Clone BS17818 Report

Search the DGRC for BS17818

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptMal-A5-RA
Protein status:BS17818.pep: full length peptide match
Sequenced Size:1925

Clone Sequence Records

BS17818.complete Sequence

1925 bp assembled on 2009-12-07

GenBank Submission: KX802767

> BS17818.complete
GAAGTTATCAGTCGACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCCCGAGGACTATGGCTATCTGCAGCACATC
TACACCAAGGATCAGCCGGAGACCATTGACCTGGTGTACTCGTGGCGAGC
TGTTCTGGATGCGCACCAGAGGGAGCACGGCGGGGAGGACCGCATCTTAA
TGGCCGAGACCTACTCACCCATAGATATCGTGATGCAGTATTACGGCAAT
GCGACGGCGGAGGGCGCTCAGCTGCCGTTCAACTTTCTGCTGATAAGCGA
GCTGTCCAACTCGTCGAATGCCCACGCCTACGAGGGAACAGTGCTCAAGT
GGCTGCAGCACATGCCCAAAGGTCGCACTGCCAACTGGGTGTTGGGTAAC
CACGATCAGCCCCGAGTGGGCTCCCGGCTGGGCAGGGATCGTGTGGACAT
GCTAAACATGCTCACTGCCACGCTGCCCGGCGCCAGTGTCACCTACCAGG
GCGAGGAGCTGGGCATGACCAATGTGTGGATCTCGTGGAAGGACACGGTG
GATCCATCGGCCTGCAACACCAATCCCAGCATCTATGAGCAGTACTCCCG
CGATCCGGAGCGAACGCCCTTCCAGTGGACTGATGCCCAGGACGCTGGGT
TCAGCAATGCCAGCAAGACCTGGCTGCCCATCGCCGTGGATTACAAGGAG
GTGAATGTGGAGCAGGAGCGGCAGAAGCCCCTTAGTCACCTGAACGTCTT
CAAACAGCTCTGGCAGTTAAGGAAGCAGTCCCAGACCCTTAAACGCGGCG
AAACTGAAGTGAAGGCCCTCAGCGACGCCGTTTTGGCCGTTAAACGGTAT
CTCGAGCGTGATTCAACGTACTTGACCCTTTTGAACATTTACGACGGAGT
AGAAACCATAAATTTGCTGCAGAGTTTCCCCGACTTGCCACCTCAACTCA
AAGTTGTGGTGGTCACAGAGCGATCTCAAGTCAAAGTGGGCGATCTCGTG
AACTCAACATCGCTGCAGCTCCAGCCCAAGGATTCGCTTGTCCTGCAGAC
CACCTCCTCGTATTATAGCTATGCCACAAACGGAGAAACTCGTTTTCTTC
CCGTGCTGGGGGTTTATCTATGGCTGGCTCAAGTGGGGCTCTATCTAAGC
AGCCGATGAAAGCTTTCTAGACCAT

BS17818.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RA 1893 CG30359-PA 1..1893 17..1909 9465 100 Plus
Mal-A5-RB 1605 CG30359-PB 1..1605 305..1909 8025 100 Plus
Mal-A5-RC 1836 CG30359-PC 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RA 2045 CG30359-RA 93..1985 17..1909 9465 100 Plus
Mal-A5-RB 2102 CG30359-RB 360..2042 227..1909 8415 100 Plus
Mal-A5-RC 1988 CG30359-RC 93..1526 17..1450 7170 100 Plus
Mal-A5-RB 2102 CG30359-RB 93..304 17..228 1060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8463112..8463573 227..688 2310 100 Plus
2R 25286936 2R 8464144..8464601 1141..1598 2290 100 Plus
2R 25286936 2R 8463631..8464083 689..1141 2265 100 Plus
2R 25286936 2R 8462845..8463056 17..228 1060 100 Plus
2R 25286936 2R 8464863..8465032 1740..1909 850 100 Plus
2R 25286936 2R 8464652..8464796 1596..1740 725 100 Plus
2R 25286936 2R 8457358..8457626 516..248 340 75.1 Minus
2R 25286936 2R 8473222..8473381 1223..1382 320 80 Plus
2R 25286936 2R 8465398..8465604 248..454 300 76.3 Plus
2R 25286936 2R 8458893..8459398 146..648 275 70.8 Plus
2R 25286936 2R 8453829..8454031 248..450 250 74.9 Plus
2R 25286936 2R 8471348..8471436 336..248 235 84.3 Minus
2R 25286936 2R 8472079..8472261 146..328 225 74.9 Plus
2R 25286936 2R 8456572..8456651 1302..1223 205 83.8 Minus
Blast to na_te.dros performed on 2014-11-28 01:54:31 has no hits.

