Clone Sequence Records
BS17840.complete Sequence
500 bp assembled on 2010-02-09
GenBank Submission: KX800170
> BS17840.complete
GAAGTTATCAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGTAAAAGCTTTCTAGACCAT
BS17840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 468 | CG13044-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
CG13043-RA | 447 | CG13043-PA | 106..248 | 119..258 | 245 | 79.7 | Plus |
CG13063-RA | 390 | CG13063-PA | 1..198 | 17..214 | 210 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 624 | CG13044-RA | 66..533 | 17..484 | 2340 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 185..327 | 119..258 | 245 | 79.7 | Plus |
CG13063-RA | 544 | CG13063-RA | 46..245 | 15..214 | 220 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16302581..16303037 | 484..28 | 2285 | 100 | Minus |
3L | 28110227 | 3L | 16305544..16305686 | 258..119 | 245 | 79.7 | Minus |
3L | 28110227 | 3L | 16306779..16306906 | 87..214 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:37:53 has no hits.
BS17840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:21 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:38 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 53..513 | 22..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:41 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 71..531 | 22..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:21 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 41..515 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:21 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 71..531 | 22..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:21 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302583..16303039 | 22..482 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:41 Download gff for
BS17840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16295683..16296139 | 22..482 | 99 | | Minus |
BS17840.3prime Sequence
498 bp (498 high quality bases) assembled on 2007-05-30
> BS17840.3prime
ATGGTCTAGAAAGCTTTTACCCTTAGCCAGCGGCGTAGGTCAGAGGGGCG
TGGTGCAGCAGGGGAGCTGGGGCGGCGTAGGAGAGGGGAGCCGAGTATGC
CACCGGTGCGGAATAGGTCAGAGGAGCGGCATACGAGGAGTAGGCCACCG
GGGCGGAGTAGGCCAGAGGAGCAGAGTAGGCGACGGGAGCCAAAGTCTTC
ACAATGGGTGCGGCGGCCAACACGGGAGCGGAGTGGACAGCGGTGGTCTT
GACCACGGGAGCCACCACATCCTCCACCACGGGGGTGCTGTGCACCTGGG
TCAGGCTCTGGTGGGACACGGCGGTGGGCACGCTCTTCACAACAGCACCC
ACTTTGGCCAGAACGGGCTCCTGGACGACGGTGGTGGTGGCGGGAGCGCT
GTAGACCAGAGGAGCAGCAGCCAGGTGACCGGGCTTGGCGGCGGCCACGG
CCAAAAGAGCAGCGAGAACGAACAATTTGAACATGTCGACTGATAACT
BS17840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-PA | 468 | CG13044-RA | 1..460 | 484..25 | 2275 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 624 | CG13044-RA | 66..525 | 484..25 | 2285 | 99.8 | Minus |
CG13043-RA | 646 | CG13043-RA | 185..327 | 382..243 | 290 | 81.1 | Minus |
CG13063-RA | 544 | CG13063-RA | 46..292 | 486..243 | 240 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16302589..16303037 | 25..473 | 2230 | 99.8 | Plus |
3L | 28110227 | 3L | 16305544..16305686 | 243..382 | 245 | 79.7 | Plus |
3L | 28110227 | 3L | 16306779..16306906 | 414..287 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:51:53 has no hits.
BS17840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:06 Download gff for
BS17840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-PA | 1..468 | 17..484 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:12 Download gff for
BS17840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 17..492 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:55 Download gff for
BS17840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 17..492 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:55 Download gff for
BS17840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302581..16303041 | 17..480 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:12 Download gff for
BS17840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16295681..16296141 | 17..480 | 98 | | Plus |
BS17840.5prime Sequence
498 bp (498 high quality bases) assembled on 2007-05-30
> BS17840.5prime
GAAGTTATCACTTGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGTAAAAGCTTTCTAGACC
BS17840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-PA | 468 | CG13044-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 624 | CG13044-RA | 66..533 | 17..484 | 2340 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 185..327 | 119..258 | 290 | 81.1 | Plus |
CG13063-RA | 544 | CG13063-RA | 46..292 | 15..258 | 240 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16302581..16303037 | 484..28 | 2285 | 100 | Minus |
3L | 28110227 | 3L | 16305544..16305686 | 258..119 | 245 | 79.7 | Minus |
3L | 28110227 | 3L | 16306779..16306906 | 87..214 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:35:45 has no hits.
BS17840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:10 Download gff for
BS17840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:07 Download gff for
BS17840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:29 Download gff for
BS17840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 9..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:29 Download gff for
BS17840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302581..16303041 | 21..484 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:07 Download gff for
BS17840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16295681..16296141 | 21..484 | 99 | | Minus |
BS17840.pep Sequence
Translation from 16 to 483
> BS17840.pep
MFKLFVLAALLAVAAAKPGHLAAAPLVYSAPATTTVVQEPVLAKVGAVVK
SVPTAVSHQSLTQVHSTPVVEDVVAPVVKTTAVHSAPVLAAAPIVKTLAP
VAYSAPLAYSAPVAYSSYAAPLTYSAPVAYSAPLSYAAPAPLLHHAPLTY
AAGSW*
BS17840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-PA | 155 | CG13044-PA | 1..155 | 1..155 | 767 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 1..148 | 1..155 | 374 | 60.8 | Plus |
CG13063-PA | 129 | CG13063-PA | 1..127 | 1..146 | 340 | 56.5 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..121 | 1..131 | 264 | 50 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..127 | 1..150 | 261 | 47.3 | Plus |