Clone BS17833 Report

Search the DGRC for BS17833

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7966-RA
Protein status:BS17833.pep: full length peptide match
Sequenced Size:1493

Clone Sequence Records

BS17833.5prime Sequence

660 bp (647 high quality bases) assembled on 2007-05-30

> BS17833.5prime
TGAAGTTATCCCCCTTCAGGGCCAATAAAACCTGTTGCCGAGGACCGGGT
TACGCAACCCCCCTGGACGCCATGAGGAGTGGTCCCCTCGAGAAGCTCCT
CTACACGGTCACCGTTCAGCCCAACTTGGATGAGCCGCACGGCGATTATC
TGTCCACAGTCGACGTGGATCCCGAGAGCCCCACCTACTGTCAGATAGTG
CACCGTACGTTTACAAATCGCAAGGGTGATGAACTGCATCATTCTGGCTG
GAACGCCTGCTCCAGTTGTTACTATGTCGACGAGAGCTCTAAGACGGTGC
CAAAAAGAGATAGGCTGGTATTACCGTCCCTAAATTCCGACTTTATATAC
ATACTCGATGTGGTTACGGATCCGCGAAAGCCCGAGATTGTCAAGACCAT
TGATGGTGATGTCTTGAAGAGCCACAATGTGACGGCTCCGCATACCACAC
ACTGTTTGGCCAATGGGAACATCATGATATCCGTGATGGGCGATGCAGAG
GGATATGCCAAGGGTGACTTTATCCTCTTCGATTCGGACTTCAATTGCAT
CGGTACTTGGACCAAGGGCGATAAGAAGGCATTGTGCGGATACGATTTCT
GGTATCAGCCATATTTCGATGTCATGGTTTCTTCGGAATGGGGAGCTCCC
CATAAATGGC

BS17833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-PA 1461 CG7966-RA 5..643 22..660 3120 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-RA 1557 CG7966-RA 52..690 22..660 3150 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13050459..13050927 660..192 2330 99.8 Minus
3R 32079331 3R 13051120..13051283 194..31 790 98.8 Minus
Blast to na_te.dros performed 2015-02-13 13:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3719..3809 274..367 120 61.7 Plus

BS17833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:09 Download gff for BS17833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7966-PA 1..643 18..660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:18 Download gff for BS17833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 52..690 22..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:51 Download gff for BS17833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 52..690 22..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:51 Download gff for BS17833.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13050459..13050924 195..660 99 <- Minus
3R 13051120..13051286 28..194 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:18 Download gff for BS17833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8876181..8876646 195..660 99 <- Minus
arm_3R 8876842..8877008 28..194 98   Minus

BS17833.3prime Sequence

714 bp (679 high quality bases) assembled on 2007-05-30

> BS17833.3prime
ATCACAGGCCCGCGCCACGAAAGGACGAGAAAGCCCCCACCCCTTTTTAG
CCAGCCAAATGTCCGATGTGCAATCACCGCCAGGATAACGCATTTCGTGG
GGCAAACTAGGACCATACCGTTCATTGGCGAAGTCCACCAAAAAGTCCTC
ATTGAGGGAAATTCCTCCATTCACAGTGTCCACATCAATCAGGACAATAT
GACCGCCCTGCGAAACCATTTTTGGATAGAACTGCTTATCCCATGGCGAA
TACAGAGATGAGGAGACATACAAGCGCTTGCCATCGAGGGATAGCTGCAG
CATTTGGGGACCTCCTTCCAAGCGACGTCCCTTCACGTAACGAGCTGGAG
GTCTCTCCTTCAGTTCTTTATCCTCCTTAACAATCACATTTGGCAAATCA
CTGCATATCGCACCGCCAAGGAAAAGCTGACCAGTCAGCTTCGGATTCTC
GGGATCGGTGATATCATATTGTCTCACATCGCCATGTCGCCAACAGTTGA
CATATAGAAATCGGTCGTCCAAAGAGATGATAATGTCCGAAATCATGCCA
CCCATATCTTCAGCTACTCCACTGCCGGTATCGACCAGTTTGCCGGGTAT
GTCTATTACCTTCTTGGCTTCAAATTCATCGGAATCTGATTTCTTCTTAA
AGTGGAACACCTTGGCATTGAGGGCACATCCCACGAATCCCTCTGCCTTC
TTAGGATTGTGCAC

