Clone Sequence Records
BS17824.3prime Sequence
858 bp (828 high quality bases) assembled on 2007-05-30
> BS17824.3prime
ATGGTCTAGAAAGCTTTCACCTATCCTCAGTCTTCAAGGTGATTTCATAT
ATCAGCTCGTCGTTGTAGTCCTGCCCTCGGCCATGATGCTGCTGATGCTG
CTGGTGATGCTGTTGGACAGCGTTAAAGTACTGATCCTCGGTTAGCAGCT
CATCTAAATCCTCACCGCCATCCTCTGCGTCCACTGCGTTCTCCACCAGC
AGGTGCTGGTCATCGTAATCCGATAGCTGCACATACTGTTGCTCGCTCTC
GTCCAAATATTGGCGATTGGACGGCGAACCCTGCTCCTCTGGTTGATTGT
CCTCAACCAACAGGCCGTCATCCTCGTCGTACTCCTCCTGCAGTGGGCCC
ATGCCGTCGTAATCGTCGTCCTGGCCATTCATATTGCGACCGGAAATGGA
TTCCGAATCGGATCCTTCACGATTCCCATCCGCATTCACAAAGCGACGCG
TATTGCTACGGCACTGAATCGAACGCTTGTGGGCATCGAAGTAGCTGATG
TCGGTGAACTCCTCCTGGCACAAATGGCACACGTATGTGCCCTGGCTCAG
ATGCATCTCCTTACGATGACGGGCCATCTTGTGAGCATCGCGACACTGCA
TGCCACAGAATGGGCATTTGAGCATCCGCCGCTTGCCCATGTGAACATTG
CGGATGTGCTCCTGCAGAGAGAAATTCTTGTAGTAGGCCTTCTGGCAGTA
CTCGCACTGGAATCGCCGCTTCTTCTCGTGCGTCGCCTCGCGATGCCGCT
TCAGCTGGGTATTCTGGGCGAACGTCTTGCCGCACACTTCGCAAATATGC
TCCTTCTCCAGATGTCGGCGCTGATTGTGCACGCGCAGATCCTGCTTGGT
CGAAAAGT
BS17824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-PA | 1797 | CG2116-RA | 956..1792 | 858..22 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-RA | 1972 | CG2116-RA | 1063..1899 | 858..22 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8130874..8131710 | 858..22 | 4185 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2377 | 115..84 | 124 | 87.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1638 | 115..15 | 120 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2386 | 115..84 | 115 | 84.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6851..6882 | 115..84 | 115 | 84.4 | Minus |
BS17824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:13 Download gff for
BS17824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-PA | 956..1797 | 17..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:38 Download gff for
BS17824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 1063..1908 | 13..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:45 Download gff for
BS17824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 1063..1908 | 13..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:45 Download gff for
BS17824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8130874..8131719 | 13..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:38 Download gff for
BS17824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8024907..8025752 | 13..858 | 99 | | Minus |
BS17824.5prime Sequence
827 bp (763 high quality bases) assembled on 2007-05-30
> BS17824.5prime
GAAGTTATCACTCGACATGAGCCACAAACGCTGCCTTGCGAACGAGGTAA
TCGAATTCGTCCTGCCGGCCAATAGCGATTACTCGGACGAAGACAACCGT
GGAAACGTTCGTGTGATTAACACTAGCGATGATGCCACCTACGTGCTTCT
GGACAACCTGGGCAACGAGTTCGAAGAGGACATCATCATCGTCAATGAGA
ACGGCGTGGAGAAGGAGATGCTGATGAGCAAGGAGCTGCGCGACTTTATA
GTGGGCTCCCGGGTGAAGGATTTGACGGATGACGAACAGATGCCGCAATT
TGTGGTCAGGGAATTGGATATGAGCGAAGTGGGGGATTTGGTGGAGGTGG
AACCGGAGATGGAACAGGAGGCGGACTATGGCGACTACGGCGACTACGAG
CACGAACCTAGCTACGGCCATCCGCGCGATAACGAAAGGGTGGAAGAGGA
TCTGGATATGTATCCACCGTCGTCACCCTCGCTGCCACCATCGCCACCAA
GGCCGCCGTCGCCTGTTGTCCAGCCCGCTAGCAAAGCTAGAAATTCTGCC
CGCCAGATCGCCTTACGTAGCTTTGTCAGCCAAAAAAACAACGACGACGA
TGATGGTAGCGTGAAGGAGGTGAAGCCAAGCGAAAAGATGCTGGAGGAGT