BS17818.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:02 Download gff for BS17818.complete
Subject Subject Range Query Range Percent Splice Strand
CG30359-RA 73..1964 17..1908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:08 Download gff for BS17818.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 93..1984 17..1908 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:45 Download gff for BS17818.complete
Subject Subject Range Query Range Percent Splice Strand
CG30359-RA 73..1964 17..1908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:41 Download gff for BS17818.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 93..1984 17..1908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:41 Download gff for BS17818.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8462845..8463055 17..227 100 -> Plus
2R 8463113..8463573 228..688 100 -> Plus
2R 8463631..8464083 689..1141 100 -> Plus
2R 8464145..8464599 1142..1596 100 -> Plus
2R 8464653..8464796 1597..1740 100 -> Plus
2R 8464864..8465031 1741..1908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:08 Download gff for BS17818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4352369..4352536 1741..1908 100   Plus
arm_2R 4351136..4351588 689..1141 100 -> Plus
arm_2R 4351650..4352104 1142..1596 100 -> Plus
arm_2R 4350350..4350560 17..227 100 -> Plus
arm_2R 4350618..4351078 228..688 100 -> Plus
arm_2R 4352158..4352301 1597..1740 100 -> Plus

BS17818.3prime Sequence

900 bp (845 high quality bases) assembled on 2007-05-30

> BS17818.3prime
ATGGTCTAGAAAGCTTTCATCCCTTGCTTAGATAGAGCCCCACTTGAGCC
AGCCATAGATAAACCCCCAGCACGGGAAGAAAACGAGTTTCTCCGTTTGT
GGCATAGCTATAATACGAGGAGGTGGTCTGCAGGACAAGCGAATCCTTGG
GCTGGAGCTGCAGCGATGTTGAGTTCACGAGATCGCCCACTTTGACTTGA
GATCGCTCTGTGACCACCACAACTTTGAGTTGAGGTGGCAAGTCGGGGAA
ACTCTGCAGCAAATTTATGGTTTCTACTCCGTCGTAAATGTTCAAAAGGG
TCAAGTACGTTGAATCACGCTCGAGATACCGTTTAACGGCCAAAACGGCG
TCGCTGAGGGCCTTCACTTCAGTTTCGCCGCGTTTAAGGGTCTGGGACTG
CTTCCTTAACTGCCAGAGCTGTTTGAAGACGTTCAGGTGACTAAGGGGCT
TCTGCCGCTCCTGCTCCACATTCACCTCCTTGTAATCCACGGCGATGGGC
AGCCAGGTCTTGCTGGCATTGCTGAACCCAGCGTCCTGGGCATCAGTCCA
CTGGAAGGGCGTTCGCTCCGGATCGCGGGAGTACTGCTCATAGATGCTGG
GATTGGTGTTGCAGGCCGATGGATCCACCGTGTCCTTCCACGAGATCCAC
ACATTGGTCATGCCCAGCTCCTCGCCCTGGTAGGTGACACTGGCGCCGGG
CAGCGTGGCAGTGAGCATGTTTAGCATGTCCACACGATCCCTGCCCAGCC
GGGAGCCCACTCGGGGCTGATCGTGGTTACCCAACACCCAGTTGGCAGTG
CGACCTTTGGGCATGTGCTGCAGCCACTTGAGCACTGTTCCCTCGTAGGC
GTGGGCATTCGACGAGTTGGACAGCTCGCTTATCAGCAGAAAGTTGAACG

BS17818.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30359-PA 1893 CG30359-RA 1010..1885 900..25 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RB 2102 CG30359-RB 1159..2034 900..25 4380 100 Minus
Mal-A5-RA 2045 CG30359-RA 1102..1977 900..25 4380 100 Minus
Mal-A5-RC 1988 CG30359-RC 1102..1526 900..476 2125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8464144..8464601 785..328 2290 100 Minus
2R 25286936 2R 8464863..8465024 186..25 810 100 Minus
2R 25286936 2R 8464652..8464796 330..186 725 100 Minus
2R 25286936 2R 8463968..8464083 900..785 580 100 Minus
2R 25286936 2R 8473222..8473381 703..544 320 80 Minus
2R 25286936 2R 8456572..8456651 624..703 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-13 06:03:10 has no hits.

