Clone Sequence Records
BS17814.complete Sequence
2402 bp assembled on 2009-12-08
GenBank Submission: KX804014
> BS17814.complete
GAAGTTATCAGTCGACATGGTGCAGAGCGAGAATCCCAGTAGCCTGGGAG
CCGAGCTGCAGGACTTGGAGCACGGAAGGCGGGAGTCCCGGGATGAATCC
GACGTCGAGTCCAGACTTCTGAACAATGGAAAGAGCTACGACAAGGAAAA
GGAGGCGGGCAATCAGGACGGTGAAGAGACCACTCCGAAGACAGGGAAAT
CTAAGAAGAAGAAACAGAAATCCGAGCAGGATCGTCTCATGACCGCGGAA
ATTAACAAGCTGCTGGCGGAATCCCCGCTGGAGAAGAATGTTACCTGCGG
CTTCTGGATATTCAAGGGAACGTTTTACCAAAGATTTGCCAATCAAACTG
CTTACGTTTTACTTTACGGAATCGTGGGCTGCATCTTTTCAATGACATAT
GCCTACTTTAACGGCACGATCACCACAATAGAGAAGCGCTTTAAGATACC
ATCGAAGAATACAGGCATTATCTCGGTGGGAAACGATATAAGTCAGACCT
TGGTGTCGGCGGTTTTGGCCTACTATGCGGGAAAGGGCCATCGGCCAAGA
TGGATTGGTTTTGGTCTTCTTACCATCGTATTTTTCTGCATTCTGACCAC
CGCACCGCACTTTCTCTACGGACCCGGCGAGGATGCACTTGCTCTGACCT
CGGAGTTCGGCGGGATGCCCGATGAAAATGCCACAATGGAGGCTATCGAG
GAGCAGCGATCCAAGACCCTATGCCGCTTGAATGGAGGAGGAGCGGAGTG
CGAGGTCGGTGAAGGAAACTTTGCGCCCCAACTTTTGCTCTTCGTAGCGC
AGTTCATATCTGGAATTGGAGGATCGCTATACTACACGTTGGGAGTGTCC
TACATGGACGATAATACTAAAAAATCCAAAACTCCGGCTTTGTTGAGTCT
TTCATACTTTTTGCGCATGTTGGGTCCTGCCATTGGATACGCCCTGGCAT
CCTTCTGCCTGCGCCTGTATATCGCACCACAAATGCATCCGGTGATCAAC
AACAAGGATCCCCGCTGGCTGGGCGCCTGGTGGCTGGGCTGGCTGGTGAT
GGGCGGCCTGCTCTCCTTCTCGGGAGTTTTCCTCTCCATGTTTCCCAAAG
AATTGCCCAGAGCAGTGGCCCGCCGGAAGGTGGAGGAGAATCGACGACGC
GAAAAGGAACGACTGTCGGTGAAGAGTACGGAGAAGGAACGCCTTACTGC
GGAACTGGATCAGAAGACTACCGCGGAAGCGAAGGCCTCCTTCCAGGACA
TGCTGAAAACCTTTCGTCGCCTGATCACCAACAAGACCTACATGTGCAAT
ACACTCTCGAGCATTTTCTACCTAGTGGGCTATACGCCGTACTGGATATT
CACGCCCAAGTACATCGAGGTTCAGTATCGCCAGTCAGCGGCCACTTCAT
CCATGGTCACCGGCACAGTGGCCCTGGCCTTCTCCGCCGTGGGAGTGCTG
CTCTCCGGTTTTATCATCTCTCGCTATAAGCCGAGGGCTCGCTATATGGC
CGCTTGGAACGTGATTGTGGGCTTCCTCACAGTTGCCGGAATCCTGGCCT
ACGCCTTCATCGGCTGTCCGGGAAATGAGAGTTCCGTGATCGTCAATATT
CACGACAGCTCGTTAGCTGGCAACACTACCACATGCAATTCGGCCTGCTC
CTGTGACTACGTCCGCTATTCCCCGGTATGCGGGGAGAACAACATGACCT
ACATCTCCGCCTGCCACGCTGGGTGCAAAAAGTTGCTCGTCAACTCCGAA
GGAAAAAAGATCTTCTACGATTGCTCCTGCATTCCTAGCGATGATGCTGG
TAATTCCACGAGCCAATTTAAGCGCCTAACCAGCTTCGATTTGAGTAACG
ATGAGGTTAGCCAGAACACCTCGGTTCATAGTCAGTTGGAGGCTCTAGCG
AATGGACAGGCAATGCCCGGCGCATGTCCCGTAAATTGTTGGACACAATT
TGTGGCCTTTTTGGCCGTGATGTGTTGCCTGAAGTTCGTGGGAGCCAGCG
GCAGAGCCTCGAACTTCCTGGTTTCCGTGCGCTGTGTGCCGGAAAAGGAC
AAGACGGCGGCCATGGGATTCGGAATGACTCTGTGCTCGATGCTGGCCTT
TATTCCTAGTCCTATATTCTTTGGCTGGGTTTTCGATAGGGTCTGTTTGG
TGTGGGGCAAGACCTGCACAAATAAGGGAAACTGCTGGCTCTACGATCCG
CTTTCCATGAGGTACACTCTCAACTTCACCGCAGCTGTCTTTATTGCCAT
TGGAGCCATTTTCGATCTGGGGGTCTGGTACTACGCAAAGGATCTGAAAA
TCTTCGACGAGGACGTCAAGGAGGTGGAGATGAAGATCGTTCAGCACGAG
GAGGAGGCCAACAACGAAAAGAATACAGAGATTTAGAAGCTTTCTAGACC
AT
BS17814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Dc-RC | 2370 | CG3380-PC | 1..2370 | 17..2386 | 11850 | 100 | Plus |
| Oatp58Dc-RB | 2370 | CG3380-PB | 1..2370 | 17..2386 | 11850 | 100 | Plus |
| Oatp58Dc-RA | 2370 | CG3380-PA | 1..2370 | 17..2386 | 11850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Dc-RC | 2794 | CG3380-RC | 303..2672 | 17..2386 | 11850 | 100 | Plus |
| Oatp58Dc-RB | 3014 | CG3380-RB | 523..2892 | 17..2386 | 11850 | 100 | Plus |
| Oatp58Dc-RA | 3056 | CG3380-RA | 565..2934 | 17..2386 | 11850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22224545..22225407 | 1759..897 | 4315 | 100 | Minus |
| 2R | 25286936 | 2R | 22224030..22224485 | 2213..1758 | 2280 | 100 | Minus |
| 2R | 25286936 | 2R | 22225912..22226247 | 898..563 | 1680 | 100 | Minus |
