Clone Sequence Records
BS17833.5prime Sequence
660 bp (647 high quality bases) assembled on 2007-05-30
> BS17833.5prime
TGAAGTTATCCCCCTTCAGGGCCAATAAAACCTGTTGCCGAGGACCGGGT
TACGCAACCCCCCTGGACGCCATGAGGAGTGGTCCCCTCGAGAAGCTCCT
CTACACGGTCACCGTTCAGCCCAACTTGGATGAGCCGCACGGCGATTATC
TGTCCACAGTCGACGTGGATCCCGAGAGCCCCACCTACTGTCAGATAGTG
CACCGTACGTTTACAAATCGCAAGGGTGATGAACTGCATCATTCTGGCTG
GAACGCCTGCTCCAGTTGTTACTATGTCGACGAGAGCTCTAAGACGGTGC
CAAAAAGAGATAGGCTGGTATTACCGTCCCTAAATTCCGACTTTATATAC
ATACTCGATGTGGTTACGGATCCGCGAAAGCCCGAGATTGTCAAGACCAT
TGATGGTGATGTCTTGAAGAGCCACAATGTGACGGCTCCGCATACCACAC
ACTGTTTGGCCAATGGGAACATCATGATATCCGTGATGGGCGATGCAGAG
GGATATGCCAAGGGTGACTTTATCCTCTTCGATTCGGACTTCAATTGCAT
CGGTACTTGGACCAAGGGCGATAAGAAGGCATTGTGCGGATACGATTTCT
GGTATCAGCCATATTTCGATGTCATGGTTTCTTCGGAATGGGGAGCTCCC
CATAAATGGC
BS17833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-PA | 1461 | CG7966-RA | 5..643 | 22..660 | 3120 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-RA | 1557 | CG7966-RA | 52..690 | 22..660 | 3150 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13050459..13050927 | 660..192 | 2330 | 99.8 | Minus |
3R | 32079331 | 3R | 13051120..13051283 | 194..31 | 790 | 98.8 | Minus |
Blast to na_te.dros performed 2015-02-13 13:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3719..3809 | 274..367 | 120 | 61.7 | Plus |
BS17833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:09 Download gff for
BS17833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-PA | 1..643 | 18..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:18 Download gff for
BS17833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 52..690 | 22..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:51 Download gff for
BS17833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 52..690 | 22..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:51 Download gff for
BS17833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13050459..13050924 | 195..660 | 99 | <- | Minus |
3R | 13051120..13051286 | 28..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:18 Download gff for
BS17833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8876181..8876646 | 195..660 | 99 | <- | Minus |
arm_3R | 8876842..8877008 | 28..194 | 98 | | Minus |
BS17833.3prime Sequence
714 bp (679 high quality bases) assembled on 2007-05-30
> BS17833.3prime
ATCACAGGCCCGCGCCACGAAAGGACGAGAAAGCCCCCACCCCTTTTTAG
CCAGCCAAATGTCCGATGTGCAATCACCGCCAGGATAACGCATTTCGTGG
GGCAAACTAGGACCATACCGTTCATTGGCGAAGTCCACCAAAAAGTCCTC
ATTGAGGGAAATTCCTCCATTCACAGTGTCCACATCAATCAGGACAATAT
GACCGCCCTGCGAAACCATTTTTGGATAGAACTGCTTATCCCATGGCGAA
TACAGAGATGAGGAGACATACAAGCGCTTGCCATCGAGGGATAGCTGCAG
CATTTGGGGACCTCCTTCCAAGCGACGTCCCTTCACGTAACGAGCTGGAG
GTCTCTCCTTCAGTTCTTTATCCTCCTTAACAATCACATTTGGCAAATCA
CTGCATATCGCACCGCCAAGGAAAAGCTGACCAGTCAGCTTCGGATTCTC
GGGATCGGTGATATCATATTGTCTCACATCGCCATGTCGCCAACAGTTGA
CATATAGAAATCGGTCGTCCAAAGAGATGATAATGTCCGAAATCATGCCA
CCCATATCTTCAGCTACTCCACTGCCGGTATCGACCAGTTTGCCGGGTAT
GTCTATTACCTTCTTGGCTTCAAATTCATCGGAATCTGATTTCTTCTTAA
AGTGGAACACCTTGGCATTGAGGGCACATCCCACGAATCCCTCTGCCTTC
TTAGGATTGTGCAC
BS17833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-PA | 1461 | CG7966-RA | 785..1451 | 713..47 | 3285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-RA | 1557 | CG7966-RA | 832..1498 | 713..47 | 3305 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13049898..13050254 | 357..713 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 13049457..13049643 | 47..233 | 905 | 98.9 | Plus |
3R | 32079331 | 3R | 13049711..13049838 | 232..359 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:27:34 has no hits.
