Clone Sequence Records
BS17818.complete Sequence
1925 bp assembled on 2009-12-07
GenBank Submission: KX802767
> BS17818.complete
GAAGTTATCAGTCGACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCCCGAGGACTATGGCTATCTGCAGCACATC
TACACCAAGGATCAGCCGGAGACCATTGACCTGGTGTACTCGTGGCGAGC
TGTTCTGGATGCGCACCAGAGGGAGCACGGCGGGGAGGACCGCATCTTAA
TGGCCGAGACCTACTCACCCATAGATATCGTGATGCAGTATTACGGCAAT
GCGACGGCGGAGGGCGCTCAGCTGCCGTTCAACTTTCTGCTGATAAGCGA
GCTGTCCAACTCGTCGAATGCCCACGCCTACGAGGGAACAGTGCTCAAGT
GGCTGCAGCACATGCCCAAAGGTCGCACTGCCAACTGGGTGTTGGGTAAC
CACGATCAGCCCCGAGTGGGCTCCCGGCTGGGCAGGGATCGTGTGGACAT
GCTAAACATGCTCACTGCCACGCTGCCCGGCGCCAGTGTCACCTACCAGG
GCGAGGAGCTGGGCATGACCAATGTGTGGATCTCGTGGAAGGACACGGTG
GATCCATCGGCCTGCAACACCAATCCCAGCATCTATGAGCAGTACTCCCG
CGATCCGGAGCGAACGCCCTTCCAGTGGACTGATGCCCAGGACGCTGGGT
TCAGCAATGCCAGCAAGACCTGGCTGCCCATCGCCGTGGATTACAAGGAG
GTGAATGTGGAGCAGGAGCGGCAGAAGCCCCTTAGTCACCTGAACGTCTT
CAAACAGCTCTGGCAGTTAAGGAAGCAGTCCCAGACCCTTAAACGCGGCG
AAACTGAAGTGAAGGCCCTCAGCGACGCCGTTTTGGCCGTTAAACGGTAT
CTCGAGCGTGATTCAACGTACTTGACCCTTTTGAACATTTACGACGGAGT
AGAAACCATAAATTTGCTGCAGAGTTTCCCCGACTTGCCACCTCAACTCA
AAGTTGTGGTGGTCACAGAGCGATCTCAAGTCAAAGTGGGCGATCTCGTG
AACTCAACATCGCTGCAGCTCCAGCCCAAGGATTCGCTTGTCCTGCAGAC
CACCTCCTCGTATTATAGCTATGCCACAAACGGAGAAACTCGTTTTCTTC
CCGTGCTGGGGGTTTATCTATGGCTGGCTCAAGTGGGGCTCTATCTAAGC
AGCCGATGAAAGCTTTCTAGACCAT
BS17818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RA | 1893 | CG30359-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Mal-A5-RB | 1605 | CG30359-PB | 1..1605 | 305..1909 | 8025 | 100 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RA | 2045 | CG30359-RA | 93..1985 | 17..1909 | 9465 | 100 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 360..2042 | 227..1909 | 8415 | 100 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 93..1526 | 17..1450 | 7170 | 100 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 93..304 | 17..228 | 1060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8463112..8463573 | 227..688 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 8464144..8464601 | 1141..1598 | 2290 | 100 | Plus |
2R | 25286936 | 2R | 8463631..8464083 | 689..1141 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 8462845..8463056 | 17..228 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 8464863..8465032 | 1740..1909 | 850 | 100 | Plus |
2R | 25286936 | 2R | 8464652..8464796 | 1596..1740 | 725 | 100 | Plus |
2R | 25286936 | 2R | 8457358..8457626 | 516..248 | 340 | 75.1 | Minus |
2R | 25286936 | 2R | 8473222..8473381 | 1223..1382 | 320 | 80 | Plus |
2R | 25286936 | 2R | 8465398..8465604 | 248..454 | 300 | 76.3 | Plus |
2R | 25286936 | 2R | 8458893..8459398 | 146..648 | 275 | 70.8 | Plus |
2R | 25286936 | 2R | 8453829..8454031 | 248..450 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8471348..8471436 | 336..248 | 235 | 84.3 | Minus |
2R | 25286936 | 2R | 8472079..8472261 | 146..328 | 225 | 74.9 | Plus |
2R | 25286936 | 2R | 8456572..8456651 | 1302..1223 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:54:31 has no hits.