| 2R | 25286936 | 2R | 22226625..22226941 | 333..17 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 22226315..22226548 | 565..332 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 22223803..22223979 | 2386..2210 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 22218774..22218876 | 2193..2091 | 215 | 80.6 | Minus |
| 2R | 25286936 | 2R | 22219377..22219583 | 1546..1340 | 210 | 73.4 | Minus |
| 2R | 25286936 | 2R | 22220468..22220571 | 493..390 | 190 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:50:48 has no hits.
BS17814.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:07 Download gff for
BS17814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RB | 517..2886 | 17..2386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:23 Download gff for
BS17814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 565..2934 | 17..2386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:31 Download gff for
BS17814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 561..2930 | 17..2386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:09 Download gff for
BS17814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 565..2934 | 17..2386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:09 Download gff for
BS17814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22223803..22223977 | 2212..2386 | 100 | <- | Minus |
| 2R | 22224032..22224483 | 1760..2211 | 100 | <- | Minus |
| 2R | 22224545..22225407 | 897..1759 | 100 | <- | Minus |
| 2R | 22225914..22226246 | 564..896 | 100 | <- | Minus |
| 2R | 22226317..22226546 | 334..563 | 100 | <- | Minus |
| 2R | 22226625..22226941 | 17..333 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:23 Download gff for
BS17814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18111308..18111482 | 2212..2386 | 100 | <- | Minus |
| arm_2R | 18111537..18111988 | 1760..2211 | 100 | <- | Minus |
| arm_2R | 18112050..18112912 | 897..1759 | 100 | <- | Minus |
| arm_2R | 18113419..18113751 | 564..896 | 100 | <- | Minus |
| arm_2R | 18113822..18114051 | 334..563 | 100 | <- | Minus |
| arm_2R | 18114130..18114446 | 17..333 | 100 | | Minus |
BS17814.3prime Sequence
845 bp (844 high quality bases) assembled on 2007-05-30
> BS17814.3prime
ATGGTCTAGAAAGCTTCTAAATCTCTGTATTCTTTTCGTTGTTGGCCTCC
TCCTCGTGCTGAACGATCTTCATCTCCACCTCCTTGACGTCCTCGTCGAA
GATTTTCAGATCCTTTGCGTAGTACCAGACCCCCAGATCGAAAATGGCTC
CAATGGCAATAAAGACAGCTGCGGTGAAGTTGAGAGTGTACCTCATGGAA
AGCGGATCGTAGAGCCAGCAGTTTCCCTTATTTGTGCAGGTCTTGCCCCA
CACCAAACAGACCCTATCGAAAACCCAGCCAAAGAATATAGGACTAGGAA
TAAAGGCCAGCATCGAGCACAGAGTCATTCCGAATCCCATGGCCGCCGTC
TTGTCCTTTTCCGGCACACAGCGCACGGAAACCAGGAAGTTCGAGGCTCT
GCCGCTGGCTCCCACGAACTTCAGGCAACACATCACGGCCAAAAAGGCCA
CAAATTGTGTCCAACAATTTACGGGACATGCGCCGGGCATTGCCTGTCCA
TTCGCTAGAGCCTCCAACTGACTATGAACCGAGGTGTTCTGGCTAACCTC
ATCGTTACTCAAATCGAAGCTGGTTAGGCGCTTAAATTGGCTCGTGGAAT
TACCAGCATCATCGCTAGGAATGCAGGAGCAATCGTAGAAGATCTTTTTT
CCTTCGGAGTTGACGAGCAACTTTTTGCACCCAGCGTGGCAGGCGGAGAT
GTAGGTCATGTTGTTCTCCCCGCATACCGGGGAATAGCGGACGTAGTCAC
AGGAGCAGGCCGAATTGCATGTGGTAGTGTTGCCAGCTAACGAGCTGTCG
TGAATATTGACGATCACGGAACTCTCATTTCCCGGACAGCCGATG
BS17814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3380-PA | 2370 | Oatp58Dc-RA | 1542..2370 | 845..17 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Dc-RC | 2794 | CG3380-RC | 1844..2672 | 845..17 | 4145 | 100 | Minus |
