Clone BS17836 Report

Search the DGRC for BS17836

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptotk-RA
Protein status:BS17836.pep: full length peptide match
Sequenced Size:3134

Clone Sequence Records

BS17836.3prime Sequence

871 bp (831 high quality bases) assembled on 2007-05-30

> BS17836.3prime
ATGGTCTAGAAAGCTTTCACTTCTCGGCACTCTGCATCGCCTTGCTGAGA
GCAGCTCCCAGTTGGCTGAACGAAGGTCGCTCCTTCGGATTGGACACCCA
ACAGGACAGCAATATCTCTCGCAGGCTATCGGGCGTCGCCTCGGCCACTG
ACCACTCCAAGGAGCCCGCCTGGGAACGCTGCACCACCTGCTCGTTGGTC
AGCTCCTCGTGGGGCAGCTTGGTGGCCTGGTTGAAGAGCTCCCACACCAC
CACACCGTAGGCAAAGATGTCGCTCTTGGTGGTGTACTCGTCTTCCTGGA
TGCACTCGGGCGCCAGCCAGCGGATCGGGAGCAGCGTGTTGCGGTGTTTG
TGGTACTCGCGGCTATACTTGTCCTTGCAGAGAGCCGGATAGGATACCTT
CACTATAAACTCACTGGAAATTACGCAGTTGCGAGTGGCCAGATCCCTAT
GGGTGAAGCGAGCTCTGTAGATGGCGTCCATTCCTCGGGCAATTTGATAG
GCGACGGCCAAAACCTGACTGGTGGTGAGTGGCGGCGGTGAGGAGCTGCC
CGCGGTGGCAGTGTTCACTTTTCCGGCGGTGGCCAGCAGGAACTGCTTGA
GATCGCCCCAATCCGTGTACTCCAGCACCATGTAGTGCGGATCCTTTTCG
CGACACAGGCCAAACAGACGTACTACTCCCTTGTGCGAGATGGCGCGCAG
CAGATCTAACTGTCGTCGAAACTCCTGGCAGGCCTGTTCATCCTTCACTT
TATTCANGGCTTTGACCAGAACGAGCTGCTCGAGACCCGATTGATTGTGC
TGATCCTGCTCCTCCTCCTTGATCTCCTCAATGTCGTCCATGGAGGTCTT
GGAGCGACGCTTCTCATTTAA

BS17836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8967-PA 3102 otk-RA 2249..3102 870..17 4251 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
otk-RA 4671 CG8967-RA 3166..4019 870..17 4259 99.9 Minus
otk-RB 4769 CG8967-RB 3166..3926 870..110 3794 99.9 Minus
otk-RB 4769 CG8967-RB 4024..4117 110..17 470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12002784..12003208 446..870 2114 99.8 Plus
2R 25286936 2R 12002387..12002725 110..448 1695 100 Plus
2R 25286936 2R 12002125..12002218 17..110 470 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:35:11 has no hits.

BS17836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:31 Download gff for BS17836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8967-PA 2250..3102 17..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:15 Download gff for BS17836.3prime
Subject Subject Range Query Range Percent Splice Strand
otk-RA 3164..4022 13..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:32 Download gff for BS17836.3prime
Subject Subject Range Query Range Percent Splice Strand
otk-RA 3164..4022 13..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:32 Download gff for BS17836.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12002122..12002217 13..109 97 <- Plus
2R 12002387..12002723 110..446 100 <- Plus
2R 12002785..12003208 447..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:15 Download gff for BS17836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7889627..7889722 13..109 97 <- Plus
arm_2R 7889892..7890228 110..446 100 <- Plus
arm_2R 7890290..7890713 447..871 99   Plus

