Clone Sequence Records
BS17820.3prime Sequence
876 bp (808 high quality bases) assembled on 2007-05-30
> BS17820.3prime
ATGGTCTAGAAAGCTTCTATCCATTGGAGTGTTTGCTTGTGGGCGCCTTT
TCTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGA
ATCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTG
CCAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCC
TCGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCAT
TGCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGC
CCACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCT
ATGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATC
TTCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGC
TTGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCA
TAAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGC
CAGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACA
GGCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAG
TTGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCAC
CAGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTT
TTAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGC
AGATCGGCGAAGAGAATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTT
AGCCAGCTTCATGTTGACTTGGTCGC
BS17820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 347..1198 | 876..25 | 4260 | 100 | Minus |
CG5725-PB | 1254 | fbl-RB | 395..1246 | 876..25 | 4260 | 100 | Minus |
CG5725-PA | 1260 | fbl-RA | 401..1252 | 876..25 | 4260 | 100 | Minus |
CG5725-PC | 1206 | fbl-RC | 347..1198 | 876..25 | 4260 | 100 | Minus |
CG5725-PE | 1539 | fbl-RE | 680..1531 | 876..25 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 762..1621 | 876..17 | 4270 | 99.8 | Minus |
fbl-RF | 1370 | CG5725-RF | 239..1098 | 876..17 | 4270 | 99.8 | Minus |
fbl-RE | 2386 | CG5725-RE | 796..1655 | 876..17 | 4270 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391182 | 314..17 | 1460 | 99.3 | Minus |
3L | 28110227 | 3L | 20390456..20390634 | 628..450 | 895 | 100 | Minus |
3L | 28110227 | 3L | 20390688..20390827 | 451..312 | 700 | 100 | Minus |
3L | 28110227 | 3L | 20390268..20390393 | 752..627 | 630 | 100 | Minus |
3L | 28110227 | 3L | 20390085..20390208 | 876..753 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:16:35 has no hits.
BS17820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:56 Download gff for
BS17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PE | 680..1539 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:27 Download gff for
BS17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 796..1660 | 12..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:37 Download gff for
BS17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 796..1660 | 12..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:37 Download gff for
BS17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390085..20390208 | 753..876 | 100 | -> | Minus |
3L | 20390268..20390393 | 627..752 | 100 | -> | Minus |
3L | 20390458..20390634 | 450..626 | 100 | -> | Minus |
3L | 20390690..20390825 | 314..449 | 100 | -> | Minus |
3L | 20390886..20391187 | 12..313 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:27 Download gff for
BS17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383185..20383308 | 753..876 | 100 | -> | Minus |
arm_3L | 20383368..20383493 | 627..752 | 100 | -> | Minus |
arm_3L | 20383558..20383734 | 450..626 | 100 | -> | Minus |
arm_3L | 20383790..20383925 | 314..449 | 100 | -> | Minus |
arm_3L | 20383986..20384287 | 12..313 | 98 | | Minus |
BS17820.5prime Sequence
914 bp (837 high quality bases) assembled on 2007-05-30
> BS17820.5prime
GAAGTTATCACTCTACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTTCCGTATCACGCGAAGATCTGG
GCCACGCCCACTCT
BS17820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PA | 1260 | fbl-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
CG5725-PB | 1254 | fbl-RB | 46..856 | 68..878 | 4055 | 100 | Plus |
CG5725-PE | 1539 | fbl-RE | 332..1141 | 69..878 | 4050 | 100 | Plus |
CG5725-PD | 1206 | fbl-RD | 1..808 | 71..878 | 4040 | 100 | Plus |
CG5725-PC | 1206 | fbl-RC | 1..808 | 71..878 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RA | 1866 | CG5725-RA | 335..1230 | 17..914 | 4410 | 99.6 | Plus |
fbl-RG | 2352 | CG5725-RG | 412..1257 | 67..914 | 4160 | 99.5 | Plus |
fbl-RB | 1910 | CG5725-RB | 426..1274 | 64..914 | 4160 | 99.4 | Plus |
fbl-RG | 2352 | CG5725-RG | 335..386 | 17..68 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 245..540 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 20388668..20388847 | 68..247 | 900 | 100 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 665..843 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 541..666 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20387950..20388001 | 17..68 | 260 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390753 | 842..908 | 255 | 95.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:45:48 has no hits.
