Clone BS17820 Report

Search the DGRC for BS17820

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptfbl-RA
Protein status:BS17820.pep: full length peptide match
Sequenced Size:1292

Clone Sequence Records

BS17820.3prime Sequence

876 bp (808 high quality bases) assembled on 2007-05-30

> BS17820.3prime
ATGGTCTAGAAAGCTTCTATCCATTGGAGTGTTTGCTTGTGGGCGCCTTT
TCTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGA
ATCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTG
CCAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCC
TCGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCAT
TGCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGC
CCACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCT
ATGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATC
TTCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGC
TTGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCA
TAAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGC
CAGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACA
GGCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAG
TTGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCAC
CAGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTT
TTAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGC
AGATCGGCGAAGAGAATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTT
AGCCAGCTTCATGTTGACTTGGTCGC

BS17820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 347..1198 876..25 4260 100 Minus
CG5725-PB 1254 fbl-RB 395..1246 876..25 4260 100 Minus
CG5725-PA 1260 fbl-RA 401..1252 876..25 4260 100 Minus
CG5725-PC 1206 fbl-RC 347..1198 876..25 4260 100 Minus
CG5725-PE 1539 fbl-RE 680..1531 876..25 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 762..1621 876..17 4270 99.8 Minus
fbl-RF 1370 CG5725-RF 239..1098 876..17 4270 99.8 Minus
fbl-RE 2386 CG5725-RE 796..1655 876..17 4270 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391182 314..17 1460 99.3 Minus
3L 28110227 3L 20390456..20390634 628..450 895 100 Minus
3L 28110227 3L 20390688..20390827 451..312 700 100 Minus
3L 28110227 3L 20390268..20390393 752..627 630 100 Minus
3L 28110227 3L 20390085..20390208 876..753 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:16:35 has no hits.

BS17820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:56 Download gff for BS17820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PE 680..1539 17..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:27 Download gff for BS17820.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 796..1660 12..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:37 Download gff for BS17820.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 796..1660 12..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:37 Download gff for BS17820.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20390085..20390208 753..876 100 -> Minus
3L 20390268..20390393 627..752 100 -> Minus
3L 20390458..20390634 450..626 100 -> Minus
3L 20390690..20390825 314..449 100 -> Minus
3L 20390886..20391187 12..313 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:27 Download gff for BS17820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383185..20383308 753..876 100 -> Minus
arm_3L 20383368..20383493 627..752 100 -> Minus
arm_3L 20383558..20383734 450..626 100 -> Minus
arm_3L 20383790..20383925 314..449 100 -> Minus
arm_3L 20383986..20384287 12..313 98   Minus

BS17820.5prime Sequence

914 bp (837 high quality bases) assembled on 2007-05-30

> BS17820.5prime
GAAGTTATCACTCTACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTTCCGTATCACGCGAAGATCTGG
GCCACGCCCACTCT

BS17820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PA 1260 fbl-RA 1..862 17..878 4310 100 Plus
CG5725-PB 1254 fbl-RB 46..856 68..878 4055 100 Plus
CG5725-PE 1539 fbl-RE 332..1141 69..878 4050 100 Plus
CG5725-PD 1206 fbl-RD 1..808 71..878 4040 100 Plus
CG5725-PC 1206 fbl-RC 1..808 71..878 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RA 1866 CG5725-RA 335..1230 17..914 4410 99.6 Plus
fbl-RG 2352 CG5725-RG 412..1257 67..914 4160 99.5 Plus
fbl-RB 1910 CG5725-RB 426..1274 64..914 4160 99.4 Plus
fbl-RG 2352 CG5725-RG 335..386 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 245..540 1480 100 Plus
3L 28110227 3L 20388668..20388847 68..247 900 100 Plus
3L 28110227 3L 20390456..20390634 665..843 895 100 Plus
3L 28110227 3L 20390268..20390393 541..666 630 100 Plus
3L 28110227 3L 20387950..20388001 17..68 260 100 Plus
3L 28110227 3L 20390688..20390753 842..908 255 95.5 Plus
Blast to na_te.dros performed on 2015-02-13 06:45:48 has no hits.

