Clone Sequence Records
BS17839.3prime Sequence
824 bp (822 high quality bases) assembled on 2007-05-30
> BS17839.3prime
ATGGTCTAGAAAGCTTCTAATACAGGTCCGATTTTTTCATGACCGCCGTG
ACCAGTGCCTTAAACGCGTCCTCGATCATGATGATGTGCAGCTGGGCATC
CCGATACGTGCAGAGCTTGTCGCTATCGGTGAGTGGCATTTCCATTGTGG
TCATGCCCAGCGATGACTGCGAATGCAGAATGCGCCCGGTGGTCATCAGG
ATGTTGACGCAGTCGTCGGCCAGAATGGGAAACGTTTCCACGAAACGAAC
CATCGCTGGCATCACATTGCGCAGGAATCTACACTTGGTCGATGCGGTCA
GCATGGACAACGTCGTCTGGATTACATTCAGGCAGAATTTCGAGACGCCC
AGACTCTTGGGTATCGAATAGTTGAGCACCAGATGGGAGGTCAGATCGAT
GGTAAAGATCTGTTTTTCCATTTCCGTCACGTTGAGGAATTCGTGAACAA
AATCAATGCATATGTGCATCGATGGCACACTGGCCACCATCATGGGAATA
ACCGACTTTGGATACGTTTGGAAGTGCACTAGTTTCGCCAGCGAAGGCTC
CGAAATGAATGCCTGATGCACATAGGTGCCAATGATGCCCTGTATCTCAC
GCAGCTCCAGATGCGACACCCGATCCGTTGCCTTGCTGGCTATGTAGTCC
AGCACCTCCAGCAGAATGTGCACGGCGGCGCTCTCCTGCGAGGCAATCAG
CGTGGTCCTTAGGTCCTCCCAAATCGCATCCGTCTGCATCATGCCATTCT
TGTCCAGCACCTGCTTCTGCTGCATCTGCATGTGCACGTTGAGATAGGTC
TTCGAGGCGGCTAGGCTGCCCTTC
BS17839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8211-PA | 3318 | CG8211-RA | 2511..3318 | 824..17 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS2-RA | 3668 | CG8211-RA | 2731..3538 | 824..17 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17652891..17653698 | 17..824 | 4040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:35:14 has no hits.
BS17839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:39:58 Download gff for
BS17839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8211-PA | 2511..3318 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:05 Download gff for
BS17839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS2-RA | 2731..3538 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:07 Download gff for
BS17839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS2-RA | 2731..3538 | 17..824 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:07 Download gff for
BS17839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17652891..17653698 | 17..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:05 Download gff for
BS17839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17546924..17547731 | 17..824 | 100 | | Plus |
BS17839.5prime Sequence
885 bp (781 high quality bases) assembled on 2007-05-30
> BS17839.5prime
GAAGTTATCACTCTACATGCCGGTGAGGATGTACGATGTATCGCCGCGCG
TTTTCTGCGCCATGCAGAATCTGGACATCACCCTGCTGGCCAGCTATCCG
GAGGCGGAGATTCGGCCCGTGCTGCCCTCGCTGGTGCGGATGAGCCTGCT
ATCGCCACTGGACAACACCGAATCGTCGATGGAGTCGCGCAAAGAGATCC
TGGCCGTGCTCATCGGCATCGAGGTGGTGAACAGCATCGTCTCCTACCTG
CAAGTCAACTACCATGAGCTGGAGAATGAGCTGAAGAAGGAGCTGCAGGC
CCGCCAGAAGTCGGCCTTCTTCGAGGGACAGCAACACGAGTACGGCCTCC
AGTCGGGCATCGCACTGGGCTTTGAGCGGGCGGATGTGGCGCGCAAGGTG
CGCGTGGTGCTCTCCGAGATCTTCAATCTGCAGCAGCAGGTCTCCGAGCA
GAAACCGGCCGCCCATTCGGAGATGCTGGACGACGGCATCTATCTGGAGG
AGGTGGTCGACATTCTGTGCATTGCTCTCGCCGAGCTGCCCTCCCTGCTG
AACATACTGGAGCTAACGGACGCCCTTGTCCATGTGCCCAACGGACATCG
CATCATCTGCGCACTGGTCGCCAACTTTCCGGATTGCTATCGCGACGTTG
TGTCCCATGTGATCGCCAATTGCGACGAGGATGGCAGCGATGGCAAGCAC
CGGTTAATGCTGCTCATGGGGCTCAGCGAGATGAATCCCTCCCAGGCGCT
GGCCAACAGGTCCATGTGCGTGGATATGCTGAAGGTGCCGTCGTTTATGC
TTAAGCTCACGCTCAAGCATCCCGAGGATCTGATAGCCTTCCTCACGGGC
CTGCTGCTGGGGCATGACCAGAATCTGCGCTCCTG
BS17839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8211-PA | 3318 | CG8211-RA | 1..869 | 17..885 | 4295 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS2-RA | 3668 | CG8211-RA | 221..1089 | 17..885 | 4315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17655783..17656598 | 832..17 | 4080 | 100 | Minus |
| X | 23542271 | X | 17655406..17655459 | 885..832 | 240 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:14:37 has no hits.
