Clone BS17827 Report

Search the DGRC for BS17827

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptOsi2-RA
Protein status:BS17827.pep: full length peptide match
Sequenced Size:1205

Clone Sequence Records

BS17827.3prime Sequence

851 bp (826 high quality bases) assembled on 2007-05-30

> BS17827.3prime
ATGGTCTAGAAAGCTTTTAGCTCTTCTGAGGCTGTTGCTCGGCGACAATG
TCCTTGCCGGAGTTTCGTCCATAGTATCCGTTGTAGGCCGCCTCCTGCGG
ATCCCCGAAGCTGACGGAGTTGCCGCCAACCTGCTGGCCCTGGACCTGCT
GGCCCTGGTAGCTCTTGCTGTAGTAGTCGGTGTAGGGCTTGGCAAAGCTT
GGCTCCTGGCGGTAGTAAGGTCCTGGAGCGCCTCCATGGCCGCCCTCAAA
GTGCTCGTGGTGGTGGTAGTAGGTGGCAGCTCCCACTCCCTGGGGGTTGT
ACTCGGGGAAGGTGTTCTTGCCGCCAAACAGGCCCGACAGTCCACCGCCG
AATGCTCCTCCAACACCACCTGGCGGACGGCACAGCTTGAAGTAGGCGAA
CAGACCGGGCAGGACAATAGCGGCCAATCCAAGGATCTTCTTGAGGCCAG
CGATTCCAAGGATGAAGGGCAGGAAGAGCAGCAACTTCAGCTTGAAGATC
TTCAGCACCAGCAGCAGGGGAATGATCATCTTCTTCAACTTCTTACGCGA
GAAATGTCCAGCCCGCTGTCCATCATCAATGAGGTCCAGTTCGCCATCAA
TGTCGTTTCCGATGAAGCGTGCTTCATAACGACCGGCTTCGGTGAGTTCC
TCGGGCCACTCGACCTCTAGAGCCGTGGACTTGATGAAGCGTTCGGCCCT
TCGGAGTCCATATTTCAGCAGCTGATTCCACTCGTCGTCGTCGCCACGTG
GCTCCTCGGAGTACTCGAATGGCTCCTGCAGCAAGGACCTCTGCTGGGTT
TCTGGCAGTCGCACCACACGAGCAAAGTCGGAGAGCTTGTACTGGTCCTT
G

BS17827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1148-PB 1173 Osi2-RB 339..1173 851..17 4175 100 Minus
CG1148-PA 1173 Osi2-RA 339..1173 851..17 4175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1391 CG1148-RC 445..1279 851..17 4175 100 Minus
Osi2-RA 1474 CG1148-RA 528..1362 851..17 4175 100 Minus
Osi2-RB 1449 CG1148-RB 503..1337 851..17 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6212849..6213381 549..17 2665 100 Minus
3R 32079331 3R 6212093..6212239 836..690 735 100 Minus
3R 32079331 3R 6212388..6212528 690..550 705 100 Minus
Blast to na_te.dros performed 2015-02-12 04:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2917..2971 462..516 113 67.3 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 1302..1334 755..724 108 84.8 Minus

BS17827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:37 Download gff for BS17827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1148-PA 339..1173 17..851 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:03 Download gff for BS17827.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 503..1340 11..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:15 Download gff for BS17827.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 503..1340 11..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:15 Download gff for BS17827.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6212093..6212239 690..836 100 -> Minus
3R 6212389..6212528 550..689 100 -> Minus
3R 6212849..6213384 11..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:03 Download gff for BS17827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2037815..2037961 690..836 100 -> Minus
arm_3R 2038111..2038250 550..689 100 -> Minus
arm_3R 2038571..2039106 11..549 99   Minus

BS17827.5prime Sequence

899 bp (764 high quality bases) assembled on 2007-05-30

> BS17827.5prime
GAAGTTATCACTCTACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAGATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGGCCG
GTCTGTTCGCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGTGTTGGAGGA
GCATTCGGCGGTGGACTGTCGGGCCTGTTTGCCGGCAAGAACACTTCCC

BS17827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1148-PB 1173 Osi2-RB 1..878 17..894 4340 99.7 Plus
CG1148-PA 1173 Osi2-RA 1..878 17..894 4340 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1391 CG1148-RC 106..990 16..899 4370 99.7 Plus
Osi2-RA 1474 CG1148-RA 189..1073 16..899 4370 99.7 Plus
Osi2-RB 1449 CG1148-RB 164..1048 16..899 4370 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6211461..6211815 16..370 1775 100 Plus
3R 32079331 3R 6212849..6213086 657..894 1160 99.2 Plus
3R 32079331 3R 6212093..6212239 370..516 735 100 Plus
3R 32079331 3R 6212388..6212528 516..656 705 100 Plus
Blast to na_te.dros performed 2015-02-13 07:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2517 85..289 168 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..3025 99..348 161 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6886 100..193 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6865 100..190 144 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6833 87..191 139 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6815 100..191 135 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1150 124..193 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2393 110..193 132 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6585 151..204 125 74.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1160 87..191 120 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6934 77..211 119 57.7 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2234..2272 157..197 119 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2469 140..301 118 54.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3259..3330 121..191 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2917..2971 744..690 113 67.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6796 124..193 109 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1060..1111 148..200 109 69.8 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 1302..1334 451..482 108 84.8 Plus

