Clone Sequence Records
BS17837.complete Sequence
3431 bp assembled on 2009-12-08
GenBank Submission: KX804868
> BS17837.complete
GAAGTTATCAGTCGACATGTACAACGCGAGATCGCGTGGCAGCGCTGCCA
ACGAGGGGATTTCCCCCAAAAGAATAGTCACCATCGGCTCTCTGCTCCTA
GTCCTTGGTTTAAACCAGGTGGCGTCCATGTCGCTGGATCGCCTGGCTCT
CGAGAGGAACGAGCTGCCAGCAGATCAACAGCAGCAACAACAGCAGGATG
TTCTTGTCGACAATATGAAGCTCACCTCCATACCATCCGCCGACTCATCG
GACATGTATATGCTGGTGCCCGATACGGTGGCCAGTCAACTGGAAGACAC
CGAGCATGTCAATCGCAACTCCATCGAGGCCGATCCCGAATCGGACCCCT
CCGGCTCATCCTCCTCCGACATGCTGATGCTGGAGAGTGATTCCAGCCCG
GCTATGCAACTCGTAGAACTGCCCAGCGACATTACGGTAGCCGAATCTCA
GCCAGAAACGGAGCACGACACGGAGAACGATCAGCAGCAGCCCGAGTCTA
TCGAGGAACATGTGGTGCTGATGAAACCAGCTAGCCAGGAGGCACAGTTG
GAGCAGACGGTGGACTTGGCCACCGAAGCGGCACCAGTTCCATTAAACGA
CGAATTGCCAGAGGATGAGGAATCTCCTGCTGCCACCGAGAGTGCCGTAG
AGGAATTGGAAAAGGAATCCGAAGCGGCCATGGATGATCAAGTGCCCGAG
GAATCGGAAATTCAGCCGGAACAGGTGCAACCAGGGGAATATCAATCAGA
ATCTGATGGTGAACAGGCGGAAACGAAGCCAGAGATTGAAGCTCAGCCAG
AAGTGGAAGCTCAGCCAGAAGCGGAAGCTCAGCCAGAAGCGGAGCCCCAA
CTAGAAGTGGAGCCACAACCAGAAGTTGAGTCCCAGCCTGAAGTGGAATC
CCAGCCAGAAGTAGAAGCCCAACCTGAAGTGGAACCTCAGTCAGAAGTGG
AATCCCAGCCTGAGGCTGAATCTCATTCAGAACCAGAAACACAGGCAGAA
GTGGAAGCCCAGCCTGAAGTGGAATCCCTACCAGAGGCTGAATCCCAGCC
AGAAGCAGAGTCCCAGCCAGAAAGGGAACCCGAAGTTGAGGCTGAGAAAA
TCAGTGATAACGAGGTGGACACCACGGAGGCATCGCTGATGGAAACCCTG
GTCGAGGGCATTGAAGATGGTCTAACTGCCGCCATGGACAACCTGGTGCC
CGAAGAATTGGCAGAAGCCAGTGATAAGCAGGAAACGGAGCTGGAAAGCG
AAGATCAGCAGTCCCCTGTCACAGAAGCCATAGAAGAGCAGGCAGTTCCC
GAAATTGAGCAGGAAAAGGAAAAGGAACCCGAGCAGATAACCTTGGCCGA
TGAAACCGAGCAGGATAGTGCCCAGCCTTCAAATGAAGAGCCAGTCGAGA
TTGCCCCAGAGCAACACACTGAAGCGGAGATTGCTCCAGCTAAAATTCCA
GAGGAAGGCAAGCCTGAGGAGGAAGTCCAAGTGGAGGAGGAGTCTAAGCC
AGTTGAAGAATCTAAGCCCGAGGAGGAAATCAAGCAACAGGAAGATGCCA
AGCCAGAGGAGGATGACCAGAATTATGCTGAGACTCAACCAGCTGTCACC
GAAGTGAAACCAGAGGAAACTCCTGCTGATATTCCTGTCGAGATCCCTGC
TGAGGTTCCTGCCGAAATTCCTGCTGAGATCCCTGCAGAAGTTCCTGCTG
AAATCCCTGCCGAGAGTCCTGCTGAGATCGCTGCCGAAGTTCCTGCCGAG
ATCCCTGCTGAAATCCCTGCTGAGATCCCTGCTGAAACTCCTGCTGAAAC
CCATGCTGAAATCCCTGCTGATGTTCCAGCTCAAGTTGTAGCTGAAGCTC
CAGCGGAAACCCCAGCTGAAACCCCAGCAGAAGTTCCTGCTGAAATCCCA
TCTAAAGTCCAAGATGAAATTCAATCCGACTCCACCCAAGCCGAACCCCA
AGTAGAGAAGGAAGCCCAGCAGCCGGAGAAGGAAACCAAGCCCCTGGAAT
CGTCCCTGCTGACCACCATCATTCCCATGGTGATGCCCCAACCCCAGGTG
CCATCGCAACCGCTTCAGGTCCAGGATAGTGTGCTAAACTATGTCAACGC
CTCGTTCATGCAGCAGCAGCCATCGGAAACGGATCTGCCCAAGACGGAGG
AGGAGTCACCATTCAATGCTCATCTGCGCCGCTATGATGGCGCCCAAGTG
TGGCGCATCGTGGTCCAGACCGACAAGGATAAGCGAATGGCCGACGAACT
GCAGTCCAAATATGATGGCCAACTGTGGAAAGAGGTCAAGCAGGAGGTGG
ACTATCTGCTGAAGCCACAAGTTTTGGCCGCCGCCGAACGTCACATTCGC
GCCGCTAATCTTTCCCGGATCGTTCTGATCGACAATTTGCAGCGTGTCAT
TGAAAAGGAGAATCCGCCAGCGGAGAAGATTGCCGAGCTGCAGAACCGCA
AGGGACATCGCCTCACCTGGCAGGCCTACCATCGTCTGGAGGACATTCAC
GGCTTCATTGACTATATGGCTAAAACCTATCCGGATATTTGCTCCACTGA
GATCATTGGCTACTCGGTGGAGAAGCGACCACTTAAGATTCTCAAAATTT
CCAATGGCAATGCCCGTAATCCTGGCATCTGGATCGATGGTGGCATGCAC
GCACGCGAATGGATCAGTCCGGCCACGGTCACCTACATTGCCAACCAGCT
GGTCGAGGGTTGGGAGGATCTGCCCGAGCACATGCGCAGCATCAACTGGT