BS17839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:02 Download gff for
BS17839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8211-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:13 Download gff for
BS17839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS2-RA | 221..1089 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:42 Download gff for
BS17839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS2-RA | 221..1089 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:42 Download gff for
BS17839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17655406..17655458 | 833..885 | 96 | <- | Minus |
| X | 17655783..17656594 | 21..832 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:13 Download gff for
BS17839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17549439..17549491 | 833..885 | 96 | <- | Minus |
| arm_X | 17549816..17550627 | 21..832 | 100 | -> | Minus |
BS17839.complete Sequence
3350 bp assembled on 2010-05-12
GenBank Submission: KX804494
> BS17839.complete
GAAGTTATCAGTCGACATGCCGGTGAGGATGTACGATGTATCGCCGCGCG
TTTTCTGCGCCATGCAGAATCTGGACATCACCCTGCTGGCCAGCTATCCG
GAGGCGGAGATTCGGCCCGTGCTGCCCTCGCTGGTGCGGATGAGCCTGCT
ATCGCCACTGGACAACACCGAATCGTCGATGGAGTCGCGCAAAGAGATCC
TGGCCGTGCTCATCGGCATCGAGGTGGTGAACAGCATCGTCTCCTACCTG
CAAGTCAACTACCATGAGCTGGAGAATGAGCTGAAGAAGGAGCTGCAGGC
CCGCCAGAAGTCGGCCTTCTTCGAGGGACAGCAACACGAGTACGGCCTCC
AGTCGGGCATCGCACTGGGCTTTGAGCGGGCGGATGTGGCGCGCAAGGTG
CGCGTGGTGCTCTCCGAGATCTTCAATCTGCAGCAGCAGGTCTCCGAGCA
GAAACCGGCCGCCCATTCGGAGATGCTGGACGACGGCATCTATCTGGAGG
AGGTGGTCGACATTCTGTGCATTGCTCTCGCCGAGCTGCCCTCCCTGCTG
AACATACTGGAGCTAACGGACGCCCTTGTCCATGTGCCCAACGGACATCG
CATCATCTGCGCACTGGTCGCCAACTTTCCGGATTGCTATCGCGACGTTG
TGTCCCATGTGATCGCCAATTGCGACGAGGATGGCAGCGATGGCAAGCAC
CGGTTAATGCTGCTCATGGGGCTCAGCGAGATGAATCCCTCCCAGGCGCT
GGCCAACAGGTCCATGTGCGTGGATATGCTGAAGGTGCCGTCGTTTATGC
TTAAGCTCACGCTCAAGCATCCCGAGGATCTGATAGCCTTCCTCACGGGC
CTGCTGCTGGGCAATGACCAGAATCTGCGCTCCTGGTTCGCCGCTTACAT
CCGCTCCAGCCAGAAGCGGAAGGGGGACGCACTGAATCTGGTGCGCGTGG
AGCTGCTACAGAAGGTGATTCAAACGACGACCAATGCGGCGGAGCTGCGC
GACTTCAATCTGCAGGGCGCGGTGCTGCTGCGTCTGTACTGTGCCCTGCG
CGGCATCGGTGGCCTGAAGTTCAACGACGACGAGATCAATGCTCTGTCGC
AGCTGGTCACGAGTTGTCCGCAGGCGACGCCCTCGGGCGTGAGATTTGTA
ACGCTGGCGCTGTGCATGCTCATCGCCTGTCCCTCGCTGGTGTCCACCAT
TCCACTGGAGAACAAGGCTGTGGAGTGGCTGCAGTGGCTCATACGGGAGG
ATGCCTTTTTCTGCAAGCGCCCCGGTACTAGCACCTCGCTGGGTGAGATG
CTCCTGCTTCTGGCCATTCACTTTCACAGCAATCAGATCTCGGCCATCAG
CGAGATGGTCTGCTCCACGCTGGCCATGAAGATACCCATCCGGCCGAACA
GTACAAACAGAATCAAGCAGCTCTTCACACAGGACCTGTTCACGGAGCAG
