Clone Sequence Records
BS17828.3prime Sequence
887 bp (883 high quality bases) assembled on 2007-05-30
> BS17828.3prime
ATGGTCTAGAAAGCTTCTATACCTTACTGCTCTCCGCGCCATTTTGTCGT
GGCGGAGAAATCTGGGACTTGTCGTATCCATTGCTGGACATCTGCAGATG
CTGCGGAAGTTGGGCAGGACGTCCGTTGGAGGGCAAGGTCTCGTCCACGG
AGAACACGGAGTTGTCGTGTCCGTGCATGTGGCGAGCATTGAGCACGGCA
TCCGGATGGCTCTTCGGCGACTCCGGCTGTCCCACCTCATCAGGCTTGCC
TTCCAGCAGGAAACAGGTGATGAAGAAGAGAATAGAACTGATGCCGTAGA
ATCCAGCGTAGAAGATCATGATCGAACCGCGATAGCCCAGGATCTTGGCC
ACCGGATCCACCAGGATGGGCAGGTTGCCGCCAATGTTGTTCATCACAAA
CAGAAAGACGCCAATGGTCGAGGAGCGAACGCGCAGCGGAACAATCTCCA
CAACAATGGCAAAGACAATACCGAACCACATCTCGGCGAAGAAATAACTC
AGGCCCAGCGTGATCATGGCCCACAGCGGGTCAAAGTAGACCGATCCGAA
GGCTGGTAGTGTGGCAATTAGCTGGCTAACAGCCAATACAAAGGCGCGTG
ATCGAATGCCCATCTTGGCGACAATCTTGTCCGACACAATGCCACCGACG
ACCACACCCACGCTGCCAATGCCAATGGTGACCCCAAAGAGCCACCAGCC
CAAGTCCACGTCGGGGAAGTACGTGTTGTAGTAGAGATCGGCGTTGTAGG
CAAAGGTCATGCCACCGCAGTGACGGATGGACGCGGCAATCATCAACATG
ATCATTGCCGGATTCTTGATAACTTGCCACAGGCTCACTGGTTTGCCGCT
AGACGTCTGGCGGTCACCCTCACCGATGGCCTTGCGC
BS17828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-PA | 1608 | CG14439-RA | 738..1600 | 887..25 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 2296 | CG14439-RC | 1117..1979 | 887..25 | 4315 | 100 | Minus |
| CG14439-RB | 2428 | CG14439-RB | 1249..2111 | 887..25 | 4315 | 100 | Minus |
| CG14439-RA | 2096 | CG14439-RA | 917..1779 | 887..25 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6754513..6755113 | 887..287 | 3005 | 100 | Minus |
| X | 23542271 | X | 6755172..6755435 | 288..25 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 13:55:41 has no hits.
BS17828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:48 Download gff for
BS17828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-PA | 738..1608 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:25 Download gff for
BS17828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 917..1795 | 11..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:15:48 Download gff for
BS17828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 917..1795 | 11..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:15:48 Download gff for
BS17828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6754513..6755111 | 289..887 | 100 | -> | Minus |
| X | 6755172..6755451 | 11..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:25 Download gff for
BS17828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6648546..6649144 | 289..887 | 100 | -> | Minus |
| arm_X | 6649205..6649484 | 11..288 | 98 | | Minus |
BS17828.5prime Sequence
840 bp (821 high quality bases) assembled on 2007-05-30
> BS17828.5prime
GAAGTTATCACTCTACATGATACCTATTCTGGAGAAACTCAGCGGGTTCT
ACAACACCTACGTCTTGGCCGTACTCACCATTGGTTATATCCTGGGCGAA
TTGGGTCACTATCTGATCGGAGTGACCTCCAAGCAGACGGCCATTGAGTT
GGACTACGGTGATCATGCCTGCCAGCAGAACACCTCGATGTTCAATCGCC
ACGAGTTGCCCACCCAGTGCTCGGCGGTTATGAATGAGACCAGCTGCTAT
GCCCTTGATTTCAACGGCACTGGCTATTGCGAGTGGAACTACAATGGACT
GGGCATCGACTACCAGATCCTGGCCGGACCCACCTTCATCCTGATTTTCA
CCATCGCCGGCGTATTTATGGGCTTCGCAGCGGACAAGTACAATCGCGTC
