 100 Plus
CG9027-PC 567 CG9027-RC 22..567 17..562 2730 100 Plus
CG9027-PD 654 CG9027-RD 1..542 17..558 2710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 107..653 17..563 2735 100 Plus
Sod3-RB 1040 CG9027-RB 251..797 17..563 2735 100 Plus
Sod3-RE 1228 CG9027-RE 107..648 17..558 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 313..79 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 536..306 1155 100 Minus
2R 25286936 2R 11382249..11382311 79..17 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:01:00 has no hits.

BS17813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:06 Download gff for BS17813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9027-PC 17..567 12..562 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:30 Download gff for BS17813.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..801 12..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:42 Download gff for BS17813.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..801 12..570 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:42 Download gff for BS17813.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11381663..11381891 308..536 100 <- Minus
2R 11381955..11382182 80..307 100 <- Minus
2R 11382249..11382316 12..79 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:30 Download gff for BS17813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269168..7269396 308..536 100 <- Minus
arm_2R 7269460..7269687 80..307 100 <- Minus
arm_2R 7269754..7269821 12..79 97   Minus

BS17813.pep Sequence

Translation from 16 to 561

> BS17813.pep
MMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFT
QNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDH
GGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHE
LEDDLGLGNHTDSKKTGNAGGRIACGVIGIK*

BS17813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-PA 181 CG9027-PA 1..181 1..181 960 100 Plus
Sod3-PB 181 CG9027-PB 1..181 1..181 960 100 Plus
Sod3-PD 217 CG9027-PD 1..180 1..180 955 100 Plus
Sod3-PE 243 CG9027-PE 1..180 1..180 955 100 Plus
Sod-PA 153 CG11793-PA 10..150 40..180 374 55.3 Plus