BS17827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:43 Download gff for BS17827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1148-PA 1..884 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:07 Download gff for BS17827.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 164..1048 16..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:23 Download gff for BS17827.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 164..1048 16..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:23 Download gff for BS17827.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6211457..6211814 9..369 98 -> Plus
3R 6212093..6212239 370..516 100 -> Plus
3R 6212389..6212528 517..656 100 -> Plus
3R 6212849..6213092 657..899 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:07 Download gff for BS17827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2037179..2037536 9..369 98 -> Plus
arm_3R 2037815..2037961 370..516 100 -> Plus
arm_3R 2038111..2038250 517..656 100 -> Plus
arm_3R 2038571..2038814 657..899 98   Plus

BS17827.complete Sequence

1205 bp assembled on 2009-12-07

GenBank Submission: KX804706

> BS17827.complete
GAAGTTATCAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAGATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGCCCG
GTCTGTTCGCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGTGTTGGAGGA
GCATTCGGCGGTGGACTGTCGGGCCTGTTTGGCGGCAAGAACACCTTCCC
CGAGTACAACCCCCAGGGAGTGGGAGCTGCCACCTACTACCACCACCACG
AGCACTTTGAGGGCGGCCATGGAGGCGCTCCAGGACCTTACTACCGCCAG
GAGCCAAGCTTTGCCAAGCCCTACACCGACTACTACAGCAAGAGCTACCA
GGGCCAGCAGGTCCAGGGCCAGCAGGTTGGCGGCAACTCCGTCAGCTTCG
GGGATCCGCAGGAGGCGGCCTACAACGGATACTATGGACGAAACTCCGGC
AAGGACATTGTCGCCGAGCAACAGCCTCAGAAGAGCTAAAAGCTTTCTAG
ACCAT

BS17827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1173 CG1148-PC 1..1173 17..1189 5865 100 Plus
Osi2-RA 1173 CG1148-PA 1..1173 17..1189 5865 100 Plus
Osi2-RB 1173 CG1148-PB 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1391 CG1148-RC 106..1279 16..1189 5870 100 Plus
Osi2-RA 1474 CG1148-RA 189..1362 16..1189 5870 100 Plus
Osi2-RB 1449 CG1148-RB 164..1337 16..1189 5870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6212849..6213381 657..1189 2665 100 Plus
3R 32079331 3R 6211461..6211815 16..370 1775 100 Plus
3R 32079331 3R 6212093..6212239 370..516 735 100 Plus
3R 32079331 3R 6212388..6212528 516..656 705 100 Plus
Blast to na_te.dros performed 2014-11-28 01:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2517 85..289 168 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6886 100..193 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6865 100..190 144 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6833 87..191 139 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6815 100..191 135 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1150 124..193 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2393 110..193 132 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6585 151..204 125 74.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1160 87..191 120 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6934 77..211 119 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2469 140..301 118 54.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3259..3330 121..191 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2917..2971 744..690 113 67.3 Minus

BS17827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:35 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RA 1..1173 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:57 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RA 190..1360 17..1187 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:41 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 165..1335 17..1187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:35 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RA 180..1365 7..1195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:12 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 165..1335 17..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:12 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6211462..6211814 17..369 100 -> Plus
3R 6212093..6212239 370..516 100 -> Plus
3R 6212389..6212528 517..656 100 -> Plus
3R 6212849..6213379 657..1187 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:41 Download gff for BS17827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2037184..2037536 17..369 100 -> Plus
arm_3R 2037815..2037961 370..516 100 -> Plus
arm_3R 2038111..2038250 517..656 100 -> Plus
arm_3R 2038571..2039101 657..1187 100   Plus

BS17827.pep Sequence

Translation from 16 to 1188

> BS17827.pep
MAMRALIFLALATLVAGEGLRLPDQQSSNNIQQVYAPQPPAQQIQQPQQQ
QQFPQAQQPGVGEERGRSSLLSIFGLGNDNDPFLARTNSNCLGGDLSECF
KTQALNTFDEIFFKDQYKLSDFARVVRLPETQQRSLLQEPFEYSEEPRGD
DDEWNQLLKYGLRRAERFIKSTALEVEWPEELTEAGRYEARFIGNDIDGE
LDLIDDGQRAGHFSRKKLKKMIIPLLLVLKIFKLKLLLFLPFILGIAGLK
KILGLAAIVLPGLFAYFKLCRPPGGVGGAFGGGLSGLFGGKNTFPEYNPQ
GVGAATYYHHHEHFEGGHGGAPGPYYRQEPSFAKPYTDYYSKSYQGQQVQ
GQQVGGNSVSFGDPQEAAYNGYYGRNSGKDIVAEQQPQKS*

BS17827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-PC 390 CG1148-PC 1..390 1..390 2057 100 Plus
Osi2-PA 390 CG1148-PA 1..390 1..390 2057 100 Plus
Osi2-PB 390 CG1148-PB 1..390 1..390 2057 100 Plus