Clone Sequence Records
BS17835.3prime Sequence
852 bp (756 high quality bases) assembled on 2007-05-30
> BS17835.3prime
ATGGTCTAGAAAGCTTTTATCCGTAACGGATGATGGCCTCGTAGGCGGCG
AAGATTATGTTGGCCACCTCCACGGAGCGCGATTTGAGGCTGAGAGTGGC
TTCCGGATTGCCCGGCTGCAGCTTTAGCTCCAGCAGCACCCAAATGTTGT
TGGTCAGCTTGAGTGACTGGTAGAGCATGTCCTGGCCCTCGACGTTACGC
TTGGCGATGGTGAAGATGTTGTTGGTGGTCATCTTGGAGGCGATGCCGTC
GGTAGTGCCAATTACACCGCTCAGGGTGTACTGCAGTTCGTTGGCGGCGG
GGATCTCCTTCCAGGTGTTGAGGAACACGCGCTTGTCCAACTGCCCATCC
TCGGCGAACAGCACGTTGCCGTGCACCAGGCACGCGAAGTAGAAGATGTC
GATGTTGTTCTTCACGGCCACCTGCAAGTTGTTGAGCGGCTCCATGCGCT
GAATGGGTCCGTTGGTGCCCAAGGCCATGCTGACCTCGATCGATTGGTTG
GGTGGAAGGGGAGCAGCCTGCATGGGCGACGCGGGCACCAGGCCGAAGCT
GTTCTTGTTCAGTTGGATGGCGAAGTTAGTCATCGGCTGCATGGCTTTGT
TGGTCAGAGTCATGTCCATGAACACCTCGCCGTTGCGGCGTGAGAACGTT
CCTTGTATTTCGAGTCCCTTGCCCTTCTCCGCTGGCAGCCATGTGACCTT
GGGAATCTGAACACCCACCGATAGCGTTGCTCCGCCCAGTCCAAAAATGT
CGCCTAGCAGGCTGGTGGCACCGCCGGGAGCCGCCTCTGCTGGCGGTCCA
CCGAGGAGTATATCAAGACCCGCGCCCAGAAGGTCCACATTGCTGGTGGC
GG
BS17835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12532-PA | 2766 | Bap-RA | 1931..2758 | 852..25 | 4090 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 3228 | CG12532-RA | 2042..2869 | 852..25 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19733395..19734222 | 852..25 | 4110 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:03:19 has no hits.
BS17835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:22 Download gff for
BS17835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12532-PA | 1931..2766 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:43:51 Download gff for
BS17835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 2042..2877 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:35 Download gff for
BS17835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 2042..2877 | 17..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:35 Download gff for
BS17835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19733395..19734230 | 17..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:43:51 Download gff for
BS17835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19627428..19628263 | 17..852 | 99 | | Minus |
BS17835.5prime Sequence
872 bp (784 high quality bases) assembled on 2007-05-30
> BS17835.5prime
GAAGTTATCACTCGACATGACTGATTCCAAGTACTTCACCACCACCAAGA
AGGGCGAGATCTTCGAGCTCAAGTCGGAGCTGAATAACGACAAGAAGGAG
AAGAAGAAGGAGGCGGTGAAGAAGGTGATCGCCAGCATGACCGTGGGCAA
AGACGTGTCCGCCCTCTTCCCGGACGTGGTCAACTGCATGCAGACGGACA
ACCTGGAGCTGAAGAAGCTGGTCTACCTTTATCTGATGAACTACGCCAAA
TCGCAGCCGGACATGGCCATCATGGCGGTTAATACGTTCGTGAAGGACTG
CGAGGACTCCAATCCGCTTATCCGGGCGCTGGCCGTGCGCACCATGGGCT
GCATTCGGGTGGACAAGATCACCGAGTACCTGTGCGAGCCGCTGCGCAAG
TGCCTGAAGGACGAGGATCCGTATGTGCGCAAGACGGCCGCAGTGTGCGT
GGCCAAGCTGTACGACATTTCAGCCACAATGGTGGAGGACCAAGGCTTTC
TGGACCAACTGAAGGATCTGCTATCTGACTCGAATCCCATGGTGGTGGCC
AATGCGGTGGCCGCTCTTAGCGAGATTAACGAGGCAAGTCAGTCCGGCCA
GCCCCTCGTGGAGATGAACTCGGTCACCATTAACAAGCTGCTGACGGCGC
TCAACGAGTGCACCGAGTGGGGCCAGGTCTTTATCCTGGACTCGCTGGCC
AACTACAGCCCGAAGGATGAGCGCGAGGCGCAGTCCATCTGCGAGCGAAT
CACTCCGCGTCTGGCTCACGCCAACGCCGCCGTCGTTTTGAGCGCCGTCA
AGGTGCTGATGAAGTTGCTCGAGATGCTGTCCAGCGACAGCGACTTTTGC
GCCACGCTCACCAAGAAGCGGG
BS17835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12532-PA | 2766 | Bap-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 3228 | CG12532-RA | 112..964 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19731400..19732252 | 17..869 | 4265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:03:21 has no hits.