ACATCCATCCGGTGGCCAATCCCGATGGCTATGAGTATTCTCACACAACC
GATCGACTCTGGCGCAAGAATATGCGTGCCCATGGTCGCCAGTGCCCCGG
TGTGGATCTGAACCGTAACTTTGGCTATAAGTGGGGCGGCAAGGGCACCT
CGGCCAGTCCCTGCTCGCAGACATATCGCGGCAGCAAGGCCTTCTCCGAG
CCGGAGACCTTCTACATCTCCAAGTTCATCAGCGGCTTTCCGCGCGAGAC
CTTCCAGGCGTACCTCTCGTTCCACAGCTATGGCCAGTACATTCTGTATC
CTTGGGGCTACGACTACCAGCTAACCCAGGACCGTGCCGATCTCGATCGT
GTGGCACGACAGGCCGGAACGAGCATCACCAAGTCGACGGGCGTGAAGTA
TACGGTGGGATCCTCCGCCACAACTTTGTATCCCGCCGCCGGTGGCTCCG
ATGATTGGGCCAAGGGCATTGCGGGCATCAAGTATGCCTACACCATTGAA
ATGGGCGACACCGGACGGTATGGCTTCGTCCTGCCCGCCCGATTCATCCA
GTACAACGGCAAGGATGGTGTGACATTCGCCGATACCGTGGCCAGGGCCA
TTGCCCAGGGACGCGGAAAATCGGTGGCCAGGAACAGCAGTGGCAGCCGG
AGGCGTGGCCACTAGAAGCTTTCTAGACCAT
BS17837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-RA | 3399 | CG3108-PA | 1..3399 | 17..3415 | 16995 | 100 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1600..1757 | 1664..1821 | 355 | 81.6 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1648..1805 | 1616..1773 | 355 | 81.6 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1605..1769 | 1657..1821 | 315 | 79.4 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1641..1805 | 1621..1785 | 315 | 79.4 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 781..984 | 869..1072 | 300 | 76.5 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 853..1056 | 797..1000 | 300 | 76.5 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1605..1805 | 1693..1893 | 285 | 76.1 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1677..1877 | 1621..1821 | 285 | 76.1 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 772..930 | 824..982 | 255 | 77.4 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 808..966 | 788..946 | 255 | 77.4 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1606..1727 | 1706..1827 | 220 | 78.7 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1690..1811 | 1622..1743 | 220 | 78.7 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 778..966 | 884..1072 | 210 | 74.1 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 868..1056 | 794..982 | 210 | 74.1 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1605..1709 | 1717..1821 | 210 | 80 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1701..1805 | 1621..1725 | 210 | 80 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 761..953 | 903..1095 | 200 | 73.6 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 783..1002 | 853..1072 | 200 | 72.7 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 837..1056 | 799..1018 | 200 | 72.7 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 887..1079 | 777..969 | 200 | 73.6 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1616..1771 | 1740..1895 | 195 | 75 | Plus |