BS17836.5prime Sequence

875 bp (836 high quality bases) assembled on 2007-05-30

> BS17836.5prime
GAAGTTATCACTCGACATGACTGCTAGGATGATCTCAATATGCGGCCTGG
TCATGGCTTTGATGATGGCTTCCGTTTTGGCCAGCTCATCGCGTTTCCAG
CGAGTGCCCCAAAGTCAGTCCGTGGTGGAAAATGAATCCGTGAAATTCGA
GTGCGAATCGACCGACTCCTACAGTGAACTGCACTACGACTGGTTGCATA
ATGGTCATCGGATTGCGTATGACAAGCGTGTCCATCAAATCGGTTCCAAT
TTGCATATCGAGGCGGTGCGGCGCACGGAGGATGTTGGCAACTATGTTTG
CATCGCGACAAATTTGGCCAGCGGCGCCAGGGAGGCGTCTCCGCCCGCCA
AACTGAGCGTGATATATCTTGAATCGGCCAGTGTTCAGCTGCTGGGCAGC
AATCGCAACGAGCTGCTGCTCAAGTGCCACGTGGAGGGCGCCTCAGGAGA
TTTGGAACCGCTAGAGATCGAATGGTATCGCAACAGCGAGAAACTTAGCA
CCTGGAAGAACGTCCAGCTGGATCAGCATCGCCTGATAATCCGACAGCCG
GGAAGCGAGGACGATGGCCTGTACCGCTGCACCGCCTCCAATGCGGCGGG
TCGAGTGATGAGCAAGCAGGGCTATGTCTACCAGTCCAGTGTGAAGTGCC
TGCCCCGACTTCCTAGGCGCAAGAACGAAAAGATGATGGAGTCCTGNGAC
AAACAGACCTTCCTGTGCCGCGGTAAGCGCGGTGGAGCTGCTGGACTAGA
GGCACTACCCGCCGCTCCCGAGGATCTGCGCATTGTGCAAGGACCCATTG
GTCAGTCGATTATCAAGGAGGGTGAGCCCACGGCTTTTGACCTGTCTGTA
TGAACTGCCCGACGAGCTGAAGAAC

BS17836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8967-PA 3102 otk-RA 1..821 17..837 4086 99.8 Plus
CG8967-PA 3102 otk-RA 819..858 836..875 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
otk-RB 4769 CG8967-RB 918..1775 17..875 4259 99.8 Plus
otk-RA 4671 CG8967-RA 918..1775 17..875 4259 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12005570..12006078 875..366 2489 99.6 Minus
2R 25286936 2R 12013759..12013921 365..203 815 100 Minus
2R 25286936 2R 12013988..12014125 205..68 690 100 Minus
2R 25286936 2R 12018878..12018929 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:14:33 has no hits.

BS17836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:35 Download gff for BS17836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8967-PA 1..858 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:10 Download gff for BS17836.5prime
Subject Subject Range Query Range Percent Splice Strand
otk-RA 909..1775 6..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:30 Download gff for BS17836.5prime
Subject Subject Range Query Range Percent Splice Strand
otk-RA 909..1775 6..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:30 Download gff for BS17836.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12013759..12013920 204..365 100 <- Minus
2R 12013990..12014124 69..203 100 <- Minus
2R 12018878..12018938 6..68 93   Minus
2R 12005570..12006078 366..875 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:10 Download gff for BS17836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7893075..7893583 366..875 99 <- Minus
arm_2R 7901264..7901425 204..365 100 <- Minus
arm_2R 7901495..7901629 69..203 100 <- Minus
arm_2R 7906383..7906443 6..68 93   Minus