BS17835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:25 Download gff for
BS17835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12532-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:09:43 Download gff for
BS17835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 112..967 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:50 Download gff for
BS17835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 112..967 | 17..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:50 Download gff for
BS17835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19731400..19732255 | 17..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:09:43 Download gff for
BS17835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19625433..19626288 | 17..872 | 99 | | Plus |
BS17835.complete Sequence
2798 bp assembled on 2009-08-24
GenBank Submission: KX806111
> BS17835.complete
GAAGTTATCAGTCGACATGACTGATTCCAAGTACTTCACCACCACCAAGA
AGGGCGAGATCTTCGAGCTCAAGTCGGAGCTGAATAACGACAAGAAGGAG
AAGAAGAAGGAGGCGGTGAAGAAGGTGATCGCCAGCATGACCGTGGGCAA
AGACGTGTCCGCCCTCTTCCCGGACGTGGTCAACTGCATGCAGACGGACA
ACCTGGAGCTGAAGAAGCTGGTCTACCTTTATCTGATGAACTACGCCAAA
TCGCAGCCGGACATGGCCATCATGGCGGTTAATACGTTCGTGAAGGACTG
CGAGGACTCCAATCCGCTTATCCGGGCGCTGGCCGTGCGCACCATGGGCT
GCATTCGGGTGGACAAGATCACCGAGTACCTGTGCGAGCCGCTGCGCAAG
TGCCTGAAGGACGAGGATCCGTATGTGCGCAAGACGGCCGCAGTGTGCGT
GGCCAAGCTGTACGACATTTCAGCCACAATGGTGGAGGACCAAGGCTTTC
TGGACCAACTGAAGGATCTGCTATCTGACTCGAATCCCATGGTGGTGGCC
AATGCGGTGGCCGCTCTTAGCGAGATTAACGAGGCAAGTCAGTCCGGCCA
GCCCCTCGTGGAGATGAACTCGGTCACCATTAACAAGCTGCTGACGGCGC
TCAACGAGTGCACCGAGTGGGGCCAGGTCTTTATCCTGGACTCGCTGGCC
AACTACAGCCCGAAGGATGAGCGCGAGGCGCAGTCCATCTGCGAGCGAAT
CACTCCGCGTCTGGCTCACGCCAACGCCGCCGTCGTTTTGAGCGCCGTCA
AGGTGCTGATGAAGTTGCTCGAGATGCTGTCCAGCGACAGCGACTTTTGC
GCCACGCTCACCAAGAAGCTGGCTCCGCCATTGGTTACGTTGCTCTCCTC
AGAGCCGGAGGTGCAGTATGTGGCCCTGCGCAACATCAATCTGATTGTCC
AGAAGCGGCCAGACATTCTCAAGCACGAAATGAAGGTGTTCTTCGTGAAA
TACAACGATCCCATTTACGTGAAACTGGAGAAGCTAGACATTATGATCCG
CCTGGCCAACCAGAGCAACATCGCCCAGGTGCTTAGCGAGCTGAAGGAGT
ACGCCACCGAGGTGGACGTGGATTTTGTGCGCAAGGCAGTCCGCGCCATC
GGGCGATGCGCCATTAAGGTGGAGCCCTCAGCCGAACGCTGCGTGTCCAC