| Oatp58Dc-RB | 3014 | CG3380-RB | 2064..2892 | 845..17 | 4145 | 100 | Minus |
| Oatp58Dc-RA | 3056 | CG3380-RA | 2106..2934 | 845..17 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22224030..22224485 | 190..645 | 2280 | 100 | Plus |
| 2R | 25286936 | 2R | 22224545..22224746 | 644..845 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 22223803..22223979 | 17..193 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 22218774..22218876 | 210..312 | 215 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:57 has no hits.
BS17814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:10 Download gff for
BS17814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3380-PA | 1542..2370 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:05 Download gff for
BS17814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 2106..2938 | 12..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:25 Download gff for
BS17814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 2106..2938 | 12..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:25 Download gff for
BS17814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22223799..22223977 | 12..191 | 98 | <- | Plus |
| 2R | 22224032..22224483 | 192..643 | 100 | <- | Plus |
| 2R | 22224545..22224746 | 644..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:05 Download gff for
BS17814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18111304..18111482 | 12..191 | 98 | <- | Plus |
| arm_2R | 18111537..18111988 | 192..643 | 100 | <- | Plus |
| arm_2R | 18112050..18112251 | 644..845 | 100 | | Plus |
BS17814.5prime Sequence
874 bp (762 high quality bases) assembled on 2007-05-30
> BS17814.5prime
GAAGTTATCACTCTACATGGTGCAGAGCGAGAATCCCAGTAGCCTGGGAG
CCGAGCTGCAGGACTTGGAGCACGGAAGGCGGGAGTCCCGGGATGAATCC
GACGTCGAGTCCAGACTTCTGAACAATGGAAAGAGCTACGACAAGGAAAA
GGAGGCGGGCAATCAGGACGGTGAAGAGACCACTCCGAAGACAGGGAAAT
CTAAGAAGAAGAAACAGAAATCCGAGCAGGATCGTCTCATGACCGCGGAA
ATTAACAAGCTGCTGGCGGAATCCCCGCTGGAGAAGAATGTTACCTGCGG
CTTCTGGATATTCAAGGGAACGTTTTACCAAAGATTTGCCAATCAAACTG
CTTACGTTTTACTTTACGGAATCGTGGGCTGCATCTTTTCAATGACATAT
GCCTACTTTAACGGCACGATCACCACAATAGAGAAGCGCTTTAAGATACC
ATCGAAGAATACAGGCATTATCTCGGTGGGAAACGATATAAGTCAGACCT
TGGTGTCGGCGGTTTTGGCCTACTATGCGGGAAAGGGCCATCGGCCAAGA
TGGATTGGTTTTGGTCTTCTTACCATCGTATTTTTCTGCATTCTGACCAC
CGCACCGCACTTTCTCTACGGACCCGGCGAGGATGCACTTGCTCTGACCT
CGGAGTTCGGCGGGATGCCCGATGAAAATGCCACAATGGAGGCTATCGAG
GAGCAGCGATCCAAGACCCTATGCCGCTTGAATGGAGGAGGAGCGGAGTG
CGAGGTCGGTGAAGGAAACTTTGCGCCCCAACTTTTGCTCTTCGTAGCGC
AGTTCATATCTGGGATTGGAGGATCGCTATACTACACGTTGGGAGTGTCC
TACATGGACGATAATACTAAAAAA
BS17814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3380-PA | 2370 | Oatp58Dc-RA | 1..858 | 17..874 | 4265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Dc-RC | 2794 | CG3380-RC | 303..1160 | 17..874 | 4275 | 99.9 | Plus |
| Oatp58Dc-RB | 3014 | CG3380-RB | 523..1380 | 17..874 | 4275 | 99.9 | Plus |
| Oatp58Dc-RA | 3056 | CG3380-RA | 565..1422 | 17..874 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22226625..22226941 | 333..17 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 22225936..22226247 | 874..563 | 1545 | 99.7 | Minus |
| 2R | 25286936 | 2R | 22226315..22226548 | 565..332 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 22220468..22220571 | 493..390 | 190 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:50:01 has no hits.
