Clone Sequence Records
BS17841.complete Sequence
2672 bp assembled on 2009-12-07
GenBank Submission: KX804582
> BS17841.complete
GAAGTTATCAGTCGACATGGGTTCGCTGCCACAATTGTCGATCGTCAAGG
GTCTGCAGCAAGACTTCGTGCCTAGAGCTCTGCACCGCATCTTCGAGGAG
CAGCAGCTGCGGCATGCCGACAAGGTGGCTCTGATCTATCAGCCCAGCAC
TACGGGCCAGGGAATGGCGCCCAGTCAGAGCAGCTACCGCCAGATGAACG
AGCGTGCGAACCGGGCAGCCCGCCTCCTGGTGGCCGAGACCCACGGCCGG
TTCCTGCAGCCAAACAGCGATGGTGACTTCATCGTGGCTGTGTGCATGCA
GCCGTCGGAGGGATTGGTCACCACACTGCTGGCCATCTGGAAGGCTGGCG
GCGCGTATTTGCCCATCGATCCCAGCTTCCCGGCGAACCGCATTCACCAC
ATACTGCTGGAGGCGAAGCCCACCTTGGTGATTCGCGACGATGACATCGA
CGCCGGCCGTTTCCAGGGAACTCCCACGTTATCCACCACCGAACTGTATG
CCAAATCCCTCCAGCTGGCCGGCTCCAATCTGCTCTCAGAGGAGATGCTG
CGCGGTGGCAACGACCACATCGCCATCGTGCTCTACACCTCGGGCAGTAC
GGGTGTGCCCAAGGGAGTGCGTCTGCCGCACGAGAGCATCCTCAATCGGC
TCCAGTGGCAGTGGGCGACCTTTCCGTACACCGCCAACGAGGCGGTGAGC
GTTTTCAAGACGGCCCTAACCTTCGTGGACTCGATTGCGGAGCTATGGGG
CCCGTTAATGTGTGGCCTGGCCATTCTGGTGGTGCCCAAGGCAGTGACCA
AGGATCCCCAGCGATTGGTGGCCCTGTTGGAGCGTTATAAGATCAGGCGT
CTCGTACTGGTGCCCACCCTTCTGCGCTCGTTGCTCATGTATCTGAAGAT
GGAGGGAGGCGGAGCTGCTCAGAAACTGCTGTACAATCTCCAGATTTGGG
TCTGCTCCGGAGAACCCCTATCCGTTTCCCTGGCCAGCAGCTTCTTCGAC
TATTTCGATGAGGGCGTGCACCGGCTGTACAACTTTTACGGATCCACGGA
GGTATTGGGCGATGTCACCTACTTTGCGTGCGAGAGCAAGAAGCAACTGA
GTTTGTACGATAATGTGCCCATAGGCATTCCACTGTCGAATACCGTGGTC
TATTTGTTGGATGCCGACTATCGTCCGGTGAAGAACGGCGAGATTGGGGA
GATCTTTGCTTCGGGTCTCAACTTGGCCGCTGGTTATGTTAACGGACGCG
ATCCGGAGAGGTTCTTGGAGAATCCTTTAGCTGTGGAGAAGAAATACGCC
CGTTTGTATCGCACTGGAGACTATGGATCCCTGAAGAACGGCAGCATCAT
GTACGAGGGACGCACCGACTCTCAGGTGAAGATCCGTGGACATCGCGTCG
ACCTGTCCGAAGTGGAGAAGAACGTGGCCGAGCTGCCGCTGGTGGATAAG
GCCATTGTTCTGTGCTACCATGCTGGTCAGGTGGATCAGGCTATTCTGGC
CTTCGTCAAGCTGCGCGATGATGCCCCCATGGTCACCGAGATGCAGATGG
AGGCTCGTCTCAAGGACAAGCTAGCCGATTACATGACGCCGCAGGTGGTC
ATCCTGGAGCACGTTCCATTGCTGGTCAACGGCAAGGTGGATCGCCAGGC
GCTGCTCAAAACCTATGAGACGGCCAATAACAACGAAGGTGACTCCAGTA
TCGTTCTGGACTTTGACTACTCGCAGGTTCCTGAGGATCTAAAGCTAACG
GCACGGGATCTCTTCGAGACAGTGGGCGGCGTGATTGGACGCTCCACCAG
AGCAACCCTCGCTCCGCACAGTAACTTCTATGAGCTGGGCGGCAACTCGT
TGAATTCCATTTTCACGGTGACGCTGCTGCGCGAGAAGGGCTACAACATC
GGCATTTCCGAATTCATTGCGGCCAAGAATCTGGGCGAGATCATCGAGAA
GATGGCGGCCAACCATGATGCAGTGCAGCTAGAGGAGGAATCCTTGAATG
CTTGTCCGCATCTGAAGATGGAGGCGGTGCCGCTACGCCTGGAGCACCGC
CAGGAAGTCATCGACATTATTGTGGCTAGCTTCTATAACAAGGCCGACCT
GGAGCAGTGGCTCAAGCCCGGAGTTTTGAGAACCGACTACAGCGATATAC
TGAACGATATCTGGAATGTGCTGGTGGAGCGGGACCTAAGTTTCGTGGTC
TACGATACCAACACGGATCGCATTATTGGCACAGCGTTGAACTTTGATGC
GCGCAACGAGCCCGAGGTGGACATCAAGTCCAAGCTACTCATTGTCTTCG
AGTTTCTGGAGTTTTGCGAGGGTCCCATCAGGGATAACTACCTGCCCAAG
GGTCTCAACCAAATCCTGCACTCGTTCATGATGGGCACCGCCGAGAAGTT
GAATCCCCGCGAGAACATCGCCTGCATGCACTTTATGGAGCACGAGGTTC
TGCGGGTGGCCCGCGAGAAGCAGTTCGCCGGCATCTTCACCACCAACACC
AGTCCGCTGACGCAGCAGCTGGCGGATGTCTACCACTATAAGACGCTTCT
CAACTTCCAGGTGAACGAGTACGTGCACTCCGACGGCAGCCGTCCATTCG