BS17833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-PA 1461 CG7966-RA 785..1451 713..47 3285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-RA 1557 CG7966-RA 832..1498 713..47 3305 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13049898..13050254 357..713 1785 100 Plus
3R 32079331 3R 13049457..13049643 47..233 905 98.9 Plus
3R 32079331 3R 13049711..13049838 232..359 640 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:27:34 has no hits.

BS17833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:05 Download gff for BS17833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7966-PA 784..1459 39..714 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:14 Download gff for BS17833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 831..1506 39..714 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:39 Download gff for BS17833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 831..1506 39..714 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:39 Download gff for BS17833.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13049449..13049641 39..231 96 <- Plus
3R 13049711..13049836 232..357 100 <- Plus
3R 13049899..13050254 358..714 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:14 Download gff for BS17833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8875171..8875363 39..231 96 <- Plus
arm_3R 8875433..8875558 232..357 100 <- Plus
arm_3R 8875621..8875976 358..714 99   Plus

BS17833.complete Sequence

1493 bp assembled on 2009-08-24

GenBank Submission: KX800768

> BS17833.complete
GAAGTTATCAGTCGACATGTCCAATAAAACCTGTTGCCGAGGACCGGGTT
ACGCAACCCCCCTGGACGCCATGAGGAGTGGTCCCCGGGAGAAGCTCCTC
TACACGGTCACCGTTCAGCCCAACTTGGATGAGCCGCACGGCGATTATCT
GTCCACAGTCGACGTGGATCCCGAGAGCCCCACCTACTGTCAGATAGTGC
ACCGTACGTTTACAAATCGCAAGGGTGATGAACTGCATCATTCTGGCTGG
AACGCCTGCTCCAGTTGTTACTATGTCGACGAGAGCTCTAAGACGGTGCC
AAAAAGAGATAGGCTGGTATTACCGTCCCTAAATTCCGACTTTATATACA
TACTCGATGTGGTTACGGATCCGCGAAAGCCCGAGATTGTCAAGACCATT
GATGGTGATGTCTTGAAGAGCCACAATGTGACGGCTCCGCATACCACACA
CTGTTTGGCCAATGGGAACATCATGATATCCGTGATGGGCGATGCAGAGG
GATATGCCAAGGGTGACTTTATCCTCTTCGATTCGGACTTCAATTGCATC
GGTACTTGGACCAAGGGCGATAAGAAGGCATTGTGCGGATACGATTTCTG
GTATCAGCCATATTTCGATGTCATGGTTTCTTCGGAATGGGGAGCTCCCA
ATAAATGGCGACGAGGCTGGAAGAATGTTGACCTGGAGGATATGTCTCAG
TACGGCTGTCGTCTCAACTTCTACAAATGGTCCACGCAGACTCTCTACCA
GACCATCGACCTGGGATCGGATGGCATAACGCCCCTGGAGATTCGATTTC
TGCACAATCCTAAGAAGGCAGAGGGATTCGTGGGATGTGCCCTCAATGCC
AAGGTGTTCCACTTTAAGAAGAAATCAGATTCCGATGAATTTGAAGCCAA
GAAGGTAATAGACATACCCGGCAAACTGGTCGATACCGGCAGTGGAGTAG
CTGAAGATATGGGTGGCATGATTTCGGACATTATCATCTCTTTGGACGAC
CGATTTCTATATGTCAACTGTTGGCGACATGGCGATGTGAGACAATATGA
TATCACCGATCCCGAGAATCCGAAGCTGACTGGTCAGCTTTTCCTTGGCG
GTGCGATATGCAGTGATTTGCCAAATGTGATTGTTAAGGAGGATAAAGAA
CTGAAGGAGAGACCTCCAGCTCGTTACGTGAAGGGACGTCGCTTGGAAGG
AGGTCCCCAAATGCTGCAGCTATCCCTCGATGGCAAGCGCTTGTATGTCT
CCTCATCTCTGTATTCGCCATGGGATAAGCAGTTCTATCCAAAAATGGTT
TCGCAGGGCGGTCATATTGTCCTGATTGATGTGGACACTGTGAATGGAGG
AATTTCCCTCAATGAGGACTTTTTGGTGGACTTCGCCAATGAACCCTATG
GTCCTAGTTTGCCCCACGAAATGCGTTATCCTGGCGGTGATTGCACATCG
GACATTTGGCTGGCTAATGATGCGTAAAAGCTTTCTAGACCAT