BS17836.complete Sequence

3134 bp assembled on 2009-08-24

GenBank Submission: KX804059

> BS17836.complete
GAAGTTATCACTCGACATGACTGCTAGGATGATCTCAATATGCGGCCTGG
TCATGGCTTTGATGATGGCTTCCGTTTTGGCCAGCTCATCGCGTTTCCAG
CGAGTGCCCCAAAGTCAGTCCGTGGTGGAAAATGAATCCGTGAAATTCGA
GTGCGAATCGACCGACTCCTACAGTGAACTGCACTACGACTGGTTGCATA
ATGGTCATCGGATTGCGTATGACAAGCGTGTCCATCAAATCGGTTCCAAT
TTGCATATCGAGGCGGTGCGGCGCACGGAGGATGTTGGCAACTATGTTTG
CATCGCGACAAATTTGGCCAGCGGCGCCAGGGAGGCGTCTCCGCCCGCCA
AACTGAGCGTGATATATCTTGAATCGGCCAGTGTTCAGCTGCTGGGCAGC
AATCGCAACGAGCTGCTGCTCAAGTGCCACGTGGAGGGCGCCTCAGGAGA
TTTGGAACCGCTAGAGATCGAATGGTATCGCAACAGCGAGAAACTTAGCA
CCTGGAAGAACGTCCAGCTGGATCAGCATCGCCTGATAATCCGACAGCCG
GGAAGCGAGGACGATGGCCTGTACCGCTGCACCGCCTCCAATGCGGCGGG
TCGAGTGATGAGCAAGCAGGGCTATGTCTACCAGTCCAGTGTGAAGTGCC
TGCCCCGACTTCCTAGGCGCAAGAACGAAAAGATGATGGAGTCCTGGGAC
AAACAGACCTTCCTGTGCCGCGGTAAGCGCGGTGGAGCTGCTGGACTAGA
GGCACTACCCGCCGCTCCCGAGGATCTGCGCATTGTGCAAGGACCCATTG
GTCAGTCGATTATCAAGGAGGGTGAGCCCACGGCTTTGACCTGTCTGTAT
GAACTGCCCGACGAGCTGAAGAACCAGCGCATTCAACTCCGTTGGCGCAA
AGATGGCAAACTTTTGCGTCAAGTGGAACTGGGTGGCTCGGCGCCCATTC
CAGGTCACTCCTTCGATTCCGGCAAGGATGCTCTGTTGCGTGAGGACGCC
CGTCTAGTGCTGCACAAGCAGAATGGCACCCTAAGCTTTGCCAGCATTAT
TGCCAGTGATGCGGGTCAGTACCAGTGTCAGTTGCAGCTAGAAGCTCATG
CTCCGATTAACTCATCTCCTGGCATCTTGGAGGTCATCGAGCAGCTAAAG
TTTGTTCCTCAGCCCACGTCCAAGAATTTGGAGCTGGATGCAGTGGTGGC
CAAGGTTCACTGCAAGGCGCAGGGCACTCCAACGCCGCAGGTGCAATGGG
TTAGGGATGGGGAAAATACCACTTTACCCGACCATGTAGAAGTGGATGCC
AATGGAACACTGATTTTCAGAAACGTTAACTCGGAACATCGCGGCAACTA
CACTTGCTTGGCCACCAACAGCCAAGGACAGATAAATGCCACTGTGGCTA
TAAATGTGGTGGTCACTCCCAAATTTAGTGTGCCCCCAGTGGGACCCATC
GAGACTTCGGAGCAGGGCACCGTGGTGATGCATTGCCAGGCGATTGGGGA
