Clone Sequence Records
BS17838.3prime Sequence
822 bp (820 high quality bases) assembled on 2007-05-30
> BS17838.3prime
ATGGTCTAGAAAGCTTTTAATTTTTTTTGGTATGTAACTCGATCCAGTTC
GCAAAGTGAATGACGTTTGTGTAGACAGTAGGGCCAAAGCAGTGAACCGC
ACCATAGCTGACCACCCCGAAGAGTATCACTCTTCTTTCCGATCCAATCC
GTACCCTCGCCGTTAGGGGTCCACCCGAATCACCCTGGCAAGTGGAACCA
GTGCTGCTAGCTACGCAGATGTGGCTTTTGTCCAGTTGTTTGCCAAAGAC
TTGGGCACAGTAGCTGAGGTGGTGATGCGTCAAGGATGCTTGCTGCAGGA
CGGGGCTGTTTATGCGGGATTCAGTGCGTCCCCATCCGGTGGTATTGAAC
TTGACAAGATTTTTCAGTATGTTCGACGACCAGGTGTAGTCTCCCATTAG
CAAACAGATCGATCTTATGTTATCTCCATACTGTACTGTTGTCTCTAGTC
TGAGCAGAGCTATGTCATTCTTACGAAAGTTAGTGTAATGACTGGGCACA
TAAGTTCTGGTCACATTGATTTCCCTGGGCCGTGGAATGCAGCCATAACT
GGAGCAATCGACGGCCTGATTCACGTCGTAATCACCCAAACGCACTGTCA
ATTGACTTTTGGTTTCACTTTTACAGTGGGCAGCCGTCAGAACGTATCGT
GGCGTGATGAGCGATCCTCCGCACTTCATCATCCCACGTTCGATGATTAT
CACCATCCAGGGATTGGAGAATAAGTCCGCTGGCTTGCCATTGATCACAC
GATATAGACCCGGCTCAGATCTGGCTGTAACGCACTGGGGATCTAGTAAA
TGTGGTTGGCCCTGTACCTTTA
BS17838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-PA | 855 | CG30287-RA | 50..855 | 822..17 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-RA | 955 | CG30287-RA | 64..869 | 822..17 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21536980..21537392 | 17..429 | 2050 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21537436..21537615 | 420..599 | 885 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21537778..21537952 | 648..822 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 21537667..21537716 | 599..648 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 13:56:35 has no hits.
BS17838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:49 Download gff for
BS17838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-PA | 51..855 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:32 Download gff for
BS17838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 65..873 | 14..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:15:54 Download gff for
BS17838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 65..873 | 14..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:15:54 Download gff for
BS17838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21537779..21537951 | 649..821 | 100 | | Plus |
| 2R | 21536976..21537386 | 14..423 | 99 | <- | Plus |
| 2R | 21537440..21537615 | 424..599 | 100 | <- | Plus |
| 2R | 21537668..21537716 | 600..648 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:32 Download gff for
BS17838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17424481..17424891 | 14..423 | 99 | <- | Plus |
| arm_2R | 17424945..17425120 | 424..599 | 100 | <- | Plus |
| arm_2R | 17425173..17425221 | 600..648 | 100 | <- | Plus |
| arm_2R | 17425284..17425456 | 649..821 | 100 | | Plus |
BS17838.5prime Sequence
856 bp (755 high quality bases) assembled on 2007-05-30
> BS17838.5prime
GAAGTTATCACTCTACATGAATATAATGGGAGCTGGAGCTGTGCAGCTCC
TCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACAGGGCCAACCACATTTA
CTAGATCCCCAGTGCGTTACAGCCAGATCTGAGCCGGGTCTATATCGTGT
GATCAATGGCAAGCCAGCGGACTTATTCTCCAATCCCTGGATGGTGATAA
TCATCGAACGTGGGATGATGAAGTGCGGAGGATCGCTCATCACGCCACGA
TACGTTCTGACGGCTGCCCACTGTAAAAGTGAAACCAAAAGTCAATTGAC
AGTGCGTTTGGGTGATTACGACGTGAATCAGGCCGTCGATTGCTCCAGTT
ATGGCTGCATTCCACGGCCCAGGGAAATCAATGTGACCAGAACTTATGTG
CCCAGTCATTACACTAACTTTCGTAAGAATGACATAGCTCTGCTCAGACT
AGAGACAACAGTACAGTATGGAGATAACATAAGATCGATCTGTTTGCTAA
TGGGAGACTACACCTGGTCGTCGAACATACTGAAAAATCTTGTCAAGTTC
AATACCACCGGATGGGGACGCACTGAATCCCGCATAAACAGCCCCGTCCT
GCAGCAAGCATCCTTGACGCATCACCACCTCAGCTACTGTGCCCAAGTCT
TTGGCAAACAACTGGACAAAAGCCACATCTGCGTAGCTAGCAGCACTGGT
TCCACTTGCCAGGGTGATTCGGGTGGACCCCTAACGGCGAGGGTACGGAT
TGGATCGGAAAGAAGAGTGATACTCTTCGGGGTGGTCAGCTATGGTGCGG
TTCACTGCTTTGGCCCTACTGTCTACACAAACGTCATTCACTTTGCGAAC
TGGATC
BS17838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-PA | 855 | CG30287-RA | 1..831 | 26..856 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-RA | 955 | CG30287-RA | 6..845 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21537004..21537392 | 856..468 | 1930 | 99.7 | Minus |
| 2R | 25286936 | 2R | 21537778..21538010 | 249..17 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 21537436..21537615 | 477..298 | 885 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21537667..21537716 | 298..249 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:16:48 has no hits.
