Clone Sequence Records
BS17827.3prime Sequence
851 bp (826 high quality bases) assembled on 2007-05-30
> BS17827.3prime
ATGGTCTAGAAAGCTTTTAGCTCTTCTGAGGCTGTTGCTCGGCGACAATG
TCCTTGCCGGAGTTTCGTCCATAGTATCCGTTGTAGGCCGCCTCCTGCGG
ATCCCCGAAGCTGACGGAGTTGCCGCCAACCTGCTGGCCCTGGACCTGCT
GGCCCTGGTAGCTCTTGCTGTAGTAGTCGGTGTAGGGCTTGGCAAAGCTT
GGCTCCTGGCGGTAGTAAGGTCCTGGAGCGCCTCCATGGCCGCCCTCAAA
GTGCTCGTGGTGGTGGTAGTAGGTGGCAGCTCCCACTCCCTGGGGGTTGT
ACTCGGGGAAGGTGTTCTTGCCGCCAAACAGGCCCGACAGTCCACCGCCG
AATGCTCCTCCAACACCACCTGGCGGACGGCACAGCTTGAAGTAGGCGAA
CAGACCGGGCAGGACAATAGCGGCCAATCCAAGGATCTTCTTGAGGCCAG
CGATTCCAAGGATGAAGGGCAGGAAGAGCAGCAACTTCAGCTTGAAGATC
TTCAGCACCAGCAGCAGGGGAATGATCATCTTCTTCAACTTCTTACGCGA
GAAATGTCCAGCCCGCTGTCCATCATCAATGAGGTCCAGTTCGCCATCAA
TGTCGTTTCCGATGAAGCGTGCTTCATAACGACCGGCTTCGGTGAGTTCC
TCGGGCCACTCGACCTCTAGAGCCGTGGACTTGATGAAGCGTTCGGCCCT
TCGGAGTCCATATTTCAGCAGCTGATTCCACTCGTCGTCGTCGCCACGTG
GCTCCTCGGAGTACTCGAATGGCTCCTGCAGCAAGGACCTCTGCTGGGTT
TCTGGCAGTCGCACCACACGAGCAAAGTCGGAGAGCTTGTACTGGTCCTT
G
BS17827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1148-PB | 1173 | Osi2-RB | 339..1173 | 851..17 | 4175 | 100 | Minus |
CG1148-PA | 1173 | Osi2-RA | 339..1173 | 851..17 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1391 | CG1148-RC | 445..1279 | 851..17 | 4175 | 100 | Minus |
Osi2-RA | 1474 | CG1148-RA | 528..1362 | 851..17 | 4175 | 100 | Minus |
Osi2-RB | 1449 | CG1148-RB | 503..1337 | 851..17 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6212849..6213381 | 549..17 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 6212093..6212239 | 836..690 | 735 | 100 | Minus |
3R | 32079331 | 3R | 6212388..6212528 | 690..550 | 705 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2971 | 462..516 | 113 | 67.3 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 1302..1334 | 755..724 | 108 | 84.8 | Minus |
BS17827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:37 Download gff for
BS17827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1148-PA | 339..1173 | 17..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:03 Download gff for
BS17827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 503..1340 | 11..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:15 Download gff for
BS17827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 503..1340 | 11..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:15 Download gff for
BS17827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6212093..6212239 | 690..836 | 100 | -> | Minus |
3R | 6212389..6212528 | 550..689 | 100 | -> | Minus |
3R | 6212849..6213384 | 11..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:03 Download gff for
BS17827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2037815..2037961 | 690..836 | 100 | -> | Minus |
arm_3R | 2038111..2038250 | 550..689 | 100 | -> | Minus |
arm_3R | 2038571..2039106 | 11..549 | 99 | | Minus |
BS17827.5prime Sequence
899 bp (764 high quality bases) assembled on 2007-05-30
> BS17827.5prime
GAAGTTATCACTCTACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAGATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGGCCG
GTCTGTTCGCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGTGTTGGAGGA
GCATTCGGCGGTGGACTGTCGGGCCTGTTTGCCGGCAAGAACACTTCCC
BS17827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1148-PB | 1173 | Osi2-RB | 1..878 | 17..894 | 4340 | 99.7 | Plus |
CG1148-PA | 1173 | Osi2-RA | 1..878 | 17..894 | 4340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1391 | CG1148-RC | 106..990 | 16..899 | 4370 | 99.7 | Plus |
Osi2-RA | 1474 | CG1148-RA | 189..1073 | 16..899 | 4370 | 99.7 | Plus |
Osi2-RB | 1449 | CG1148-RB | 164..1048 | 16..899 | 4370 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6211461..6211815 | 16..370 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 6212849..6213086 | 657..894 | 1160 | 99.2 | Plus |
3R | 32079331 | 3R | 6212093..6212239 | 370..516 | 735 | 100 | Plus |
3R | 32079331 | 3R | 6212388..6212528 | 516..656 | 705 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 07:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2517 | 85..289 | 168 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..3025 | 99..348 | 161 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6886 | 100..193 | 160 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6865 | 100..190 | 144 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6833 | 87..191 | 139 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 100..191 | 135 | 64.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1150 | 124..193 | 134 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2393 | 110..193 | 132 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6585 | 151..204 | 125 | 74.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 87..191 | 120 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6934 | 77..211 | 119 | 57.7 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2234..2272 | 157..197 | 119 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2469 | 140..301 | 118 | 54.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3330 | 121..191 | 114 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2971 | 744..690 | 113 | 67.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6796 | 124..193 | 109 | 64.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1111 | 148..200 | 109 | 69.8 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 1302..1334 | 451..482 | 108 | 84.8 | Plus |
BS17827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:43 Download gff for