BS17820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:00 Download gff for BS17820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PA 1..896 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:23 Download gff for BS17820.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 327..1230 4..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:28 Download gff for BS17820.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 327..1230 4..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:28 Download gff for BS17820.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20387942..20388001 4..68 92 -> Plus
3L 20390268..20390393 541..666 100 -> Plus
3L 20390458..20390634 667..843 100 -> Plus
3L 20390690..20390758 844..914 94   Plus
3L 20388669..20388847 69..247 100 -> Plus
3L 20389916..20390208 248..540 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:23 Download gff for BS17820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381042..20381101 4..68 92 -> Plus
arm_3L 20381769..20381947 69..247 100 -> Plus
arm_3L 20383016..20383308 248..540 100 -> Plus
arm_3L 20383368..20383493 541..666 100 -> Plus
arm_3L 20383558..20383734 667..843 100 -> Plus
arm_3L 20383790..20383858 844..914 94   Plus

BS17820.complete Sequence

1292 bp assembled on 2010-01-09

GenBank Submission: KX801604

> BS17820.complete
GAAGTTATCAGTCGACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGC
CAACGCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGA
TGTGCGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTT
CTGCGAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTT
CTGGTCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACT
TTGGGGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCC
CTTAACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAG
CGAAGCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGC
CCACAAGCAAACACTCCACTAGATAGAAGCTTTCTAGACCAT

BS17820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RA 1260 CG5725-PA 1..1260 17..1276 6300 100 Plus
fbl-RG 1287 CG5725-PG 78..1287 67..1276 6050 100 Plus
fbl-RB 1254 CG5725-PB 42..1254 64..1276 6050 99.9 Plus
fbl-RG 1287 CG5725-PG 1..52 17..68 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RA 1866 CG5725-RA 335..1594 17..1276 6300 100 Plus
fbl-RG 2352 CG5725-RG 412..1621 67..1276 6050 100 Plus
fbl-RB 1910 CG5725-RB 426..1638 64..1276 6050 99.9 Plus
fbl-RG 2352 CG5725-RG 335..386 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391182 979..1276 1490 100 Plus
3L 28110227 3L 20389913..20390208 245..540 1480 100 Plus
3L 28110227 3L 20388668..20388847 68..247 900 100 Plus
3L 28110227 3L 20390456..20390634 665..843 895 100 Plus
3L 28110227 3L 20390688..20390827 842..981 700 100 Plus
3L 28110227 3L 20390268..20390393 541..666 630 100 Plus
3L 28110227 3L 20387950..20388001 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:55:01 has no hits.

BS17820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:33 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:04 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 335..1594 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:18 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 335..1594 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:34 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 331..1599 9..1281 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:42 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 335..1594 17..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:42 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20390458..20390634 667..843 100 -> Plus
3L 20390690..20390825 844..979 100 -> Plus
3L 20387950..20388001 17..68 100 -> Plus
3L 20388669..20388847 69..247 100 -> Plus
3L 20389916..20390208 248..540 100 -> Plus
3L 20390268..20390393 541..666 100 -> Plus
3L 20390886..20391182 980..1276 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:18 Download gff for BS17820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383790..20383925 844..979 100 -> Plus
arm_3L 20381769..20381947 69..247 100 -> Plus
arm_3L 20383016..20383308 248..540 100 -> Plus
arm_3L 20381050..20381101 17..68 100 -> Plus
arm_3L 20383368..20383493 541..666 100 -> Plus
arm_3L 20383558..20383734 667..843 100 -> Plus
arm_3L 20383986..20384282 980..1276 100   Plus

BS17820.pep Sequence

Translation from 16 to 1275

> BS17820.pep
MPEALHFTSIFDLIIKSAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREA
GILRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDM
GNFLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTL
IKGILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVS
ILAVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRK
VDKLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLV
TITNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGT
MKGLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQT
SSTADEPPEKAPTSKHSTR*

BS17820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PA 419 CG5725-PA 1..419 1..419 2182 100 Plus
fbl-PG 428 CG5725-PG 1..428 1..419 2162 97.9 Plus
fbl-PB 417 CG5725-PB 16..417 18..419 2097 100 Plus
fbl-PC 401 CG5725-PC 1..401 19..419 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 19..419 2093 100 Plus