| CG3108-RA | 3399 | CG3108-PA | 1724..1879 | 1632..1787 | 195 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-RA | 3578 | CG3108-RA | 39..3437 | 17..3415 | 16995 | 100 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1638..1795 | 1664..1821 | 355 | 81.6 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1686..1843 | 1616..1773 | 355 | 81.6 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1643..1807 | 1657..1821 | 315 | 79.4 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1679..1843 | 1621..1785 | 315 | 79.4 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 819..1022 | 869..1072 | 300 | 76.5 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 891..1094 | 797..1000 | 300 | 76.5 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1643..1843 | 1693..1893 | 285 | 76.1 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1715..1915 | 1621..1821 | 285 | 76.1 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 810..968 | 824..982 | 255 | 77.4 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 846..1004 | 788..946 | 255 | 77.4 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1644..1765 | 1706..1827 | 220 | 78.7 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1728..1849 | 1622..1743 | 220 | 78.7 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 816..1004 | 884..1072 | 210 | 74.1 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 906..1094 | 794..982 | 210 | 74.1 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1643..1747 | 1717..1821 | 210 | 80 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1739..1843 | 1621..1725 | 210 | 80 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 799..991 | 903..1095 | 200 | 73.6 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 821..1040 | 853..1072 | 200 | 72.7 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 875..1094 | 799..1018 | 200 | 72.7 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 925..1117 | 777..969 | 200 | 73.6 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1654..1809 | 1740..1895 | 195 | 75 | Plus |
| CG3108-RA | 3578 | CG3108-RA | 1762..1917 | 1632..1787 | 195 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5779335..5781582 | 2264..17 | 11240 | 100 | Minus |
| X | 23542271 | X | 5777701..5778233 | 3121..2589 | 2650 | 99.8 | Minus |
| X | 23542271 | X | 5777336..5777630 | 3415..3121 | 1475 | 100 | Minus |
| X | 23542271 | X | 5779071..5779261 | 2454..2264 | 955 | 100 | Minus |
| X | 23542271 | X | 5778291..5778433 | 2595..2453 | 715 | 100 | Minus |
| X | 23542271 | X | 5779778..5779935 | 1773..1616 | 355 | 81.6 | Minus |
| X | 23542271 | X | 5779826..5779983 | 1821..1664 | 355 | 81.6 | Minus |
| X | 23542271 | X | 5779778..5779942 | 1785..1621 | 315 | 79.4 | Minus |
| X | 23542271 | X | 5779814..5779978 | 1821..1657 | 315 | 79.4 | Minus |
| X | 23542271 | X | 5780527..5780730 | 1000..797 | 300 | 76.5 | Minus |
| X | 23542271 | X | 5780599..5780802 | 1072..869 | 300 | 76.5 | Minus |
| X | 23542271 | X | 5779706..5779906 | 1821..1621 | 285 | 76.1 | Minus |
| X | 23542271 | X | 5779778..5779978 | 1893..1693 | 285 | 76.1 | Minus |
| X | 23542271 | X | 5780653..5780811 | 982..824 | 255 | 77.4 | Minus |