BS17814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:15 Download gff for
BS17814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3380-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:14 Download gff for
BS17814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 557..1416 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:00 Download gff for
BS17814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Dc-RA | 557..1416 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:00 Download gff for
BS17814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22225942..22226246 | 564..868 | 99 | <- | Minus |
| 2R | 22226317..22226546 | 334..563 | 100 | <- | Minus |
| 2R | 22226625..22226949 | 9..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:14 Download gff for
BS17814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18113447..18113751 | 564..868 | 99 | <- | Minus |
| arm_2R | 18113822..18114051 | 334..563 | 100 | <- | Minus |
| arm_2R | 18114130..18114454 | 9..333 | 98 | | Minus |
BS17814.pep Sequence
Translation from 16 to 2385
> BS17814.pep
MVQSENPSSLGAELQDLEHGRRESRDESDVESRLLNNGKSYDKEKEAGNQ
DGEETTPKTGKSKKKKQKSEQDRLMTAEINKLLAESPLEKNVTCGFWIFK
GTFYQRFANQTAYVLLYGIVGCIFSMTYAYFNGTITTIEKRFKIPSKNTG
IISVGNDISQTLVSAVLAYYAGKGHRPRWIGFGLLTIVFFCILTTAPHFL
YGPGEDALALTSEFGGMPDENATMEAIEEQRSKTLCRLNGGGAECEVGEG
NFAPQLLLFVAQFISGIGGSLYYTLGVSYMDDNTKKSKTPALLSLSYFLR
MLGPAIGYALASFCLRLYIAPQMHPVINNKDPRWLGAWWLGWLVMGGLLS
FSGVFLSMFPKELPRAVARRKVEENRRREKERLSVKSTEKERLTAELDQK
TTAEAKASFQDMLKTFRRLITNKTYMCNTLSSIFYLVGYTPYWIFTPKYI
EVQYRQSAATSSMVTGTVALAFSAVGVLLSGFIISRYKPRARYMAAWNVI
VGFLTVAGILAYAFIGCPGNESSVIVNIHDSSLAGNTTTCNSACSCDYVR
YSPVCGENNMTYISACHAGCKKLLVNSEGKKIFYDCSCIPSDDAGNSTSQ
FKRLTSFDLSNDEVSQNTSVHSQLEALANGQAMPGACPVNCWTQFVAFLA
VMCCLKFVGASGRASNFLVSVRCVPEKDKTAAMGFGMTLCSMLAFIPSPI
FFGWVFDRVCLVWGKTCTNKGNCWLYDPLSMRYTLNFTAAVFIAIGAIFD
LGVWYYAKDLKIFDEDVKEVEMKIVQHEEEANNEKNTEI*
BS17814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Dc-PC | 789 | CG3380-PC | 1..789 | 1..789 | 4153 | 100 | Plus |
| Oatp58Dc-PB | 789 | CG3380-PB | 1..789 | 1..789 | 4153 | 100 | Plus |
| Oatp58Dc-PA | 789 | CG3380-PA | 1..789 | 1..789 | 4153 | 100 | Plus |
| Oatp58Da-PA | 684 | CG30277-PA | 45..684 | 90..780 | 1898 | 52.7 | Plus |
| Oatp58Db-PB | 680 | CG3382-PB | 13..675 | 68..789 | 1825 | 49.3 | Plus |