AACATGCTGACTGTGTGCACAGTGATCTTCGGCATTGCCATGATTCTGCA
GGGCACCGTTAAGGAATACTGGCAGCTGGTAATTTTGCGTATGATCATGG
CAGCCGGCGAGTCGGGTTGCAATCCCTTGGCCACGGGCATTATGTCCGAT
ATCTTTCCGGAGGATAAGAGAGCACTAGTCATGGCCATCTTCAACTGGGG
AATTTATGGAGGATATGGAATCGCCTTCCCCGTGGGTCGCTACATCACCA
AGCTGAATTTCTGGAATCTGGGATGGCGCGTTTGCTACTTGGGCGCCGGT
GTCCTTACCGTAATTATGGCCGCACTGACCGGAACCACTTTGCGGGAGCC
GGAGCGCAAGGCCATCGGTGAGGGTGACCGCCAGACGTCTAGCGGCAAAC
CAGTGAGCCTGTGGCAAGTTATCAAGAATCCGGCAATGAT
BS17828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-PA | 1608 | CG14439-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 2296 | CG14439-RC | 380..1203 | 17..840 | 4120 | 100 | Plus |
| CG14439-RB | 2428 | CG14439-RB | 512..1335 | 17..840 | 4120 | 100 | Plus |
| CG14439-RA | 2096 | CG14439-RA | 180..1003 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6753776..6754599 | 17..840 | 4120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:01:42 has no hits.
BS17828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:38:52 Download gff for
BS17828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:40 Download gff for
BS17828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..1003 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:10 Download gff for
BS17828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..1003 | 17..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:10 Download gff for
BS17828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6753776..6754599 | 17..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:40 Download gff for
BS17828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6647809..6648632 | 17..840 | 100 | | Plus |
BS17828.complete Sequence
1640 bp assembled on 2010-01-09
GenBank Submission: KX805067
> BS17828.complete
GAAGTTATCAGTCGACATGATACCTATTCTGGAGAAACTCAGCGGGTTCT
ACAACACCTACGTCTTGGCCGTACTCACCATTGGTTATATCCTGGGCGAA
TTGGGTCACTATCTGATCGGAGTGACCTCCAAGCAGACGGCCATTGAGTT
GGACTACGGTGATCATGCCTGCCAGCAGAACACCTCGATGTTCAATCGCC
ACGAGTTGCCCACCCAGTGCTCGGCGGTTATGAATGAGACCAGCTGCTAT
GCCCTTGATTTCAACGGCACTGGCTATTGCGAGTGGAACTACAATGGACT
GGGCATCGACTACCAGATCCTGGCCGGACCCACCTTCATCCTGATTTTCA
CCATCGCCGGCGTATTTATGGGCTTCGCAGCGGACAAGTACAATCGCGTC
AACATGCTGACTGTGTGCACAGTGATCTTCGGCATTGCCATGATTCTGCA
GGGCACCGTTAAGGAATACTGGCAGCTGGTAATTTTGCGTATGATCATGG
CAGCCGGCGAGTCGGGTTGCAATCCCTTGGCCACGGGCATTATGTCCGAT
ATCTTTCCGGAGGATAAGAGAGCACTAGTCATGGCCATCTTCAACTGGGG
AATTTATGGAGGATATGGAATCGCCTTCCCCGTGGGTCGCTACATCACCA
AGCTGAATTTCTGGAATCTGGGATGGCGCGTTTGCTACTTGGGCGCCGGT
GTCCTTACCGTAATTATGGCCGCACTGACCGGAACCACTTTGCGGGAGCC
GGAGCGCAAGGCCATCGGTGAGGGTGACCGCCAGACGTCTAGCGGCAAAC
CAGTGAGCCTGTGGCAAGTTATCAAGAATCCGGCAATGATCATGTTGATG
ATTGCCGCGTCCATCCGTCACTGCGGTGGCATGACCTTTGCCTACAACGC
CGATCTCTACTACAACACGTACTTCCCCGACGTGGACTTGGGCTGGTGGC
TCTTTGGGGTCACCATTGGCATTGGCAGCGTGGGTGTGGTCGTCGGTGGC
ATTGTGTCGGACAAGATTGTCGCCAAGATGGGCATTCGATCACGCGCCTT
TGTATTGGCTGTTAGCCAGCTAATTGCCACACTACCAGCCTTCGGATCGG
TCTACTTTGACCCGCTGTGGGCCATGATCACGCTGGGCCTGAGTTATTTC
TTCGCCGAGATGTGGTTCGGTATTGTCTTTGCCATTGTTGTGGAGATTGT
TCCGCTGCGCGTTCGCTCCTCGACCATTGGCGTCTTTCTGTTTGTGATGA