BS17838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:54 Download gff for
BS17838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-PA | 1..831 | 26..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:34 Download gff for
BS17838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 1..845 | 14..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:58 Download gff for
BS17838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 1..845 | 14..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:58 Download gff for
BS17838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21537004..21537386 | 474..856 | 100 | <- | Minus |
| 2R | 21537440..21537615 | 298..473 | 100 | <- | Minus |
| 2R | 21537668..21537716 | 249..297 | 100 | <- | Minus |
| 2R | 21537779..21538010 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:34 Download gff for
BS17838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17424509..17424891 | 474..856 | 100 | <- | Minus |
| arm_2R | 17424945..17425120 | 298..473 | 100 | <- | Minus |
| arm_2R | 17425173..17425221 | 249..297 | 100 | <- | Minus |
| arm_2R | 17425284..17425515 | 17..248 | 100 | | Minus |
BS17838.complete Sequence
896 bp assembled on 2012-04-25
GenBank Submission: KX805451
> BS17838.complete
GAAGTTATCAGTCGACATGAATATAATGGGAGCTGGAGCTGTGCAGCTCC
TCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACAGGGCCAACCACATTTA
CTAGATCCCCAGTGCGTTACAGCCAGATCTGAGCCGGGTCTATATCGTGT
GATCAATGGCAAGCCAGCGGACTTATTCTCCAATCCCTGGATGGTGATAA
TCATCGAACGTGGGATGATGAAGTGCGGAGGATCGCTCATCACGCCACGA
TACGTTCTGACGGCTGCCCACTGTAAAAGTGAAACCAAAAGTCAATTGAC
AGTGCGTTTGGGTGATTACGACGTGAATCAGGCCGTCGATTGCTCCAGTT
ATGGCTGCATTCCACGGCCCAGGGAAATCAATGTGACCAGAACTTATGTG
CCCAGTCATTACACTAACTTTCGTAAGAATGACATAGCTCTGCTCAGACT
AGAGACAACAGTACAGTATGGAGATAACATAAGATCGATCTGTTTGCTAA
TGGGAGACTACACCTGGTCGTCGAACATACTGAAAAATCTTGTCAAGTTC
AATACCACCGGATGGGGACGCACTGAATCCCGCATAAACAGCCCCGTCCT
GCAGCAAGCATCCTTGACGCATCACCACCTCAGCTACTGTGCCCAAGTCT
TTGGCAAACAACTGGACAAAAGCCACATCTGCGTAGCTAGCAGCACTGGT
TCCACTTGCCAGGGTGATTCGGGTGGACCCCTAACGGCGAGGGTACGGAT
TGGATCGGAAAGAAGAGTGATACTCTTCGGGGTGGTCAGCTATGGTGCGG
TTCACTGCTTTGGCCCTACTGTCTACACAAACGTCATTCACTTTGCGAAC
TGGATCGAGTTACATACCAAAAAAAATTAAAAGCTTTCTAGACCAT
BS17838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-RA | 855 | CG30287-PA | 1..855 | 26..880 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-RA | 955 | CG30287-RA | 6..869 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21536980..21537392 | 880..468 | 2050 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21537778..21538010 | 249..17 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 21537436..21537615 | 477..298 | 885 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21537667..21537716 | 298..249 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:57:33 has no hits.
BS17838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:08 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 1..855 | 26..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:59 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 1..855 | 26..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:16:53 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 6..857 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:51 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 6..857 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:08 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 1..855 | 26..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:18 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 6..857 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:18 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21536992..21537386 | 474..868 | 100 | <- | Minus |
| 2R | 21537440..21537615 | 298..473 | 100 | <- | Minus |
| 2R | 21537668..21537716 | 249..297 | 100 | <- | Minus |
| 2R | 21537779..21538010 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:51 Download gff for
BS17838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17424497..17424891 | 474..868 | 100 | <- | Minus |
| arm_2R | 17424945..17425120 | 298..473 | 100 | <- | Minus |
| arm_2R | 17425173..17425221 | 249..297 | 100 | <- | Minus |
| arm_2R | 17425284..17425515 | 17..248 | 100 | | Minus |
BS17838.pep Sequence
Translation from 16 to 879
> BS17838.pep
MNIMGAGAVQLLLLIALVFLKVQGQPHLLDPQCVTARSEPGLYRVINGKP
ADLFSNPWMVIIIERGMMKCGGSLITPRYVLTAAHCKSETKSQLTVRLGD
YDVNQAVDCSSYGCIPRPREINVTRTYVPSHYTNFRKNDIALLRLETTVQ
YGDNIRSICLLMGDYTWSSNILKNLVKFNTTGWGRTESRINSPVLQQASL
THHHLSYCAQVFGKQLDKSHICVASSTGSTCQGDSGGPLTARVRIGSERR
VILFGVVSYGAVHCFGPTVYTNVIHFANWIELHTKKN*
BS17838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-PA | 284 | CG30287-PA | 1..284 | 4..287 | 1508 | 100 | Plus |
| CG33226-PC | 292 | CG33226-PC | 18..282 | 14..280 | 517 | 42.2 | Plus |
| CG30090-PA | 291 | CG30090-PA | 3..280 | 7..287 | 474 | 38.5 | Plus |
| CG30414-PC | 305 | CG30414-PC | 5..290 | 8..280 | 466 | 39.4 | Plus |
| CG30414-PB | 305 | CG30414-PB | 5..290 | 8..280 | 466 | 39.4 | Plus |