BS17833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:05 Download gff for
BS17833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-PA | 784..1459 | 39..714 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:14 Download gff for
BS17833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 831..1506 | 39..714 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:39 Download gff for
BS17833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 831..1506 | 39..714 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:39 Download gff for
BS17833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13049449..13049641 | 39..231 | 96 | <- | Plus |
3R | 13049711..13049836 | 232..357 | 100 | <- | Plus |
3R | 13049899..13050254 | 358..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:14 Download gff for
BS17833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8875171..8875363 | 39..231 | 96 | <- | Plus |
arm_3R | 8875433..8875558 | 232..357 | 100 | <- | Plus |
arm_3R | 8875621..8875976 | 358..714 | 99 | | Plus |
BS17833.complete Sequence
1493 bp assembled on 2009-08-24
GenBank Submission: KX800768
> BS17833.complete
GAAGTTATCAGTCGACATGTCCAATAAAACCTGTTGCCGAGGACCGGGTT
ACGCAACCCCCCTGGACGCCATGAGGAGTGGTCCCCGGGAGAAGCTCCTC
TACACGGTCACCGTTCAGCCCAACTTGGATGAGCCGCACGGCGATTATCT
GTCCACAGTCGACGTGGATCCCGAGAGCCCCACCTACTGTCAGATAGTGC
ACCGTACGTTTACAAATCGCAAGGGTGATGAACTGCATCATTCTGGCTGG
AACGCCTGCTCCAGTTGTTACTATGTCGACGAGAGCTCTAAGACGGTGCC
AAAAAGAGATAGGCTGGTATTACCGTCCCTAAATTCCGACTTTATATACA
TACTCGATGTGGTTACGGATCCGCGAAAGCCCGAGATTGTCAAGACCATT
GATGGTGATGTCTTGAAGAGCCACAATGTGACGGCTCCGCATACCACACA
CTGTTTGGCCAATGGGAACATCATGATATCCGTGATGGGCGATGCAGAGG
GATATGCCAAGGGTGACTTTATCCTCTTCGATTCGGACTTCAATTGCATC
GGTACTTGGACCAAGGGCGATAAGAAGGCATTGTGCGGATACGATTTCTG
GTATCAGCCATATTTCGATGTCATGGTTTCTTCGGAATGGGGAGCTCCCA
ATAAATGGCGACGAGGCTGGAAGAATGTTGACCTGGAGGATATGTCTCAG
TACGGCTGTCGTCTCAACTTCTACAAATGGTCCACGCAGACTCTCTACCA
GACCATCGACCTGGGATCGGATGGCATAACGCCCCTGGAGATTCGATTTC
TGCACAATCCTAAGAAGGCAGAGGGATTCGTGGGATGTGCCCTCAATGCC
AAGGTGTTCCACTTTAAGAAGAAATCAGATTCCGATGAATTTGAAGCCAA
GAAGGTAATAGACATACCCGGCAAACTGGTCGATACCGGCAGTGGAGTAG
CTGAAGATATGGGTGGCATGATTTCGGACATTATCATCTCTTTGGACGAC
CGATTTCTATATGTCAACTGTTGGCGACATGGCGATGTGAGACAATATGA
TATCACCGATCCCGAGAATCCGAAGCTGACTGGTCAGCTTTTCCTTGGCG
GTGCGATATGCAGTGATTTGCCAAATGTGATTGTTAAGGAGGATAAAGAA
CTGAAGGAGAGACCTCCAGCTCGTTACGTGAAGGGACGTCGCTTGGAAGG
AGGTCCCCAAATGCTGCAGCTATCCCTCGATGGCAAGCGCTTGTATGTCT
CCTCATCTCTGTATTCGCCATGGGATAAGCAGTTCTATCCAAAAATGGTT
TCGCAGGGCGGTCATATTGTCCTGATTGATGTGGACACTGTGAATGGAGG
AATTTCCCTCAATGAGGACTTTTTGGTGGACTTCGCCAATGAACCCTATG
GTCCTAGTTTGCCCCACGAAATGCGTTATCCTGGCGGTGATTGCACATCG