ACAACATTGGCGGCAACCTGCCCATCCTGGTGGATCCGGTGGCCAAGATC
CTGGGCTATCGCGGTTCGATCATGATCTTCTACGCTGGATTCTACGGCAT
CAGTTCTATTCTCTTCTTCATCACCTGTTTCCTGCTGGAAGGCAAGCCTG
ATGAGGTGGGACAGCCGGAGTCGCCGAAGAGCCATCCGGATGCCGTGCTC
AATGCTCGCCACATGCACGGACACGACAACTCCGTGTTCTCCGTGGACGA
GACCTTGCCCTCCAACGGACGTCCTGCCCAACTTCCGCAGCATCTGCAGA
TGTCCAGCAATGGATACGACAAGTCCCAGATTTCTCCGCCACGACAAAAT
GGCGCGGAGAGCAGTAGACTATAGAAGCTTTCTAGACCAT
BS17828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 1608 | CG14439-PC | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| CG14439-RB | 1608 | CG14439-PB | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| CG14439-RA | 1608 | CG14439-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 2296 | CG14439-RC | 380..1988 | 17..1625 | 8045 | 100 | Plus |
| CG14439-RB | 2428 | CG14439-RB | 512..2120 | 17..1625 | 8045 | 100 | Plus |
| CG14439-RA | 2096 | CG14439-RA | 180..1788 | 17..1625 | 8045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6753776..6755113 | 17..1354 | 6690 | 100 | Plus |
| X | 23542271 | X | 6755172..6755444 | 1353..1625 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:54:51 has no hits.
BS17828.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:58 Download gff for
BS17828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 175..1782 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:15 Download gff for
BS17828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..1787 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:58 Download gff for
BS17828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 175..1782 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:36 Download gff for
BS17828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..1787 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:36 Download gff for
BS17828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6753776..6755111 | 17..1352 | 100 | -> | Plus |
| X | 6755172..6755443 | 1353..1624 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:15 Download gff for
BS17828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6647809..6649144 | 17..1352 | 100 | -> | Plus |
| arm_X | 6649205..6649476 | 1353..1624 | 100 | | Plus |
BS17828.pep Sequence
Translation from 16 to 1623
> BS17828.pep
MIPILEKLSGFYNTYVLAVLTIGYILGELGHYLIGVTSKQTAIELDYGDH
ACQQNTSMFNRHELPTQCSAVMNETSCYALDFNGTGYCEWNYNGLGIDYQ
ILAGPTFILIFTIAGVFMGFAADKYNRVNMLTVCTVIFGIAMILQGTVKE
YWQLVILRMIMAAGESGCNPLATGIMSDIFPEDKRALVMAIFNWGIYGGY
GIAFPVGRYITKLNFWNLGWRVCYLGAGVLTVIMAALTGTTLREPERKAI
GEGDRQTSSGKPVSLWQVIKNPAMIMLMIAASIRHCGGMTFAYNADLYYN
TYFPDVDLGWWLFGVTIGIGSVGVVVGGIVSDKIVAKMGIRSRAFVLAVS
QLIATLPAFGSVYFDPLWAMITLGLSYFFAEMWFGIVFAIVVEIVPLRVR
SSTIGVFLFVMNNIGGNLPILVDPVAKILGYRGSIMIFYAGFYGISSILF
FITCFLLEGKPDEVGQPESPKSHPDAVLNARHMHGHDNSVFSVDETLPSN
GRPAQLPQHLQMSSNGYDKSQISPPRQNGAESSRL*
BS17828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-PC | 535 | CG14439-PC | 1..535 | 1..535 | 2815 | 100 | Plus |
| CG14439-PB | 535 | CG14439-PB | 1..535 | 1..535 | 2815 | 100 | Plus |
| CG14439-PA | 535 | CG14439-PA | 1..535 | 1..535 | 2815 | 100 | Plus |