BS17827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1148-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:07 Download gff for
BS17827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 164..1048 | 16..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:23 Download gff for
BS17827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 164..1048 | 16..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:23 Download gff for
BS17827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6211457..6211814 | 9..369 | 98 | -> | Plus |
3R | 6212093..6212239 | 370..516 | 100 | -> | Plus |
3R | 6212389..6212528 | 517..656 | 100 | -> | Plus |
3R | 6212849..6213092 | 657..899 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:07 Download gff for
BS17827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2037179..2037536 | 9..369 | 98 | -> | Plus |
arm_3R | 2037815..2037961 | 370..516 | 100 | -> | Plus |
arm_3R | 2038111..2038250 | 517..656 | 100 | -> | Plus |
arm_3R | 2038571..2038814 | 657..899 | 98 | | Plus |
BS17827.complete Sequence
1205 bp assembled on 2009-12-07
GenBank Submission: KX804706
> BS17827.complete
GAAGTTATCAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAGATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGCCCG
GTCTGTTCGCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGTGTTGGAGGA
GCATTCGGCGGTGGACTGTCGGGCCTGTTTGGCGGCAAGAACACCTTCCC
CGAGTACAACCCCCAGGGAGTGGGAGCTGCCACCTACTACCACCACCACG
AGCACTTTGAGGGCGGCCATGGAGGCGCTCCAGGACCTTACTACCGCCAG
GAGCCAAGCTTTGCCAAGCCCTACACCGACTACTACAGCAAGAGCTACCA
GGGCCAGCAGGTCCAGGGCCAGCAGGTTGGCGGCAACTCCGTCAGCTTCG
GGGATCCGCAGGAGGCGGCCTACAACGGATACTATGGACGAAACTCCGGC
AAGGACATTGTCGCCGAGCAACAGCCTCAGAAGAGCTAAAAGCTTTCTAG
ACCAT
BS17827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1173 | CG1148-PC | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Osi2-RA | 1173 | CG1148-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Osi2-RB | 1173 | CG1148-PB | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1391 | CG1148-RC | 106..1279 | 16..1189 | 5870 | 100 | Plus |
Osi2-RA | 1474 | CG1148-RA | 189..1362 | 16..1189 | 5870 | 100 | Plus |
Osi2-RB | 1449 | CG1148-RB | 164..1337 | 16..1189 | 5870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6212849..6213381 | 657..1189 | 2665 | 100 | Plus |
3R | 32079331 | 3R | 6211461..6211815 | 16..370 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 6212093..6212239 | 370..516 | 735 | 100 | Plus |
3R | 32079331 | 3R | 6212388..6212528 | 516..656 | 705 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2517 | 85..289 | 168 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6886 | 100..193 | 160 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6865 | 100..190 | 144 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6833 | 87..191 | 139 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 100..191 | 135 | 64.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1150 | 124..193 | 134 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2393 | 110..193 | 132 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6585 | 151..204 | 125 | 74.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 87..191 | 120 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6934 | 77..211 | 119 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2469 | 140..301 | 118 | 54.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3330 | 121..191 | 114 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2971 | 744..690 | 113 | 67.3 | Minus |
BS17827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:35 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:57 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RA | 190..1360 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:41 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 165..1335 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:35 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RA | 180..1365 | 7..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:12 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 165..1335 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:12 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6211462..6211814 | 17..369 | 100 | -> | Plus |
3R | 6212093..6212239 | 370..516 | 100 | -> | Plus |
3R | 6212389..6212528 | 517..656 | 100 | -> | Plus |
3R | 6212849..6213379 | 657..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:41 Download gff for
BS17827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2037184..2037536 | 17..369 | 100 | -> | Plus |
arm_3R | 2037815..2037961 | 370..516 | 100 | -> | Plus |
arm_3R | 2038111..2038250 | 517..656 | 100 | -> | Plus |
arm_3R | 2038571..2039101 | 657..1187 | 100 | | Plus |
BS17827.pep Sequence
Translation from 16 to 1188
> BS17827.pep
MAMRALIFLALATLVAGEGLRLPDQQSSNNIQQVYAPQPPAQQIQQPQQQ
QQFPQAQQPGVGEERGRSSLLSIFGLGNDNDPFLARTNSNCLGGDLSECF
KTQALNTFDEIFFKDQYKLSDFARVVRLPETQQRSLLQEPFEYSEEPRGD
DDEWNQLLKYGLRRAERFIKSTALEVEWPEELTEAGRYEARFIGNDIDGE
LDLIDDGQRAGHFSRKKLKKMIIPLLLVLKIFKLKLLLFLPFILGIAGLK
KILGLAAIVLPGLFAYFKLCRPPGGVGGAFGGGLSGLFGGKNTFPEYNPQ
GVGAATYYHHHEHFEGGHGGAPGPYYRQEPSFAKPYTDYYSKSYQGQQVQ
GQQVGGNSVSFGDPQEAAYNGYYGRNSGKDIVAEQQPQKS*
BS17827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-PC | 390 | CG1148-PC | 1..390 | 1..390 | 2057 | 100 | Plus |
Osi2-PA | 390 | CG1148-PA | 1..390 | 1..390 | 2057 | 100 | Plus |
Osi2-PB | 390 | CG1148-PB | 1..390 | 1..390 | 2057 | 100 | Plus |