BS17818.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:02 Download gff for
BS17818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-RA | 73..1964 | 17..1908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:08 Download gff for
BS17818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 93..1984 | 17..1908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:45 Download gff for
BS17818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-RA | 73..1964 | 17..1908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:41 Download gff for
BS17818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 93..1984 | 17..1908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:41 Download gff for
BS17818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8462845..8463055 | 17..227 | 100 | -> | Plus |
2R | 8463113..8463573 | 228..688 | 100 | -> | Plus |
2R | 8463631..8464083 | 689..1141 | 100 | -> | Plus |
2R | 8464145..8464599 | 1142..1596 | 100 | -> | Plus |
2R | 8464653..8464796 | 1597..1740 | 100 | -> | Plus |
2R | 8464864..8465031 | 1741..1908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:08 Download gff for
BS17818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4352369..4352536 | 1741..1908 | 100 | | Plus |
arm_2R | 4351136..4351588 | 689..1141 | 100 | -> | Plus |
arm_2R | 4351650..4352104 | 1142..1596 | 100 | -> | Plus |
arm_2R | 4350350..4350560 | 17..227 | 100 | -> | Plus |
arm_2R | 4350618..4351078 | 228..688 | 100 | -> | Plus |
arm_2R | 4352158..4352301 | 1597..1740 | 100 | -> | Plus |
BS17818.3prime Sequence
900 bp (845 high quality bases) assembled on 2007-05-30
> BS17818.3prime
ATGGTCTAGAAAGCTTTCATCCCTTGCTTAGATAGAGCCCCACTTGAGCC
AGCCATAGATAAACCCCCAGCACGGGAAGAAAACGAGTTTCTCCGTTTGT
GGCATAGCTATAATACGAGGAGGTGGTCTGCAGGACAAGCGAATCCTTGG
GCTGGAGCTGCAGCGATGTTGAGTTCACGAGATCGCCCACTTTGACTTGA
GATCGCTCTGTGACCACCACAACTTTGAGTTGAGGTGGCAAGTCGGGGAA
ACTCTGCAGCAAATTTATGGTTTCTACTCCGTCGTAAATGTTCAAAAGGG
TCAAGTACGTTGAATCACGCTCGAGATACCGTTTAACGGCCAAAACGGCG
TCGCTGAGGGCCTTCACTTCAGTTTCGCCGCGTTTAAGGGTCTGGGACTG
CTTCCTTAACTGCCAGAGCTGTTTGAAGACGTTCAGGTGACTAAGGGGCT
TCTGCCGCTCCTGCTCCACATTCACCTCCTTGTAATCCACGGCGATGGGC
AGCCAGGTCTTGCTGGCATTGCTGAACCCAGCGTCCTGGGCATCAGTCCA
CTGGAAGGGCGTTCGCTCCGGATCGCGGGAGTACTGCTCATAGATGCTGG
GATTGGTGTTGCAGGCCGATGGATCCACCGTGTCCTTCCACGAGATCCAC
ACATTGGTCATGCCCAGCTCCTCGCCCTGGTAGGTGACACTGGCGCCGGG
CAGCGTGGCAGTGAGCATGTTTAGCATGTCCACACGATCCCTGCCCAGCC
GGGAGCCCACTCGGGGCTGATCGTGGTTACCCAACACCCAGTTGGCAGTG
CGACCTTTGGGCATGTGCTGCAGCCACTTGAGCACTGTTCCCTCGTAGGC
GTGGGCATTCGACGAGTTGGACAGCTCGCTTATCAGCAGAAAGTTGAACG
BS17818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30359-PA | 1893 | CG30359-RA | 1010..1885 | 900..25 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RB | 2102 | CG30359-RB | 1159..2034 | 900..25 | 4380 | 100 | Minus |
Mal-A5-RA | 2045 | CG30359-RA | 1102..1977 | 900..25 | 4380 | 100 | Minus |
Mal-A5-RC | 1988 | CG30359-RC | 1102..1526 | 900..476 | 2125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8464144..8464601 | 785..328 | 2290 | 100 | Minus |
2R | 25286936 | 2R | 8464863..8465024 | 186..25 | 810 | 100 | Minus |
2R | 25286936 | 2R | 8464652..8464796 | 330..186 | 725 | 100 | Minus |
2R | 25286936 | 2R | 8463968..8464083 | 900..785 | 580 | 100 | Minus |
2R | 25286936 | 2R | 8473222..8473381 | 703..544 | 320 | 80 | Minus |
2R | 25286936 | 2R | 8456572..8456651 | 624..703 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:03:10 has no hits.