GACATTTGGCTGGCTAATGATGCGTAAAAGCTTTCTAGACCAT
BS17833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-RA | 1461 | CG7966-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-RA | 1557 | CG7966-RA | 48..1508 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13049898..13050392 | 1157..663 | 2475 | 100 | Minus |
3R | 32079331 | 3R | 13050455..13050927 | 663..191 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 13049447..13049643 | 1477..1281 | 985 | 100 | Minus |
3R | 32079331 | 3R | 13051120..13051283 | 193..30 | 820 | 100 | Minus |
3R | 32079331 | 3R | 13049711..13049838 | 1282..1155 | 640 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3719..3809 | 273..366 | 120 | 61.7 | Plus |
BS17833.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:43 Download gff for
BS17833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 45..1503 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:35 Download gff for
BS17833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 48..1506 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:19 Download gff for
BS17833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7966-RA | 48..1506 | 17..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:19 Download gff for
BS17833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13049449..13049641 | 1283..1475 | 100 | <- | Minus |
3R | 13049711..13049836 | 1157..1282 | 100 | <- | Minus |
3R | 13049899..13050391 | 664..1156 | 100 | <- | Minus |
3R | 13050455..13050924 | 194..663 | 100 | <- | Minus |
3R | 13051120..13051283 | 30..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:35 Download gff for
BS17833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8876842..8877005 | 30..193 | 100 | <- | Minus |
arm_3R | 8875171..8875363 | 1283..1475 | 100 | <- | Minus |
arm_3R | 8875433..8875558 | 1157..1282 | 100 | <- | Minus |
arm_3R | 8875621..8876113 | 664..1156 | 100 | <- | Minus |
arm_3R | 8876177..8876646 | 194..663 | 100 | <- | Minus |
BS17833.pep Sequence
Translation from 16 to 1476
> BS17833.pep
MSNKTCCRGPGYATPLDAMRSGPREKLLYTVTVQPNLDEPHGDYLSTVDV
DPESPTYCQIVHRTFTNRKGDELHHSGWNACSSCYYVDESSKTVPKRDRL
VLPSLNSDFIYILDVVTDPRKPEIVKTIDGDVLKSHNVTAPHTTHCLANG
NIMISVMGDAEGYAKGDFILFDSDFNCIGTWTKGDKKALCGYDFWYQPYF
DVMVSSEWGAPNKWRRGWKNVDLEDMSQYGCRLNFYKWSTQTLYQTIDLG
SDGITPLEIRFLHNPKKAEGFVGCALNAKVFHFKKKSDSDEFEAKKVIDI
PGKLVDTGSGVAEDMGGMISDIIISLDDRFLYVNCWRHGDVRQYDITDPE
NPKLTGQLFLGGAICSDLPNVIVKEDKELKERPPARYVKGRRLEGGPQML
QLSLDGKRLYVSSSLYSPWDKQFYPKMVSQGGHIVLIDVDTVNGGISLNE
DFLVDFANEPYGPSLPHEMRYPGGDCTSDIWLANDA*
BS17833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7966-PA | 486 | CG7966-PA | 1..486 | 1..486 | 2655 | 100 | Plus |