GCTGCTTGATCTTATCCAGACCAAGGTCAACTACGTGGTGCAGGAGGCCA
TTGTGGTCATCAAGGACATCTTCCGCAAGTACCCCAACAAGTACGAGAGC
ATTATCAGCACGCTGTGCGAGAATCTGGACACTCTGGACGAGCCGGAGGC
ACGCGCATCAATGGTTTGGATCATTGGCGAGTACGCAGAGCGCATTGACA
ACGCGGACGAGCTGCTTGACAGCTTCCTTGAAGGATTCCAGGATGAAAAT
GCACAGGTGCAGTTGCAGCTGCTGACGGCCGTGGTTAAGTTGTTCCTCAA
GCGCCCGTCGGACACCCAGGAGCTGGTGCAGCACGTACTATCATTGGCTA
CCCAGGATTCGGACAACCCCGATCTGCGTGACCGTGGCTTCATCTACTGG
CGTCTCCTGTCCACGGACCCGGCCGCCGCCAAGGAGGTGGTGCTGGCCGA
TAAGCCACTCATCTCAGAGGAGACCGACCTTTTGGAGCCGACATTGCTGG
ACGAGCTCATCTGCCACATTAGCTCGCTGGCCAGCGTTTATCATAAGCCT
CCCACCGCGTTCGTGGAGGGTCGCGGAGCCGGTGTGCGCAAGTCGCTGCC
CAACCGAGCCGCTGGATCTGCAGCTGGTGCAGAGCAAGCAGAAAACGCAG
CCGGCTCAGAGGCAATGGTCATTCCCAACCAGGAGTCGCTCATTGGAGAT
CTGCTCTCCATGGATATCAACGCACCCGCCATGCCATCTGCTCCGGCCGC
CACCAGCAATGTGGACCTTCTGGGCGGCGGTCTTGATATACTCCTCGGTG
GACCGCCAGCAGAGGCGGCTCCCGGCGGTGCCACCAGCCTGCTAGGCGAC
ATTTTTGGACTGGGCGGAGCAACGCTATCGGTGGGTGTTCAGATTCCCAA
GGTCACATGGCTGCCAGCGGAGAAGGGCAAGGGACTCGAAATACAAGGAA
CGTTCTCACGCCGCAACGGCGAGGTGTTCATGGACATGACTCTGACCAAC
AAAGCCATGCAGCCGATGACTAACTTCGCCATCCAACTGAACAAGAACAG
CTTCGGCCTGGTGCCCGCGTCGCCCATGCAGGCTGCTCCCCTTCCACCCA
ACCAATCGATCGAGGTCAGCATGGCCTTGGGCACCAACGGACCCATTCAG
CGCATGGAGCCGCTCAACAACTTGCAGGTGGCCGTGAAGAACAACATCGA
CATCTTCTACTTCGCGTGCCTGGTGCACGGCAACGTGCTGTTCGCCGAGG
ATGGGCAGTTGGACAAGCGCGTGTTCCTCAACACCTGGAAGGAGATCCCC
GCCGCCAACGAACTGCAGTACACCCTGAGCGGTGTAATTGGCACTACCGA
CGGCATCGCCTCCAAGATGACCACCAACAACATCTTCACCATCGCCAAGC
GTAACGTCGAGGGCCAGGACATGCTCTACCAGTCACTCAAGCTGACCAAC
AACATTTGGGTGCTGCTGGAGCTAAAGCTGCAGCCGGGCAATCCGGAAGC
CACTCTCAGCCTCAAATCGCGCTCCGTGGAGGTGGCCAACATAATCTTCG
CCGCCTACGAGGCCATCATCCGTTCTCCATAAAAGCTTTCTAGACCAT
BS17835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 2766 | CG12532-PA | 1..2766 | 17..2782 | 13830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 3228 | CG12532-RA | 112..2877 | 17..2782 | 13830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19731400..19732825 | 17..1442 | 7130 | 100 | Plus |
| X | 23542271 | X | 19732886..19734230 | 1438..2782 | 6725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:28:15 has no hits.