CCCCAAGCCGACAATTCAGTGGGACAAGGATCTAAAGTATCTGAGTGAGA
ACAATACGGACCGCGAAAGATTTAGGTTCCTGGAGAACGGCACTCTGGAG
ATACGGAATGTCCAGGTGGAGGACGAGGGTAGCTACGGCTGCACAATTGG
AAATAGTGCAGGACTCAAGCGAGAGGATGTCCAGTTGGTAGTGAAGACAA
CCGGTGACGGTTTCGCTCCAGAGGAATCCGGAGGTGATGGCTTCCTGGTC
ACCCGAGCTGTACTGATCACCATGACGGTGGCCCTGGCCTACATAGTGCT
CGTGGTGGGCCTGATGCTGTGGTGTCGCTATCGCCGTCAAGCCAGAAAAG
CCCGTTTAAACGATCTGAGCACAAAGGAAGCTGGCGGGGATCAGCCGGAT
GTTGCTGGCAATGGCAAAGGCTCCGAGCAGGAGCCCTGCCTGTCTAAGCA
GCACAATGGCCACAGCAAATCCAGATCCAAGTCCAGTGGAGATGCCCAGA
AATCCGATGACACAGCCTGCAGCCAGCAGTCGAGGGCCTCAAAGAAATCG
GCACATATTTACGAGCAACTGGCTCTGCCAAGATCCGGGCTCAGTGAACT
CATACAAATTGGACGCGGCGAGTTTGGGGATGTGTTTGTGGGCAAACTTA
AGGCTACCTTAGTCACCTCGCCCTCGGACAAGGATGCGGATACGGAAAAG
CAGCACAGCAACAGTGAAAATGGCAGTGGAGGCAGCGGAAGTGGAAGCAC
CACGCTAAGTACTCTAAATGAGAAGCGTCGCTCCAAGACCTCCATGGACG
ACATTGAGGAGATCAAGGAGGAGGAGCAGGATCAGCACAATCAATCGGGT
CTCGAGCAGCTCGTTCTGGTCAAAGCCCTGAATAAAGTGAAGGATGAACA
GGCCTGCCAGGAGTTTCGACGACAGTTAGATCTGCTGCGCGCCATCTCGC
ACAAGGGAGTAGTACGTCTGTTTGGCCTGTGTCGCGAAAAGGATCCGCAC
TACATGGTGCTGGAGTACACGGATTGGGGCGATCTCAAGCAGTTCCTGCT
GGCCACCGCCGGAAAAGTGAACACTGCCACCGCGGGCAGCTCCTCACCGC
CGCCACTCACCACCAGTCAGGTTTTGGCCGTCGCCTATCAAATTGCCCGA
GGAATGGACGCCATCTACAGAGCTCGCTTCACCCATAGGGATCTGGCCAC
TCGCAACTGCGTAATTTCCAGTGAGTTTATAGTGAAGGTATCCTATCCGG
CTCTCTGCAAGGACAAGTATAGCCGCGAGTACCACAAACACCGCAACACG
CTGCTCCCGATCCGCTGGCTGGCGCCCGAGTGCATCCAGGAAGACGAGTA
CACCACCAAGAGCGACATCTTTGCCTACGGTGTGGTGGTGTGGGAGCTCT
TCAACCAGGCCACCAAGCTGCCCCACGAGGAGCTGACCAACGAGCAGGTG
GTGCAGCGTTCCCAGGCGGGCTCCTTGGAGTGGTCAGTGGCCGAGGCGAC
GCCCGATAGCCTGCGAGAGATATTGCTGTCCTGTTGGGTGTCCAATCCGA
AGGAGCGACCTTCGTTCAGCCAACTGGGAGCTGCTCTCAGCAAGGCGATG
CAGAGTGCCGAGAAGTGAAAGCTTTCTAGACCAT