BS17833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-RA 1461 CG7966-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-RA 1557 CG7966-RA 48..1508 17..1477 7305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13049898..13050392 1157..663 2475 100 Minus
3R 32079331 3R 13050455..13050927 663..191 2365 100 Minus
3R 32079331 3R 13049447..13049643 1477..1281 985 100 Minus
3R 32079331 3R 13051120..13051283 193..30 820 100 Minus
3R 32079331 3R 13049711..13049838 1282..1155 640 100 Minus
Blast to na_te.dros performed 2014-11-28 01:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3719..3809 273..366 120 61.7 Plus

BS17833.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:43 Download gff for BS17833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 45..1503 17..1475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:35 Download gff for BS17833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 48..1506 17..1475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:19 Download gff for BS17833.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 48..1506 17..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:19 Download gff for BS17833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13049449..13049641 1283..1475 100 <- Minus
3R 13049711..13049836 1157..1282 100 <- Minus
3R 13049899..13050391 664..1156 100 <- Minus
3R 13050455..13050924 194..663 100 <- Minus
3R 13051120..13051283 30..193 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:35 Download gff for BS17833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8876842..8877005 30..193 100 <- Minus
arm_3R 8875171..8875363 1283..1475 100 <- Minus
arm_3R 8875433..8875558 1157..1282 100 <- Minus
arm_3R 8875621..8876113 664..1156 100 <- Minus
arm_3R 8876177..8876646 194..663 100 <- Minus

BS17833.pep Sequence

Translation from 16 to 1476

> BS17833.pep
MSNKTCCRGPGYATPLDAMRSGPREKLLYTVTVQPNLDEPHGDYLSTVDV
DPESPTYCQIVHRTFTNRKGDELHHSGWNACSSCYYVDESSKTVPKRDRL
VLPSLNSDFIYILDVVTDPRKPEIVKTIDGDVLKSHNVTAPHTTHCLANG
NIMISVMGDAEGYAKGDFILFDSDFNCIGTWTKGDKKALCGYDFWYQPYF
DVMVSSEWGAPNKWRRGWKNVDLEDMSQYGCRLNFYKWSTQTLYQTIDLG
SDGITPLEIRFLHNPKKAEGFVGCALNAKVFHFKKKSDSDEFEAKKVIDI
PGKLVDTGSGVAEDMGGMISDIIISLDDRFLYVNCWRHGDVRQYDITDPE
NPKLTGQLFLGGAICSDLPNVIVKEDKELKERPPARYVKGRRLEGGPQML
QLSLDGKRLYVSSSLYSPWDKQFYPKMVSQGGHIVLIDVDTVNGGISLNE
DFLVDFANEPYGPSLPHEMRYPGGDCTSDIWLANDA*

BS17833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-PA 486 CG7966-PA 1..486 1..486 2655 100 Plus