GCGATGCACCGGACGAGCAGCGCGCTATTGTCCATTGGAAGGAGGTGGGC
AAATAGAAGCTTTCTAGACCAT
BS17841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 2640 | CG3331-PA | 1..2640 | 17..2656 | 13200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 3142 | CG3331-RA | 300..2939 | 17..2656 | 13200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21231909..21233017 | 1125..17 | 5545 | 100 | Minus |
| 3R | 32079331 | 3R | 21230817..21231588 | 2064..1293 | 3860 | 100 | Minus |
| 3R | 32079331 | 3R | 21230042..21230369 | 2656..2329 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 21230422..21230598 | 2332..2156 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 21231676..21231845 | 1292..1123 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 21230659..21230750 | 2156..2065 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:08 has no hits.
BS17841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:20 Download gff for
BS17841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 301..2934 | 17..2650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:40 Download gff for
BS17841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 300..2933 | 17..2650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:03 Download gff for
BS17841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 301..2934 | 17..2650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:09 Download gff for
BS17841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 300..2933 | 17..2650 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:09 Download gff for
BS17841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21230817..21231588 | 1293..2064 | 100 | <- | Minus |
| 3R | 21231676..21231843 | 1125..1292 | 100 | <- | Minus |
| 3R | 21230048..21230366 | 2332..2650 | 100 | <- | Minus |
| 3R | 21230423..21230598 | 2156..2331 | 100 | <- | Minus |
| 3R | 21230660..21230750 | 2065..2155 | 100 | <- | Minus |
| 3R | 21231910..21233017 | 17..1124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:40 Download gff for
BS17841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17055770..17056088 | 2332..2650 | 100 | <- | Minus |
| arm_3R | 17056145..17056320 | 2156..2331 | 100 | <- | Minus |
| arm_3R | 17056382..17056472 | 2065..2155 | 100 | <- | Minus |
| arm_3R | 17056539..17057310 | 1293..2064 | 100 | <- | Minus |
| arm_3R | 17057398..17057565 | 1125..1292 | 100 | <- | Minus |
| arm_3R | 17057632..17058739 | 17..1124 | 100 | | Minus |
BS17841.3prime Sequence
876 bp (762 high quality bases) assembled on 2007-05-30
> BS17841.3prime
ATGGTCTAGAAAGCTTCTATTTGCCCACCTCCTTCCAATGGACAATAGCG
CGCTGCTCGTCCGGTGCATCGCCGAATGGACGGCTGCCGTCGGAGTGCAC
GTACTCGTTCACCTGGAAGTTGAGAAGCGTCTTATAGTGGTAGACATCCG
CCAGCTGCTGCGTCAGCGGACTGGTGTTGGTGGTGAAGATGCCGGCGAAC
TGCTTCTCGCGGGCCACCCGCAGAACCTCGTGCTCCATAAAGTGCATGCA