GTGGTGGCGCTGCATGCGGTTCGCGTACCCGTCACTCCGAATTTAAATGG
CACCATACTGTGCTACCTGCCGGTGCACTGCATCCAGCAACTGCTGAAAT
CGAGGACATTTCTCAAGCACAAAGTGCCCATTAAGTCGTGGATCTTCAAG
CAAATATGCAGTTCGGTGAGGCCAGTGCATCCTGTGATGCCGGCCCTGGT
GGAGGTCTTTGTCAACACGCTGATAATACCCAATCCCACCGGAAAAGTGA
ATATTGATCACATGCACCGGCCCTTCACTGAGGCGGAAATTCTGCACGTG
TTCCGCACATCCAAGCTCACATTCTTCGCCGAGGAGCTGCCACCGATGGC
GGAAAGTCAGGAGCTCAACCAGATCGAGGTGACGTGTCCACTAACCGCCC
AGCTGCTGATGATCTACTACCTCATGTTGTACGAGGATACGCGACTGATG
AACCTCAGCGCTTTGGGTGGTCGCAAGCAGAAGGAGTACTCCAACAACTT
CCTGGGCGGACTGCCACTGAAGTATCTGCTCCAGAAGGCGCACCACTACC
ACAACGACTATCTCTCGCTCTTCCATCCGCTGCTGCGTTTGATTATCTCC
AACTATCCGCATCTCAGCATGGTCGATGACTGGCTGGAGGAGCACAATCT
GGCCCAGGGCAATTCCACGGTGGTGGTAAGCAAGCATGAGCTCAAGCCGG
AGACCCTGGATCGTGCACTGGCCGCCATCCAAACGAAACCGCATCTAGCC
ATCCGCGTGTTTAAGCAGCTACTCCAGATGCCCCCAGAAACGCAGGCGCA
GTATGGACAACAGCTGGTGAAGCATCTGCCGATGGTGTTTGCCAAGTCGG
TGCCGCGATACGTCAAGGATCTGTACAACGATATTTGGCTGCGCCTGAAT
GCCGTGCTGCCCACCACCCTGTGGATCATGTCGCTGCGAGCGATTACCAA
CGGCTCGGATACGATGGATCGACGTACCTTTGCCAACGAGAGTCTTCTGG
AGCCCATGGAGGTGCTAAGTTGTCCACGCTTCGTATTCTGTTCGCCCTAT
TTGCTGATGATCCTGCTGCGCATTCTGAAGGGCAGCCTAGCCGCCTCGAA
GACCTATCTCAACGTGCACATGCAGATGCAGCAGAAGCAGGTGCTGGACA
AGAATGGCATGATGCAGACGGATGCGATTTGGGAGGACCTAAGGACCACG
CTGATTGCCTCGCAGGAGAGCGCCGCCGTGCACATTCTGCTGGAGGTGCT
GGACTACATAGCCAGCAAGGCAACGGATCGGGTGTCGCATCTGGAGCTGC
GTGAGATACAGGGCATCATTGGCACCTATGTGCATCAGGCATTCATTTCG
GAGCCTTCGCTGGCGAAACTAGTGCACTTCCAAACGTATCCAAAGTCGGT
TATTCCCATGATGGTGGCCAGTGTGCCATCGATGCACATATGCATTGATT
TTGTTCACGAATTCCTCAACGTGACGGAAATGGAAAAACAGATCTTTACC
ATCGATCTGACCTCCCATCTGGTGCTCAACTATTCGATACCCAAGAGTCT
GGGCGTCTCGAAATTCTGCCTGAATGTAATCCAGACGACGTTGTCCATGC
TGACCGCATCGACCAAGTGTAGATTCCTGCGCAATGTGATGCCAGCGATG
GTTCGTTTCGTGGAAACGTTTCCCATTCTGGCCGACGACTGCGTCAACAT
CCTGATGACCACCGGGCGCATTCTGCATTCGCAGTCATCGCTGGGCATGA
CCACAATGGAAATGCCACTCACCGATAGCGACAAGCTCTGCACGTATCGG
GATGCCCAGCTGCACATCATCATGATCGAGGACGCGTTTAAGGCACTGGT
CACGGCGGTCATGAAAAAATCGGACCTGTATTAGAAGCTTTCTAGACCAT
BS17839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS2-RA | 3318 | CG8211-PA | 1..3318 | 17..3334 | 16590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS2-RA | 3668 | CG8211-RA | 221..3538 | 17..3334 | 16590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17653822..17655459 | 2469..832 | 8190 | 100 | Minus |
| X | 23542271 | X | 17652891..17653757 | 3334..2468 | 4335 | 100 | Minus |
| X | 23542271 | X | 17655783..17656598 | 832..17 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:39 has no hits.