BS17836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
otk-RA 3102 CG8967-PA 1..3102 17..3118 15510 100 Plus
otk-RB 3060 CG8967-PB 1..3009 17..3025 15045 100 Plus
otk2-RA 1302 CG8964-PA 655..1006 1349..1700 380 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
otk-RA 4671 CG8967-RA 918..4019 17..3118 15510 100 Plus
otk-RB 4769 CG8967-RB 918..3926 17..3025 15045 100 Plus
otk-RB 4769 CG8967-RB 4024..4117 3025..3118 470 100 Plus
otk2-RA 1968 CG8964-RA 1039..1390 1349..1700 380 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12002784..12004218 2689..1255 7175 100 Minus
2R 25286936 2R 12005188..12006078 1256..366 4455 100 Minus
2R 25286936 2R 12002387..12002725 3025..2687 1695 100 Minus
2R 25286936 2R 12013759..12013921 365..203 815 100 Minus
2R 25286936 2R 12013988..12014125 205..68 690 100 Minus
2R 25286936 2R 12002125..12002218 3118..3025 470 100 Minus
2R 25286936 2R 12023724..12024075 1700..1349 380 73.9 Minus
2R 25286936 2R 12018878..12018929 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:35:34 has no hits.

BS17836.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:33 Download gff for BS17836.complete
Subject Subject Range Query Range Percent Splice Strand
otk-RA 896..3996 17..3117 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:04 Download gff for BS17836.complete
Subject Subject Range Query Range Percent Splice Strand
otk-RA 918..4018 17..3117 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:15 Download gff for BS17836.complete
Subject Subject Range Query Range Percent Splice Strand
otk-RA 918..4018 17..3117 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:15 Download gff for BS17836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12013759..12013920 204..365 100 <- Minus
2R 12013990..12014124 69..203 100 <- Minus
2R 12018878..12018929 17..68 100   Minus
2R 12002387..12002723 2689..3025 100 <- Minus
2R 12002126..12002217 3026..3117 100 <- Minus
2R 12002785..12004217 1256..2688 100 <- Minus
2R 12005189..12006078 366..1255 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:04 Download gff for BS17836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7906383..7906434 17..68 100   Minus
arm_2R 7889631..7889722 3026..3117 100 <- Minus
arm_2R 7889892..7890228 2689..3025 100 <- Minus
arm_2R 7890290..7891722 1256..2688 100 <- Minus
arm_2R 7892694..7893583 366..1255 100 <- Minus
arm_2R 7901264..7901425 204..365 100 <- Minus
arm_2R 7901495..7901629 69..203 100 <- Minus

BS17836.pep Sequence

Translation from 16 to 3117

> BS17836.pep
MTARMISICGLVMALMMASVLASSSRFQRVPQSQSVVENESVKFECESTD
SYSELHYDWLHNGHRIAYDKRVHQIGSNLHIEAVRRTEDVGNYVCIATNL
ASGAREASPPAKLSVIYLESASVQLLGSNRNELLLKCHVEGASGDLEPLE
IEWYRNSEKLSTWKNVQLDQHRLIIRQPGSEDDGLYRCTASNAAGRVMSK
QGYVYQSSVKCLPRLPRRKNEKMMESWDKQTFLCRGKRGGAAGLEALPAA
PEDLRIVQGPIGQSIIKEGEPTALTCLYELPDELKNQRIQLRWRKDGKLL
RQVELGGSAPIPGHSFDSGKDALLREDARLVLHKQNGTLSFASIIASDAG
QYQCQLQLEAHAPINSSPGILEVIEQLKFVPQPTSKNLELDAVVAKVHCK
AQGTPTPQVQWVRDGENTTLPDHVEVDANGTLIFRNVNSEHRGNYTCLAT
NSQGQINATVAINVVVTPKFSVPPVGPIETSEQGTVVMHCQAIGDPKPTI
QWDKDLKYLSENNTDRERFRFLENGTLEIRNVQVEDEGSYGCTIGNSAGL
KREDVQLVVKTTGDGFAPEESGGDGFLVTRAVLITMTVALAYIVLVVGLM
LWCRYRRQARKARLNDLSTKEAGGDQPDVAGNGKGSEQEPCLSKQHNGHS
KSRSKSSGDAQKSDDTACSQQSRASKKSAHIYEQLALPRSGLSELIQIGR
GEFGDVFVGKLKATLVTSPSDKDADTEKQHSNSENGSGGSGSGSTTLSTL
NEKRRSKTSMDDIEEIKEEEQDQHNQSGLEQLVLVKALNKVKDEQACQEF
RRQLDLLRAISHKGVVRLFGLCREKDPHYMVLEYTDWGDLKQFLLATAGK
VNTATAGSSSPPPLTTSQVLAVAYQIARGMDAIYRARFTHRDLATRNCVI
SSEFIVKVSYPALCKDKYSREYHKHRNTLLPIRWLAPECIQEDEYTTKSD
IFAYGVVVWELFNQATKLPHEELTNEQVVQRSQAGSLEWSVAEATPDSLR
EILLSCWVSNPKERPSFSQLGAALSKAMQSAEK*

BS17836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
otk-PA 1033 CG8967-PA 1..1033 1..1033 5346 100 Plus
otk-PB 1019 CG8967-PB 1..1003 1..1003 5193 100 Plus
otk2-PA 433 CG8964-PA 25..431 246..665 1064 53.6 Plus
Ror-PA 685 CG4926-PA 356..670 717..1024 386 28.2 Plus
Nrk-PA 724 CG4007-PA 471..719 782..1032 360 33.3 Plus