BS17818.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:36 Download gff for BS17818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30359-PA 1010..1893 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:09:35 Download gff for BS17818.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 1102..1985 17..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:24 Download gff for BS17818.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 1102..1985 17..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:24 Download gff for BS17818.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8463968..8464083 785..900 100 -> Minus
2R 8464145..8464599 330..784 100 -> Minus
2R 8464653..8464796 186..329 100 -> Minus
2R 8464864..8465032 17..185 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:09:35 Download gff for BS17818.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4351473..4351588 785..900 100 -> Minus
arm_2R 4351650..4352104 330..784 100 -> Minus
arm_2R 4352158..4352301 186..329 100 -> Minus
arm_2R 4352369..4352537 17..185 98   Minus

BS17818.5prime Sequence

822 bp (756 high quality bases) assembled on 2007-05-30

> BS17818.5prime
GAAGTTATCACTCTACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCC

BS17818.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30359-PA 1893 CG30359-RA 1..806 17..822 4030 100 Plus
CG30360-PB 1743 CG30360-RB 389..435 408..454 185 95.7 Plus
CG30360-PA 1821 CG30360-RA 389..435 408..454 185 95.7 Plus
CG14935-PA 1695 CG14935-RA 61..107 164..210 135 91.4 Plus
CG14935-PB 1752 CG14935-RB 118..164 164..210 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RC 1988 CG30359-RC 93..898 17..822 4030 100 Plus
Mal-A5-RA 2045 CG30359-RA 93..898 17..822 4030 100 Plus
Mal-A5-RB 2102 CG30359-RB 360..955 227..822 2980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8463112..8463573 227..688 2310 100 Plus
2R 25286936 2R 8462845..8463056 17..228 1060 100 Plus
2R 25286936 2R 8463631..8463764 689..822 670 100 Plus
2R 25286936 2R 8457358..8457626 516..248 340 75.1 Minus
2R 25286936 2R 8465398..8465604 248..454 300 76.3 Plus
2R 25286936 2R 8458893..8459398 146..648 275 70.8 Plus
2R 25286936 2R 8453829..8454031 248..450 250 74.9 Plus
2R 25286936 2R 8471348..8471436 336..248 235 84.3 Minus
2R 25286936 2R 8472079..8472261 146..328 225 74.9 Plus
Blast to na_te.dros performed on 2015-02-13 07:14:18 has no hits.

BS17818.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:41 Download gff for BS17818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30359-PA 1..806 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:03 Download gff for BS17818.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 93..898 17..822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:00 Download gff for BS17818.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 93..898 17..822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:00 Download gff for BS17818.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8462845..8463055 17..227 100 -> Plus
2R 8463113..8463573 228..688 100 -> Plus
2R 8463631..8463764 689..822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:03 Download gff for BS17818.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4350350..4350560 17..227 100 -> Plus
arm_2R 4350618..4351078 228..688 100 -> Plus
arm_2R 4351136..4351269 689..822 100   Plus

BS17818.pep Sequence

Translation from 16 to 1908

> BS17818.pep
MIKYRLIAFLAVLLQLHCPTLGQPYPNYHADFVGIGDHGADLKWWQTAAF
YQIYPRSFKDSNGDGVGDLNGIAEQLPYLKELGITATWLSPIFTSPMADF
GYDIANFTEIAPIFGTMADFEHLMEVAKKLDIKIILDFVPNHSSDECEWF
RRSAARDPEFKDFYVWHPGRMENGNRHPPSNWISVFRGSAWQWHEGRQEF
YLHQFVKKQPDLNYRNPKVRETMSNVLRFWLGKGVAGFRIDAVPHVFEIA
PDNQNQYRDEPRNDWDNDPEDYGYLQHIYTKDQPETIDLVYSWRAVLDAH
QREHGGEDRILMAETYSPIDIVMQYYGNATAEGAQLPFNFLLISELSNSS
NAHAYEGTVLKWLQHMPKGRTANWVLGNHDQPRVGSRLGRDRVDMLNMLT
ATLPGASVTYQGEELGMTNVWISWKDTVDPSACNTNPSIYEQYSRDPERT
PFQWTDAQDAGFSNASKTWLPIAVDYKEVNVEQERQKPLSHLNVFKQLWQ
LRKQSQTLKRGETEVKALSDAVLAVKRYLERDSTYLTLLNIYDGVETINL
LQSFPDLPPQLKVVVVTERSQVKVGDLVNSTSLQLQPKDSLVLQTTSSYY
SYATNGETRFLPVLGVYLWLAQVGLYLSSR*

BS17818.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-PA 630 CG30359-PA 1..630 1..630 3389 100 Plus
Mal-A5-PC 611 CG30359-PC 1..611 1..630 3262 97 Plus
Mal-A5-PB 534 CG30359-PB 1..534 97..630 2863 100 Plus
Mal-A4-PA 579 CG8693-PA 24..578 44..598 1899 61 Plus
Mal-A3-PA 574 CG8695-PA 19..573 40..595 1872 62.1 Plus