GGCGATGTTCTCGCGGGGATTCAACTTCTCGGCGGTGCCCATCATGAACG
AGTGCAGGATTTGGTTGAGACCCTTGGGCAGGTAGTTATCCCTGATGGGA
CCCTCGCAAAACTCCAGAAACTCGAAGACAATGAGTAGCTTGGACTTGAT
GTCCACCTCGGGCTCGTTGCGCGCATCAAAGTTCAACGCTGTGCCAATAA
TGCGATCCGTGTTGGTATCGTAGACCACGAAACTTAGGTCCCGCTCCACC
AGCACATTCCAGATATCGTTCAGTATATCGCTGTAGTCGGTTCTCAAAAC
TCCGGGCTTGAGCCACTGCTCCAGGTCGGCCTTGTTATAGAAGCTAGCCA
CAATAATGTCGATGACTTCCTGGCGGTGCTCCAGGCGTAGCGGCACCGCC
TCCATCTTCAGATGCGGACAAGCATTCAAGGATTCCTCCTCTAGCTGCAC
TGCATCATGGTTGGCCGCCATCTTCTCGATGATCTCGCCCAGATTCTTGG
CCGCAATGAATTCGGAAATGCCGATGTTGTAGCCCTTCTCGCGCAGCAGC
GTCACCGTGAAAATGGAATTTCACGAGTTGCCGCCCAGCTCATAGAAGTT
ACTGTGCGGAGCGAGGGGTGCTCTGG
BS17841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3331-PA | 2640 | e-RA | 1781..2640 | 876..17 | 4225 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 3142 | CG3331-RA | 2080..2939 | 876..17 | 4255 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21230042..21230369 | 17..344 | 1640 | 100 | Plus |
| 3R | 32079331 | 3R | 21230817..21231084 | 609..876 | 1295 | 98.9 | Plus |
| 3R | 32079331 | 3R | 21230422..21230598 | 341..517 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 21230659..21230750 | 517..608 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:50:22 has no hits.
BS17841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:15 Download gff for
BS17841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3331-PA | 1781..2640 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:20 Download gff for
BS17841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 2080..2939 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:24 Download gff for
BS17841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 2080..2939 | 17..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:24 Download gff for
BS17841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21230042..21230366 | 17..341 | 100 | <- | Plus |
| 3R | 21230423..21230598 | 342..517 | 100 | <- | Plus |
| 3R | 21230660..21230750 | 518..608 | 100 | <- | Plus |
| 3R | 21230817..21231084 | 609..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:20 Download gff for
BS17841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17055764..17056088 | 17..341 | 100 | <- | Plus |
| arm_3R | 17056145..17056320 | 342..517 | 100 | <- | Plus |
| arm_3R | 17056382..17056472 | 518..608 | 100 | <- | Plus |
| arm_3R | 17056539..17056806 | 609..876 | 98 | | Plus |
BS17841.5prime Sequence
831 bp (765 high quality bases) assembled on 2007-05-30
> BS17841.5prime
GAAGTTATCACTCTACATGGGTTCGCTGCCACAATTGTCGATCGTCAAGG
GTCTGCAGCAAGACTTCGTGCCTAGAGCTCTGCACCGCATCTTCGAGGAG
CAGCAGCTGCGGCATGCCGACAAGGTGGCTCTGATCTATCAGCCCAGCAC
TACGGGCCAGGGAATGGCGCCCAGTCAGAGCAGCTACCGCCAGATGAACG
AGCGTGCGAACCGGGCAGCCCGCCTCCTGGTGGCCGAGACCCACGGCCGG
TTCCTGCAGCCAAACAGCGATGGTGACTTCATCGTGGCTGTGTGCATGCA