| X | 23542271 | X | 5780617..5780775 | 946..788 | 255 | 77.4 | Minus |
| X | 23542271 | X | 5779772..5779893 | 1743..1622 | 220 | 78.7 | Minus |
| X | 23542271 | X | 5779856..5779977 | 1827..1706 | 220 | 78.7 | Minus |
| X | 23542271 | X | 5779778..5779882 | 1725..1621 | 210 | 80 | Minus |
| X | 23542271 | X | 5779874..5779978 | 1821..1717 | 210 | 80 | Minus |
| X | 23542271 | X | 5780527..5780715 | 982..794 | 210 | 74.1 | Minus |
| X | 23542271 | X | 5780617..5780805 | 1072..884 | 210 | 74.1 | Minus |
| X | 23542271 | X | 5780581..5780800 | 1072..853 | 200 | 72.7 | Minus |
| X | 23542271 | X | 5780504..5780696 | 969..777 | 200 | 73.6 | Minus |
| X | 23542271 | X | 5780527..5780746 | 1018..799 | 200 | 72.7 | Minus |
| X | 23542271 | X | 5780630..5780822 | 1095..903 | 200 | 73.6 | Minus |
| X | 23542271 | X | 5779704..5779859 | 1787..1632 | 195 | 75 | Minus |
| X | 23542271 | X | 5779812..5779967 | 1895..1740 | 195 | 75 | Minus |
Blast to na_te.dros performed 2014-11-28 01:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2989 | 1849..1627 | 252 | 58.4 | Minus |
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 806..887 | 1643..1724 | 149 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1134 | 168..198 | 121 | 90.6 | Plus |
BS17837.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:04 Download gff for
BS17837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 35..3433 | 17..3415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:16 Download gff for
BS17837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 39..3437 | 17..3415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:03 Download gff for
BS17837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 35..3433 | 17..3415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:03 Download gff for
BS17837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 39..3437 | 17..3415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:03 Download gff for
BS17837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5777336..5777629 | 3122..3415 | 100 | <- | Minus |
| X | 5777701..5778226 | 2596..3121 | 100 | <- | Minus |
| X | 5778291..5778432 | 2454..2595 | 100 | <- | Minus |
| X | 5779072..5779260 | 2265..2453 | 100 | <- | Minus |
| X | 5779335..5781582 | 17..2264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:16 Download gff for
BS17837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5671369..5671662 | 3122..3415 | 100 | <- | Minus |
| arm_X | 5671734..5672259 | 2596..3121 | 100 | <- | Minus |
| arm_X | 5672324..5672465 | 2454..2595 | 100 | <- | Minus |
| arm_X | 5673105..5673293 | 2265..2453 | 100 | <- | Minus |
| arm_X | 5673368..5675615 | 17..2264 | 100 | | Minus |
BS17837.3prime Sequence
855 bp (828 high quality bases) assembled on 2007-05-30
> BS17837.3prime
ATGGTCTAGAAAGCTTCTAGTGGCCACGCCTCCGGCTGCCACTGCTGTTC
CTGGCCACCGATTTTCCGCGTCCCTGGGCAATGGCCCTGGCCACGGTATC
GGCGAATGTCACACCATCCTTGCCGTTGTACTGGATGAATCGGGCGGGCA