BS17820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:00 Download gff for
BS17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PA | 1..896 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:23 Download gff for
BS17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 327..1230 | 4..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:28 Download gff for
BS17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 327..1230 | 4..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:28 Download gff for
BS17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20387942..20388001 | 4..68 | 92 | -> | Plus |
3L | 20390268..20390393 | 541..666 | 100 | -> | Plus |
3L | 20390458..20390634 | 667..843 | 100 | -> | Plus |
3L | 20390690..20390758 | 844..914 | 94 | | Plus |
3L | 20388669..20388847 | 69..247 | 100 | -> | Plus |
3L | 20389916..20390208 | 248..540 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:23 Download gff for
BS17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381042..20381101 | 4..68 | 92 | -> | Plus |
arm_3L | 20381769..20381947 | 69..247 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 248..540 | 100 | -> | Plus |
arm_3L | 20383368..20383493 | 541..666 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 667..843 | 100 | -> | Plus |
arm_3L | 20383790..20383858 | 844..914 | 94 | | Plus |
BS17820.complete Sequence
1292 bp assembled on 2010-01-09
GenBank Submission: KX801604
> BS17820.complete
GAAGTTATCAGTCGACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGC
CAACGCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGA
TGTGCGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTT
CTGCGAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTT
CTGGTCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACT
TTGGGGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCC
CTTAACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAG
CGAAGCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGC
CCACAAGCAAACACTCCACTAGATAGAAGCTTTCTAGACCAT
BS17820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RA | 1260 | CG5725-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
fbl-RG | 1287 | CG5725-PG | 78..1287 | 67..1276 | 6050 | 100 | Plus |
fbl-RB | 1254 | CG5725-PB | 42..1254 | 64..1276 | 6050 | 99.9 | Plus |
fbl-RG | 1287 | CG5725-PG | 1..52 | 17..68 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RA | 1866 | CG5725-RA | 335..1594 | 17..1276 | 6300 | 100 | Plus |
fbl-RG | 2352 | CG5725-RG | 412..1621 | 67..1276 | 6050 | 100 | Plus |
fbl-RB | 1910 | CG5725-RB | 426..1638 | 64..1276 | 6050 | 99.9 | Plus |
fbl-RG | 2352 | CG5725-RG | 335..386 | 17..68 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391182 | 979..1276 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 20389913..20390208 | 245..540 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 20388668..20388847 | 68..247 | 900 | 100 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 665..843 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390827 | 842..981 | 700 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 541..666 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20387950..20388001 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:55:01 has no hits.
BS17820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:33 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:04 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 335..1594 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:18 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 335..1594 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:34 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 331..1599 | 9..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:42 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 335..1594 | 17..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:42 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390458..20390634 | 667..843 | 100 | -> | Plus |
3L | 20390690..20390825 | 844..979 | 100 | -> | Plus |
3L | 20387950..20388001 | 17..68 | 100 | -> | Plus |
3L | 20388669..20388847 | 69..247 | 100 | -> | Plus |
3L | 20389916..20390208 | 248..540 | 100 | -> | Plus |
3L | 20390268..20390393 | 541..666 | 100 | -> | Plus |
3L | 20390886..20391182 | 980..1276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:18 Download gff for
BS17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383790..20383925 | 844..979 | 100 | -> | Plus |
arm_3L | 20381769..20381947 | 69..247 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 248..540 | 100 | -> | Plus |
arm_3L | 20381050..20381101 | 17..68 | 100 | -> | Plus |
arm_3L | 20383368..20383493 | 541..666 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 667..843 | 100 | -> | Plus |
arm_3L | 20383986..20384282 | 980..1276 | 100 | | Plus |
BS17820.pep Sequence
Translation from 16 to 1275
> BS17820.pep
MPEALHFTSIFDLIIKSAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREA
GILRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDM
GNFLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTL
IKGILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVS
ILAVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRK
VDKLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLV
TITNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGT
MKGLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQT
SSTADEPPEKAPTSKHSTR*
BS17820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-PA | 419 | CG5725-PA | 1..419 | 1..419 | 2182 | 100 | Plus |
fbl-PG | 428 | CG5725-PG | 1..428 | 1..419 | 2162 | 97.9 | Plus |
fbl-PB | 417 | CG5725-PB | 16..417 | 18..419 | 2097 | 100 | Plus |
fbl-PC | 401 | CG5725-PC | 1..401 | 19..419 | 2093 | 100 | Plus |
fbl-PD | 401 | CG5725-PD | 1..401 | 19..419 | 2093 | 100 | Plus |