GCCGTCGGAGGGATTGGTCACCACACTGCTGGCCATCTGGAAGGCTGGCG
GCGCGTATTTGCCCATCGATCCCAGCTTCCCGGCGAACCGCATTCACCAC
ATACTGCTGGAGGCGAAGCCCACCTTGGTGATTCGCGACGATGACATCGA
CGCCGGCCGTTTCCAGGGAACTCCCACGTTATCCACCACCGAACTGTATG
CCAAATCCCTCCAGCTGGCCGGCTCCAATCTGCTCTCAGAGGAGATGCTG
CGCGGTGGCAACGACCACATCGCCATCGTGCTCTACACCTCGGGCAGTAC
GGGTGTGCCCAAGGGAGTGCGTCTGCCGCACGAGAGCATCCTCAATCGGC
TCCAGTGGCAGTGGGCGACCTTTCCGTACACCGCCAACGAGGCGGTGAGC
GTTTTCAAGACGGCCCTAACCTTCGTGGACTCGATTGCGGAGCTATGGGG
CCCGTTAATGTGTGGCCTGGCCATTCTGGTGGTGCCCAAGGCAGTGACCA
AGGATCCCCAGCGATTGGTGGCCCTGTTGGA
BS17841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3331-PA | 2640 | e-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 3142 | CG3331-RA | 300..1114 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21232203..21233017 | 831..17 | 4075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:54:34 has no hits.
BS17841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:19 Download gff for
BS17841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3331-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:15 Download gff for
BS17841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 290..1113 | 6..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:24 Download gff for
BS17841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 290..1113 | 6..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:24 Download gff for
BS17841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21232204..21233017 | 17..830 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:15 Download gff for
BS17841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17057926..17058739 | 17..830 | 100 | <- | Minus |
BS17841.pep Sequence
Translation from 16 to 2655
> BS17841.pep
MGSLPQLSIVKGLQQDFVPRALHRIFEEQQLRHADKVALIYQPSTTGQGM
APSQSSYRQMNERANRAARLLVAETHGRFLQPNSDGDFIVAVCMQPSEGL
VTTLLAIWKAGGAYLPIDPSFPANRIHHILLEAKPTLVIRDDDIDAGRFQ
GTPTLSTTELYAKSLQLAGSNLLSEEMLRGGNDHIAIVLYTSGSTGVPKG
VRLPHESILNRLQWQWATFPYTANEAVSVFKTALTFVDSIAELWGPLMCG
LAILVVPKAVTKDPQRLVALLERYKIRRLVLVPTLLRSLLMYLKMEGGGA
AQKLLYNLQIWVCSGEPLSVSLASSFFDYFDEGVHRLYNFYGSTEVLGDV
TYFACESKKQLSLYDNVPIGIPLSNTVVYLLDADYRPVKNGEIGEIFASG
LNLAAGYVNGRDPERFLENPLAVEKKYARLYRTGDYGSLKNGSIMYEGRT
DSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYHAGQVDQAILAFVKLR
DDAPMVTEMQMEARLKDKLADYMTPQVVILEHVPLLVNGKVDRQALLKTY
ETANNNEGDSSIVLDFDYSQVPEDLKLTARDLFETVGGVIGRSTRATLAP
HSNFYELGGNSLNSIFTVTLLREKGYNIGISEFIAAKNLGEIIEKMAANH
DAVQLEEESLNACPHLKMEAVPLRLEHRQEVIDIIVASFYNKADLEQWLK
PGVLRTDYSDILNDIWNVLVERDLSFVVYDTNTDRIIGTALNFDARNEPE
VDIKSKLLIVFEFLEFCEGPIRDNYLPKGLNQILHSFMMGTAEKLNPREN
IACMHFMEHEVLRVAREKQFAGIFTTNTSPLTQQLADVYHYKTLLNFQVN
EYVHSDGSRPFGDAPDEQRAIVHWKEVGK*
BS17841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-PA | 879 | CG3331-PA | 1..879 | 1..879 | 4529 | 100 | Plus |