BS17839.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:08 Download gff for
BS17839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8211-RA | 221..3538 | 17..3334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:39 Download gff for
BS17839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS2-RA | 221..3538 | 17..3334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:34 Download gff for
BS17839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS2-RA | 221..3538 | 17..3334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:34 Download gff for
BS17839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17652891..17653755 | 2470..3334 | 100 | <- | Minus |
| X | 17653822..17655458 | 833..2469 | 100 | <- | Minus |
| X | 17655783..17656598 | 17..832 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:39 Download gff for
BS17839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17546924..17547788 | 2470..3334 | 100 | <- | Minus |
| arm_X | 17547855..17549491 | 833..2469 | 100 | <- | Minus |
| arm_X | 17549816..17550631 | 17..832 | 100 | | Minus |
BS17839.pep Sequence
Translation from 16 to 3333
> BS17839.pep
MPVRMYDVSPRVFCAMQNLDITLLASYPEAEIRPVLPSLVRMSLLSPLDN
TESSMESRKEILAVLIGIEVVNSIVSYLQVNYHELENELKKELQARQKSA
FFEGQQHEYGLQSGIALGFERADVARKVRVVLSEIFNLQQQVSEQKPAAH
SEMLDDGIYLEEVVDILCIALAELPSLLNILELTDALVHVPNGHRIICAL
VANFPDCYRDVVSHVIANCDEDGSDGKHRLMLLMGLSEMNPSQALANRSM
CVDMLKVPSFMLKLTLKHPEDLIAFLTGLLLGNDQNLRSWFAAYIRSSQK
RKGDALNLVRVELLQKVIQTTTNAAELRDFNLQGAVLLRLYCALRGIGGL
KFNDDEINALSQLVTSCPQATPSGVRFVTLALCMLIACPSLVSTIPLENK
AVEWLQWLIREDAFFCKRPGTSTSLGEMLLLLAIHFHSNQISAISEMVCS
TLAMKIPIRPNSTNRIKQLFTQDLFTEQVVALHAVRVPVTPNLNGTILCY
LPVHCIQQLLKSRTFLKHKVPIKSWIFKQICSSVRPVHPVMPALVEVFVN
TLIIPNPTGKVNIDHMHRPFTEAEILHVFRTSKLTFFAEELPPMAESQEL
NQIEVTCPLTAQLLMIYYLMLYEDTRLMNLSALGGRKQKEYSNNFLGGLP
LKYLLQKAHHYHNDYLSLFHPLLRLIISNYPHLSMVDDWLEEHNLAQGNS
TVVVSKHELKPETLDRALAAIQTKPHLAIRVFKQLLQMPPETQAQYGQQL
VKHLPMVFAKSVPRYVKDLYNDIWLRLNAVLPTTLWIMSLRAITNGSDTM
DRRTFANESLLEPMEVLSCPRFVFCSPYLLMILLRILKGSLAASKTYLNV
HMQMQQKQVLDKNGMMQTDAIWEDLRTTLIASQESAAVHILLEVLDYIAS
KATDRVSHLELREIQGIIGTYVHQAFISEPSLAKLVHFQTYPKSVIPMMV
ASVPSMHICIDFVHEFLNVTEMEKQIFTIDLTSHLVLNYSIPKSLGVSKF
CLNVIQTTLSMLTASTKCRFLRNVMPAMVRFVETFPILADDCVNILMTTG
RILHSQSSLGMTTMEMPLTDSDKLCTYRDAQLHIIMIEDAFKALVTAVMK
KSDLY*
BS17839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS2-PA | 1105 | CG8211-PA | 1..1105 | 1..1105 | 5646 | 100 | Plus |