BS17835.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:42 Download gff for
BS17835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap-RA | 113..2876 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:33 Download gff for
BS17835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 112..2875 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:17 Download gff for
BS17835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 112..2875 | 17..2780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:17 Download gff for
BS17835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19731400..19732824 | 17..1441 | 100 | -> | Plus |
| X | 19732890..19734228 | 1442..2780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:33 Download gff for
BS17835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19626923..19628261 | 1442..2780 | 100 | | Plus |
| arm_X | 19625433..19626857 | 17..1441 | 100 | -> | Plus |
BS17835.pep Sequence
Translation from 16 to 2781
> BS17835.pep
MTDSKYFTTTKKGEIFELKSELNNDKKEKKKEAVKKVIASMTVGKDVSAL
FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNP
LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD
ISATMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINEASQSGQPLVEM
NSVTINKLLTALNECTEWGQVFILDSLANYSPKDEREAQSICERITPRLA
HANAAVVLSAVKVLMKLLEMLSSDSDFCATLTKKLAPPLVTLLSSEPEVQ
YVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLANQS
NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEPSAERCVSTLLDLI
QTKVNYVVQEAIVVIKDIFRKYPNKYESIISTLCENLDTLDEPEARASMV
WIIGEYAERIDNADELLDSFLEGFQDENAQVQLQLLTAVVKLFLKRPSDT
QELVQHVLSLATQDSDNPDLRDRGFIYWRLLSTDPAAAKEVVLADKPLIS
EETDLLEPTLLDELICHISSLASVYHKPPTAFVEGRGAGVRKSLPNRAAG
SAAGAEQAENAAGSEAMVIPNQESLIGDLLSMDINAPAMPSAPAATSNVD
LLGGGLDILLGGPPAEAAPGGATSLLGDIFGLGGATLSVGVQIPKVTWLP
AEKGKGLEIQGTFSRRNGEVFMDMTLTNKAMQPMTNFAIQLNKNSFGLVP
ASPMQAAPLPPNQSIEVSMALGTNGPIQRMEPLNNLQVAVKNNIDIFYFA
CLVHGNVLFAEDGQLDKRVFLNTWKEIPAANELQYTLSGVIGTTDGIASK
MTTNNIFTIAKRNVEGQDMLYQSLKLTNNIWVLLELKLQPGNPEATLSLK
SRSVEVANIIFAAYEAIIRSP*
BS17835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-PA | 921 | CG12532-PA | 1..921 | 1..921 | 4641 | 100 | Plus |
| rb-PC | 1160 | CG11427-PC | 342..717 | 247..615 | 418 | 30.8 | Plus |
| rb-PD | 1160 | CG11427-PD | 342..717 | 247..615 | 418 | 30.8 | Plus |
| rb-PA | 1160 | CG11427-PA | 342..717 | 247..615 | 418 | 30.8 | Plus |
| rb-PC | 1160 | CG11427-PC | 47..253 | 17..231 | 353 | 37.7 | Plus |
| rb-PD | 1160 | CG11427-PD | 47..253 | 17..231 | 353 | 37.7 | Plus |
| rb-PA | 1160 | CG11427-PA | 47..253 | 17..231 | 353 | 37.7 | Plus |
| g-PB | 1034 | CG10986-PB | 33..537 | 3..503 | 219 | 18.6 | Plus |