TCAAGGGACCGCGTCGCTACATGCTTTTCGACGACCTGATAGCCACCATT
GTGGACTTTGACGAGGATAGCACACCCCTTGTGGAGTTCTCCATGATCAG
CGACATCATGGACGAGAAGCTGCCGGTGGAGTGCGGCATTTGCCCAGATG
TGATGCACAAATCAAAGCTGTTCAAGC
BS17824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-PA | 1797 | CG2116-RA | 1..811 | 17..827 | 4030 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-RA | 1972 | CG2116-RA | 108..918 | 17..827 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8129919..8130729 | 17..827 | 4040 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-10 22:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 659..757 | 458..555 | 132 | 60.6 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 982..1040 | 467..528 | 113 | 71.4 | Plus |
BS17824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:15 Download gff for
BS17824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:10 Download gff for
BS17824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 102..918 | 10..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:01 Download gff for
BS17824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 102..918 | 10..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:01 Download gff for
BS17824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8129913..8130729 | 10..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:10 Download gff for
BS17824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8023946..8024762 | 10..827 | 99 | | Plus |
BS17824.complete Sequence
1829 bp assembled on 2008-08-15
GenBank Submission: KX801109
> BS17824.complete
GAAGTTATCACTCGACATGAGCCACAAACGCTGCCTTGCGAACGAGGTAA
TCGAATTCGTCCTGCCGGCCAATAGCGATTACTCGGACGAAGACAACCGT
GGAAACGTTCGTGTGATTAACACTAGCGATGATGCCACCTACGTGCTTCT
GGACAACCTGGGCAACGAGTTCGAAGAGGACATCATCATCGTCAATGAGA
ACGGCGTGGAGAAGGAGATGCTGATGAGCAAGGAGCTGCGCGACTTTATA
GTGGGCTCCCGGGTGAAGGATTTGACGGATGACGAACAGATGCCGCAATT
TGTGGTCAGGGAATTGGATATGAGCGAAGTGGGGGATTTGGTGGAGGTGG
AACCGGAGATGGAACAGGAGGCGGACTATGGCGACTACGGCGACTACGAG
CACGAACCTAGCTACGGCCATCCGCGCGATAACGAAAGGGTGGAAGAGGA
TCTGGATATGTATCCACCGTCGTCACCCTCGCTGCCACCATCGCCACCAA
GGCCGCCGTCGCCTGTTGTCCAGCCCGCTAGCAAAGCTAGAAATTCTGCC
CGCCAGATCGCCTTACGTAGCTTTGTCAGCCAAAAAAACAACGACGACGA
TGATGGTAGCGTGAAGGAGGTGAAGCCAAGCGAAAAGATGCTGGAGGAGT
TCAAGGGACCGCGTCGCTACATGCTTTTCGACGACCTGATAGCCACCATT
GTGGACTTTGACGAGGATAGCACACCCCTTGTGGAGTTCTCCATGATCAG
CGACATCATGGACGAGAAGCTGCCGGTGGAGTGCGGCATTTGCCCAGATG
TGATGCACAAATCAAAGCTGTCCAAGCACCACAAGACCCATCTGGTGCCT
GGCACCAATCGCTATGCTTGCATTTACTGCACGGAAACGTATCGCGACTG
CAAGTACCTGGCCGGACATGCGCGGCGCCACATGGGCATCCGTCCATACG
TCTGCGAACTGTGCACCCTATACTTTTCGACCAAGCAGGATCTGCGCGTG
CACAATCAGCGCCGACATCTGGAGAAGGAGCATATTTGCGAAGTGTGCGG
CAAGACGTTCGCCCAGAATACCCAGCTGAAGCGGCATCGCGAGGCGACGC
ACGAGAAGAAGCGGCGATTCCAGTGCGAGTACTGCCAGAAGGCCTACTAC
AAGAATTTCTCTCTGCAGGAGCACATCCGCAATGTTCACATGGGCAAGCG
GCGGATGCTCAAATGCCCATTCTGTGGCATGCAGTGTCGCGATGCTCACA
AGATGGCCCGTCATCGTAAGGAGATGCATCTGAGCCAGGGCACATACGTG
TGCCATTTGTGCCAGGAGGAGTTCACCGACATCAGCTACTTCGATGCCCA
CAAGCGTTCGATTCAGTGCCGTAGCAATACGCGTCGCTTTGTGAATGCGG
ATGGGAATCGTGAAGGATCCGATTCGGAATCCATTTCCGGTCGCAATATG
AATGGCCAGGACGACGATTACGACGGCATGGGCCCACTGCAGGAGGAGTA
CGACGAGGATGACGGCCTGTTGGTTGAGGACAATCAACCAGAGGAGCAGG
