Clone Sequence Records
BS17813.complete Sequence
578 bp assembled on 2010-02-09
GenBank Submission: KX801456
> BS17813.complete
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGTAAAAGCTTTCTAGACCAT
BS17813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 546 | CG9027-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Sod3-RB | 546 | CG9027-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
Sod3-RE | 732 | CG9027-PE | 1..542 | 17..558 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 107..653 | 17..563 | 2735 | 100 | Plus |
Sod3-RB | 1040 | CG9027-RB | 251..797 | 17..563 | 2735 | 100 | Plus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 17..558 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 313..79 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 536..306 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382311 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:31 has no hits.
BS17813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:21 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 10..567 | 5..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:30 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 1778..2321 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:02 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 251..794 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:21 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 1766..2328 | 5..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:41 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 251..794 | 17..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:41 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381571..11381594 | 537..560 | 100 | <- | Minus |
2R | 11381663..11381891 | 308..536 | 100 | <- | Minus |
2R | 11381955..11382182 | 80..307 | 100 | <- | Minus |
2R | 11382249..11382311 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:02 Download gff for
BS17813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269076..7269099 | 537..560 | 100 | <- | Minus |
arm_2R | 7269168..7269396 | 308..536 | 100 | <- | Minus |
arm_2R | 7269460..7269687 | 80..307 | 100 | <- | Minus |
arm_2R | 7269754..7269816 | 17..79 | 100 | | Minus |
BS17813.3prime Sequence
576 bp (576 high quality bases) assembled on 2007-05-30
> BS17813.3prime
ATGGTCTAGAAAGCTTTTACTTGATGCCAATAACACCACAGGCAATGCGG
CCGCCTGCATTGCCGGTCTTCTTGGAATCCGTGTGGTTGCCCAGACCGAG
ATCATCCTCCAATTCGTGGACAACAACTCCCCTGCCAATGATCCCCAGCT
TGCCAGTTAAGGTGATCACCTGATCCGTGTATGTAACGTCGATAATGCCC
GTGGAGTTGGCCTCCAGGTTGCCCAGATCGCCAACATGACGCACCTCGTG
ATCGGGGCCACCGTGATCAACCTTATCGGGGTTATAGTGAGCACCCATGC
TGATGCATCCATTGGTCAGATCTCCCTTCTCGTGAATGTGGAAGCCGTGC
TTGCCCTCCTTCAATCCCTCCAGCTGGACGCGCACATGGACATTCTGGCC
ACAGTCGTTCTGCGTAAAGGTCACGTTGCCCTTGACCTGGGTATTATCCG
ATTGCACGGGTCCAATCAGATAGGCAATGGCTTGAATGGGCATATTGCGC
GTCTGCGCAGCAGAGCAAATTGTGGCACAGAGTGCCAGGCTAACAACAAG
ATATTGCATCATGTCGACTGATAACT
BS17813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9027-PB | 546 | CG9027-RB | 1..546 | 562..17 | 2730 | 100 | Minus |
CG9027-PA | 546 | CG9027-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
CG9027-PC | 567 | CG9027-RC | 22..567 | 562..17 | 2730 | 100 | Minus |
CG9027-PD | 654 | CG9027-RD | 1..542 | 562..21 | 2710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 107..653 | 562..16 | 2735 | 100 | Minus |
Sod3-RB | 1040 | CG9027-RB | 251..797 | 562..16 | 2735 | 100 | Minus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 562..21 | 2710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 266..500 | 1160 | 99.6 | Plus |
2R | 25286936 | 2R | 11381663..11381893 | 43..273 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 11382249..11382311 | 500..562 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:45:39 has no hits.
BS17813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:02 Download gff for
BS17813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-PC | 10..567 | 17..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:18 Download gff for
BS17813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..801 | 9..567 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:59 Download gff for
BS17813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..801 | 9..567 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:59 Download gff for
BS17813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381663..11381891 | 43..271 | 100 | <- | Plus |
2R | 11381955..11382182 | 272..499 | 100 | <- | Plus |
2R | 11382249..11382323 | 500..574 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:18 Download gff for
BS17813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269168..7269396 | 43..271 | 100 | <- | Plus |
arm_2R | 7269460..7269687 | 272..499 | 100 | <- | Plus |
arm_2R | 7269754..7269828 | 500..574 | 93 | | Plus |
BS17813.5prime Sequence
576 bp (576 high quality bases) assembled on 2007-05-30
> BS17813.5prime
GAAGTTATCACTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGTAAAAGCTTTCTAGACC
BS17813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9027-PB | 546 | CG9027-RB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG9027-PA | 546 | CG9027-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG9027-PC | 567 | CG9027-RC | 22..567 | 17..562 | 2730 | 100 | Plus |
CG9027-PD | 654 | CG9027-RD | 1..542 | 17..558 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 107..653 | 17..563 | 2735 | 100 | Plus |
Sod3-RB | 1040 | CG9027-RB | 251..797 | 17..563 | 2735 | 100 | Plus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 17..558 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 313..79 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 536..306 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382311 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:01:00 has no hits.
BS17813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:06 Download gff for
BS17813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-PC | 17..567 | 12..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:30 Download gff for
BS17813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..801 | 12..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:42 Download gff for
BS17813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..801 | 12..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:42 Download gff for
BS17813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381663..11381891 | 308..536 | 100 | <- | Minus |
2R | 11381955..11382182 | 80..307 | 100 | <- | Minus |
2R | 11382249..11382316 | 12..79 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:30 Download gff for
BS17813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269168..7269396 | 308..536 | 100 | <- | Minus |
arm_2R | 7269460..7269687 | 80..307 | 100 | <- | Minus |
arm_2R | 7269754..7269821 | 12..79 | 97 | | Minus |
BS17813.pep Sequence
Translation from 16 to 561
> BS17813.pep
MMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFT
QNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDH
GGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHE
LEDDLGLGNHTDSKKTGNAGGRIACGVIGIK*
BS17813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-PA | 181 | CG9027-PA | 1..181 | 1..181 | 960 | 100 | Plus |
Sod3-PB | 181 | CG9027-PB | 1..181 | 1..181 | 960 | 100 | Plus |
Sod3-PD | 217 | CG9027-PD | 1..180 | 1..180 | 955 | 100 | Plus |
Sod3-PE | 243 | CG9027-PE | 1..180 | 1..180 | 955 | 100 | Plus |
Sod-PA | 153 | CG11793-PA | 10..150 | 40..180 | 374 | 55.3 | Plus |