Clone BS17840 Report

Search the DGRC for BS17840

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG13044-RA
Protein status:BS17840.pep: full length peptide match
Sequenced Size:500

Clone Sequence Records

BS17840.complete Sequence

500 bp assembled on 2010-02-09

GenBank Submission: KX800170

> BS17840.complete
GAAGTTATCAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGTAAAAGCTTTCTAGACCAT

BS17840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 468 CG13044-PA 1..468 17..484 2340 100 Plus
CG13043-RA 447 CG13043-PA 106..248 119..258 245 79.7 Plus
CG13063-RA 390 CG13063-PA 1..198 17..214 210 73.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..533 17..484 2340 100 Plus
CG13043-RA 646 CG13043-RA 185..327 119..258 245 79.7 Plus
CG13063-RA 544 CG13063-RA 46..245 15..214 220 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302581..16303037 484..28 2285 100 Minus
3L 28110227 3L 16305544..16305686 258..119 245 79.7 Minus
3L 28110227 3L 16306779..16306906 87..214 205 77.3 Plus
Blast to na_te.dros performed on 2014-11-28 04:37:53 has no hits.

BS17840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:21 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:38 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 53..513 22..482 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:41 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 71..531 22..482 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:21 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 41..515 9..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:21 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 71..531 22..482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:21 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16302583..16303039 22..482 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:41 Download gff for BS17840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295683..16296139 22..482 99   Minus

BS17840.3prime Sequence

498 bp (498 high quality bases) assembled on 2007-05-30

> BS17840.3prime
ATGGTCTAGAAAGCTTTTACCCTTAGCCAGCGGCGTAGGTCAGAGGGGCG
TGGTGCAGCAGGGGAGCTGGGGCGGCGTAGGAGAGGGGAGCCGAGTATGC
CACCGGTGCGGAATAGGTCAGAGGAGCGGCATACGAGGAGTAGGCCACCG
GGGCGGAGTAGGCCAGAGGAGCAGAGTAGGCGACGGGAGCCAAAGTCTTC
ACAATGGGTGCGGCGGCCAACACGGGAGCGGAGTGGACAGCGGTGGTCTT
GACCACGGGAGCCACCACATCCTCCACCACGGGGGTGCTGTGCACCTGGG
TCAGGCTCTGGTGGGACACGGCGGTGGGCACGCTCTTCACAACAGCACCC
ACTTTGGCCAGAACGGGCTCCTGGACGACGGTGGTGGTGGCGGGAGCGCT
GTAGACCAGAGGAGCAGCAGCCAGGTGACCGGGCTTGGCGGCGGCCACGG
CCAAAAGAGCAGCGAGAACGAACAATTTGAACATGTCGACTGATAACT

BS17840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 468 CG13044-RA 1..460 484..25 2275 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..525 484..25 2285 99.8 Minus
CG13043-RA 646 CG13043-RA 185..327 382..243 290 81.1 Minus
CG13063-RA 544 CG13063-RA 46..292 486..243 240 73.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302589..16303037 25..473 2230 99.8 Plus
3L 28110227 3L 16305544..16305686 243..382 245 79.7 Plus
3L 28110227 3L 16306779..16306906 414..287 205 77.3 Minus
Blast to na_te.dros performed on 2015-02-12 04:51:53 has no hits.

BS17840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:06 Download gff for BS17840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-PA 1..468 17..484 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:12 Download gff for BS17840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 17..492 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:55 Download gff for BS17840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 17..492 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:55 Download gff for BS17840.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16302581..16303041 17..480 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:12 Download gff for BS17840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295681..16296141 17..480 98   Plus

BS17840.5prime Sequence

498 bp (498 high quality bases) assembled on 2007-05-30

> BS17840.5prime
GAAGTTATCACTTGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGTAAAAGCTTTCTAGACC

BS17840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 468 CG13044-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..533 17..484 2340 100 Plus
CG13043-RA 646 CG13043-RA 185..327 119..258 290 81.1 Plus
CG13063-RA 544 CG13063-RA 46..292 15..258 240 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302581..16303037 484..28 2285 100 Minus
3L 28110227 3L 16305544..16305686 258..119 245 79.7 Minus
3L 28110227 3L 16306779..16306906 87..214 205 77.3 Plus
Blast to na_te.dros performed on 2015-02-12 16:35:45 has no hits.

BS17840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:10 Download gff for BS17840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:07 Download gff for BS17840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 9..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:29 Download gff for BS17840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 9..484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:29 Download gff for BS17840.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16302581..16303041 21..484 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:07 Download gff for BS17840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295681..16296141 21..484 99   Minus

BS17840.pep Sequence

Translation from 16 to 483

> BS17840.pep
MFKLFVLAALLAVAAAKPGHLAAAPLVYSAPATTTVVQEPVLAKVGAVVK
SVPTAVSHQSLTQVHSTPVVEDVVAPVVKTTAVHSAPVLAAAPIVKTLAP
VAYSAPLAYSAPVAYSSYAAPLTYSAPVAYSAPLSYAAPAPLLHHAPLTY
AAGSW*

BS17840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 155 CG13044-PA 1..155 1..155 767 100 Plus
CG13043-PA 148 CG13043-PA 1..148 1..155 374 60.8 Plus
CG13063-PA 129 CG13063-PA 1..127 1..146 340 56.5 Plus
CG13041-PA 124 CG13041-PA 1..121 1..131 264 50 Plus
CG13060-PA 131 CG13060-PA 1..127 1..150 261 47.3 Plus