GGACGAAGCCATACCGTCCGGTGTCGCCCATTTCAATGGTGTAGGCATAC
TTGATGCCCGCAATGCCCTTGGCCCAATCATCGGAGCCACCGGCGGCGGG
ATACAAAGTTGTGGCGGAGGATCCCACCGTATACTTCACGCCCGTCGACT
TGGTGATGCTCGTTCCGGCCTGTCGTGCCACACGATCGAGATCGGCACGG
TCCTGGGTTAGCTGGTAGTCGTAGCCCCAAGGATACAGAATGTACTGGCC
ATAGCTGTGGAACGAGAGGTACGCCTGGAAGGTCTCGCGCGGAAAGCCGC
TGATGAACTTGGAGATGTAGAAGGTCTCCGGCTCGGAGAAGGCCTTGCTG
CCGCGATATGTCTGCGAGCAGGGACTGGCCGAGGTGCCCTTGCCGCCCCA
CTTATAGCCAAAGTTACGGTTCAGATCCACACCGGGGCACTGGCGACCAT
GGGCACGCATATTCTTGCGCCAGAGTCGATCGGTTGTGTGAGAATACTCA
TAGCCATCGGGATTGGCCACCGGATGGATGTACCAGTTGATGCTGCGCAT
GTGCTCGGGCAGATCCTCCCAACCCTCGACCAGCTGGTTGGCAATGTAGG
TGACCGTGGCCGGACTGATCCATTCGCGTGCGTGCATGCCACCATCGATC
CAGATGCCAGGATTACGGGCATTGCCATTGGAAATTTTGAGAATCTTAAG
TGGTC
BS17837.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-PA | 3399 | CG3108-RA | 2561..3399 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-RA | 3578 | CG3108-RA | 2599..3437 | 855..17 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5777701..5778233 | 311..843 | 2650 | 99.8 | Plus |
| X | 23542271 | X | 5777336..5777630 | 17..311 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:56:52 has no hits.
BS17837.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:39 Download gff for
BS17837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-PA | 2561..3399 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:18 Download gff for
BS17837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 2599..3441 | 12..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:27 Download gff for
BS17837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 2599..3441 | 12..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:27 Download gff for
BS17837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5777332..5777629 | 12..310 | 98 | <- | Plus |
| X | 5777701..5778226 | 311..836 | 100 | <- | Plus |
| X | 5778291..5778309 | 837..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:18 Download gff for
BS17837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5671365..5671662 | 12..310 | 98 | <- | Plus |
| arm_X | 5671734..5672259 | 311..836 | 100 | <- | Plus |
| arm_X | 5672324..5672342 | 837..855 | 100 | | Plus |
BS17837.5prime Sequence
863 bp (704 high quality bases) assembled on 2007-05-30
> BS17837.5prime
GAAGTTATCACTCGACATGTACAACGCGAGATCGCGTGGCAGCGCTGCCA
ACGAGGGGATTTCCCCCAAAAGAATAGTCACCATCGGCTCTCTGCTCCTA
GTCCTTGGTTTAAACCAGGTGGCGTCCATGTCGCTGGATCGCCTGGCTCT
CGAGAGGAACGAGCTGCCAGCAGATCAACAGCAGCAACAACAGCAGGATG
TTCTTGTCGACAATATGAAGCTCACCTCCATACCATCCGCCGACTCATCG
GACATGTATATGCTGGTGCCCGATACGGTGGCCAGTCAACTGGAAGACAC
CGAGCATGTCAATCGCAACTCCATCGAGGCCGATCCCGAATCGGACCCCT
CCGGCTCATCCTCCTCCGACATGCTGATGCTGGAGAGTGATTCCAGCCCG
GCTATGCAACTCGTAGAACTGCCCAGCGACATTACGGTAGCCGAATCTCA
GCCAGAAACGGAGCACGACACGGAGAACGATCAGCAGCAGCCCGAGTCTA
TCGAGGAACATGTGGTGCTGATGAAACCAGCTAGCCAGGAGGCACAGTTG
GAGCAGACGGTGGACTTGGCCACCGAAGCGGCACCAGTTCCATTAAACGA
CGAATTGCCAGAGGATGAGGAATCTCCTGCTGCCACCGAGAGTGCCGTAG
AGGAATTGGAAAAGGAATCCGAAGCGGCCATGGATGATCAAGTGCCCGAG