BS17818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:36 Download gff for
BS17818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-PA | 1010..1893 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:09:35 Download gff for
BS17818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 1102..1985 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:24 Download gff for
BS17818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 1102..1985 | 17..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:24 Download gff for
BS17818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8463968..8464083 | 785..900 | 100 | -> | Minus |
2R | 8464145..8464599 | 330..784 | 100 | -> | Minus |
2R | 8464653..8464796 | 186..329 | 100 | -> | Minus |
2R | 8464864..8465032 | 17..185 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:09:35 Download gff for
BS17818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4351473..4351588 | 785..900 | 100 | -> | Minus |
arm_2R | 4351650..4352104 | 330..784 | 100 | -> | Minus |
arm_2R | 4352158..4352301 | 186..329 | 100 | -> | Minus |
arm_2R | 4352369..4352537 | 17..185 | 98 | | Minus |
BS17818.5prime Sequence
822 bp (756 high quality bases) assembled on 2007-05-30
> BS17818.5prime
GAAGTTATCACTCTACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCC
BS17818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30359-PA | 1893 | CG30359-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
CG30360-PB | 1743 | CG30360-RB | 389..435 | 408..454 | 185 | 95.7 | Plus |
CG30360-PA | 1821 | CG30360-RA | 389..435 | 408..454 | 185 | 95.7 | Plus |
CG14935-PA | 1695 | CG14935-RA | 61..107 | 164..210 | 135 | 91.4 | Plus |
CG14935-PB | 1752 | CG14935-RB | 118..164 | 164..210 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RC | 1988 | CG30359-RC | 93..898 | 17..822 | 4030 | 100 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 93..898 | 17..822 | 4030 | 100 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 360..955 | 227..822 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8463112..8463573 | 227..688 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 8462845..8463056 | 17..228 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 8463631..8463764 | 689..822 | 670 | 100 | Plus |
2R | 25286936 | 2R | 8457358..8457626 | 516..248 | 340 | 75.1 | Minus |
2R | 25286936 | 2R | 8465398..8465604 | 248..454 | 300 | 76.3 | Plus |
2R | 25286936 | 2R | 8458893..8459398 | 146..648 | 275 | 70.8 | Plus |
2R | 25286936 | 2R | 8453829..8454031 | 248..450 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8471348..8471436 | 336..248 | 235 | 84.3 | Minus |
2R | 25286936 | 2R | 8472079..8472261 | 146..328 | 225 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:14:18 has no hits.
BS17818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:41 Download gff for
BS17818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-PA | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:03 Download gff for
BS17818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 93..898 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:00 Download gff for
BS17818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 93..898 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:00 Download gff for
BS17818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8462845..8463055 | 17..227 | 100 | -> | Plus |
2R | 8463113..8463573 | 228..688 | 100 | -> | Plus |
2R | 8463631..8463764 | 689..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:03 Download gff for
BS17818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4350350..4350560 | 17..227 | 100 | -> | Plus |
arm_2R | 4350618..4351078 | 228..688 | 100 | -> | Plus |
arm_2R | 4351136..4351269 | 689..822 | 100 | | Plus |
BS17818.pep Sequence
Translation from 16 to 1908
> BS17818.pep
MIKYRLIAFLAVLLQLHCPTLGQPYPNYHADFVGIGDHGADLKWWQTAAF
YQIYPRSFKDSNGDGVGDLNGIAEQLPYLKELGITATWLSPIFTSPMADF
GYDIANFTEIAPIFGTMADFEHLMEVAKKLDIKIILDFVPNHSSDECEWF
RRSAARDPEFKDFYVWHPGRMENGNRHPPSNWISVFRGSAWQWHEGRQEF
YLHQFVKKQPDLNYRNPKVRETMSNVLRFWLGKGVAGFRIDAVPHVFEIA
PDNQNQYRDEPRNDWDNDPEDYGYLQHIYTKDQPETIDLVYSWRAVLDAH
QREHGGEDRILMAETYSPIDIVMQYYGNATAEGAQLPFNFLLISELSNSS
NAHAYEGTVLKWLQHMPKGRTANWVLGNHDQPRVGSRLGRDRVDMLNMLT
ATLPGASVTYQGEELGMTNVWISWKDTVDPSACNTNPSIYEQYSRDPERT
PFQWTDAQDAGFSNASKTWLPIAVDYKEVNVEQERQKPLSHLNVFKQLWQ
LRKQSQTLKRGETEVKALSDAVLAVKRYLERDSTYLTLLNIYDGVETINL
LQSFPDLPPQLKVVVVTERSQVKVGDLVNSTSLQLQPKDSLVLQTTSSYY
SYATNGETRFLPVLGVYLWLAQVGLYLSSR*
BS17818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-PA | 630 | CG30359-PA | 1..630 | 1..630 | 3389 | 100 | Plus |
Mal-A5-PC | 611 | CG30359-PC | 1..611 | 1..630 | 3262 | 97 | Plus |
Mal-A5-PB | 534 | CG30359-PB | 1..534 | 97..630 | 2863 | 100 | Plus |
Mal-A4-PA | 579 | CG8693-PA | 24..578 | 44..598 | 1899 | 61 | Plus |
Mal-A3-PA | 574 | CG8695-PA | 19..573 | 40..595 | 1872 | 62.1 | Plus |