GTTCGCCGTCCAATCGCCAATATTTGGACGAGAGCGAGCAACAGTATGTG
CAGCTATCGGATTACGATGACCAGCACCTGCTGGTGGAGAACGCAGTGGA
CGCAGAGGATGGCGGTGAGGATTTAGATGAGCTGCTAACCGAGGATCAGT
ACTTTAACGCTGTCCAACAGCATCACCAGCAGCATCAGCAGCATCATGGC
CGAGGGCAGGACTACAACGACGAGCTGATATATGAAATCACCTTGAAGAC
TGAGGATAACTGAAAGCTTTCTAGACCAT
BS17824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-RA | 1797 | CG2116-PA | 1..1797 | 17..1813 | 8985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-RA | 1972 | CG2116-RA | 108..1904 | 17..1813 | 8985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8129919..8131715 | 17..1813 | 8985 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 659..757 | 458..555 | 132 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2377 | 1715..1746 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1638 | 1715..1815 | 120 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2386 | 1715..1746 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6851..6882 | 1715..1746 | 115 | 84.4 | Plus |
BS17824.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:40:27 Download gff for
BS17824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 187..1989 | 10..1813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:00:35 Download gff for
BS17824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 108..1903 | 17..1812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:17 Download gff for
BS17824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 193..1988 | 17..1812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:09 Download gff for
BS17824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 108..1903 | 17..1812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:09 Download gff for
BS17824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8129919..8131714 | 17..1812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:35 Download gff for
BS17824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8023952..8025747 | 17..1812 | 100 | | Plus |
BS17824.pep Sequence
Translation from 16 to 1812
> BS17824.pep
MSHKRCLANEVIEFVLPANSDYSDEDNRGNVRVINTSDDATYVLLDNLGN
EFEEDIIIVNENGVEKEMLMSKELRDFIVGSRVKDLTDDEQMPQFVVREL
DMSEVGDLVEVEPEMEQEADYGDYGDYEHEPSYGHPRDNERVEEDLDMYP
PSSPSLPPSPPRPPSPVVQPASKARNSARQIALRSFVSQKNNDDDDGSVK
EVKPSEKMLEEFKGPRRYMLFDDLIATIVDFDEDSTPLVEFSMISDIMDE
KLPVECGICPDVMHKSKLSKHHKTHLVPGTNRYACIYCTETYRDCKYLAG
HARRHMGIRPYVCELCTLYFSTKQDLRVHNQRRHLEKEHICEVCGKTFAQ
NTQLKRHREATHEKKRRFQCEYCQKAYYKNFSLQEHIRNVHMGKRRMLKC
PFCGMQCRDAHKMARHRKEMHLSQGTYVCHLCQEEFTDISYFDAHKRSIQ
CRSNTRRFVNADGNREGSDSESISGRNMNGQDDDYDGMGPLQEEYDEDDG
LLVEDNQPEEQGSPSNRQYLDESEQQYVQLSDYDDQHLLVENAVDAEDGG
EDLDELLTEDQYFNAVQQHHQQHQQHHGRGQDYNDELIYEITLKTEDN*
BS17824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-PA | 598 | CG2116-PA | 1..598 | 1..598 | 3227 | 100 | Plus |
| dwg-PA | 592 | CG2711-PA | 251..493 | 196..447 | 263 | 27.8 | Plus |
| pita-PB | 623 | CG3941-PB | 281..563 | 253..548 | 260 | 26.5 | Plus |
| pita-PA | 683 | CG3941-PA | 341..623 | 253..548 | 260 | 26.5 | Plus |
| CG3407-PA | 714 | CG3407-PA | 363..656 | 113..418 | 259 | 25.2 | Plus |
| dwg-PA | 592 | CG2711-PA | 385..521 | 250..388 | 183 | 32.1 | Plus |
| dwg-PA | 592 | CG2711-PA | 304..438 | 310..448 | 163 | 30.9 | Plus |