GAATCGGAAATTCAGCCGGAACAGGTGCAACCAGGGGAATATCAATCAGA
ATCTGATGGTGAACAGGCGGAAACGAAGCCAGAGATTGAAGCTCAGCCAG
AAGTGGAAGCTCAGCCAGAAGCGGAAGCTCAGCCAGAAGCGGAGCCCCAA
CTAGAAGTGGAGC
BS17837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-PA | 3399 | CG3108-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-RA | 3578 | CG3108-RA | 39..885 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5780736..5781582 | 863..17 | 4235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1103..1134 | 168..198 | 121 | 90.6 | Plus |
BS17837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:44 Download gff for
BS17837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:08 Download gff for
BS17837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 34..885 | 11..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:28 Download gff for
BS17837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3108-RA | 34..885 | 11..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:28 Download gff for
BS17837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5780736..5781587 | 11..863 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:08 Download gff for
BS17837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5674769..5675620 | 11..863 | 99 | | Minus |
BS17837.pep Sequence
Translation from 16 to 3414
> BS17837.pep
MYNARSRGSAANEGISPKRIVTIGSLLLVLGLNQVASMSLDRLALERNEL
PADQQQQQQQDVLVDNMKLTSIPSADSSDMYMLVPDTVASQLEDTEHVNR
NSIEADPESDPSGSSSSDMLMLESDSSPAMQLVELPSDITVAESQPETEH
DTENDQQQPESIEEHVVLMKPASQEAQLEQTVDLATEAAPVPLNDELPED
EESPAATESAVEELEKESEAAMDDQVPEESEIQPEQVQPGEYQSESDGEQ
AETKPEIEAQPEVEAQPEAEAQPEAEPQLEVEPQPEVESQPEVESQPEVE
AQPEVEPQSEVESQPEAESHSEPETQAEVEAQPEVESLPEAESQPEAESQ
PEREPEVEAEKISDNEVDTTEASLMETLVEGIEDGLTAAMDNLVPEELAE
ASDKQETELESEDQQSPVTEAIEEQAVPEIEQEKEKEPEQITLADETEQD
SAQPSNEEPVEIAPEQHTEAEIAPAKIPEEGKPEEEVQVEEESKPVEESK
PEEEIKQQEDAKPEEDDQNYAETQPAVTEVKPEETPADIPVEIPAEVPAE
IPAEIPAEVPAEIPAESPAEIAAEVPAEIPAEIPAEIPAETPAETHAEIP
ADVPAQVVAEAPAETPAETPAEVPAEIPSKVQDEIQSDSTQAEPQVEKEA
QQPEKETKPLESSLLTTIIPMVMPQPQVPSQPLQVQDSVLNYVNASFMQQ
QPSETDLPKTEEESPFNAHLRRYDGAQVWRIVVQTDKDKRMADELQSKYD
GQLWKEVKQEVDYLLKPQVLAAAERHIRAANLSRIVLIDNLQRVIEKENP
PAEKIAELQNRKGHRLTWQAYHRLEDIHGFIDYMAKTYPDICSTEIIGYS
VEKRPLKILKISNGNARNPGIWIDGGMHAREWISPATVTYIANQLVEGWE
DLPEHMRSINWYIHPVANPDGYEYSHTTDRLWRKNMRAHGRQCPGVDLNR
NFGYKWGGKGTSASPCSQTYRGSKAFSEPETFYISKFISGFPRETFQAYL
SFHSYGQYILYPWGYDYQLTQDRADLDRVARQAGTSITKSTGVKYTVGSS
ATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYGFVLPARFIQYNGKD
GVTFADTVARAIAQGRGKSVARNSSGSRRRGH*
BS17837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3108-PA | 1132 | CG3108-PA | 1..1132 | 1..1132 | 5813 | 100 | Plus |
| CG3097-PA | 445 | CG3097-PA | 17..439 | 693..1112 | 854 | 42.8 | Plus |
| CG8560-PB | 418 | CG8560-PB | 18..388 | 720..1083 | 626 | 36.3 | Plus |
| CG8560-PA | 418 | CG8560-PA | 18..388 | 720..1083 | 626 | 36.3 | Plus |
| CG4017-PA | 424 | CG4017-PA | 64..423 | 762..1120 | 623 | 36.7 | Plus |
