Clone Sequence Records
BS17846.3prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-30
> BS17846.3prime
ATGGTCTAGAAAGCTTCTATCCCTAACCAGTAGTGCTCTCCGTGGAGCTG
CTATCAGTGGAGCTATCGGTGGAGCTATCGGTAGAGCTATCGGTGGAGCT
ATCGGTGGAGCTATCGGTGGAGCTATCAGTGGAGCTGGCAGAGGAGCTGC
TGTCGGTGGAGCTGGAGGAGCTGCTAGTTGTGCTGCTGGTGTCGGCCAAG
GAACTCTCCGTTGTCGTCCACCAAGGTCTTGGGCGACGAGGACGTGGACG
TGGGCCCCAACCGCCAGGACCGCCGAATCCACCATTGAAGCTTCCGGGAC
CGCCAAAGCGGCCGGGACCTCCGAATCCTCCACCACCGCCAAGTCCTCCA
GGCCCTCCAAAGCGACCAGGTCCGCCGAAGCCACCGGGGCCACCAGTACC
ACCAGGACCACCGCGACCGCCGAAGCCACCGCCTCCACGTCCTCCGAATC
CTCCAAGACTTCGGCCACCGCCTCCGCCGCCACCGCGTCCACCACGTCTT
CCGCCTCCCCCTTGGGCCACGACAACTGCCACCAGGGCCAGCAGGGTAAT
TGCAATGTAGGCACGCATGTCGACTGATAACT
BS17846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-PA | 552 | CG10918-RA | 1..552 | 568..17 | 2735 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 643 | CG10918-RA | 14..566 | 568..16 | 2750 | 99.8 | Minus |
CG10918-RA | 643 | CG10918-RA | 419..496 | 124..50 | 215 | 85.9 | Minus |
CG10918-RA | 643 | CG10918-RA | 458..532 | 163..86 | 215 | 85.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21428691..21429243 | 16..568 | 2750 | 99.8 | Plus |
X | 23542271 | X | 21428725..21428787 | 74..136 | 255 | 93.7 | Plus |
X | 23542271 | X | 21428749..21428811 | 50..112 | 255 | 93.7 | Plus |
X | 23542271 | X | 21428725..21428775 | 86..136 | 210 | 94.1 | Plus |
X | 23542271 | X | 21428761..21428811 | 50..100 | 210 | 94.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:46:40 has no hits.
BS17846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:46 Download gff for
BS17846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-PA | 1..552 | 17..568 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:26 Download gff for
BS17846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 5..570 | 8..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:32 Download gff for
BS17846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 5..570 | 8..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:32 Download gff for
BS17846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21428687..21429252 | 8..575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:26 Download gff for
BS17846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21299714..21300279 | 8..575 | 98 | | Plus |
BS17846.5prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-30
> BS17846.5prime
GAAGTTATCACTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGATAGAAGCTTTCTAGACC
BS17846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-PA | 552 | CG10918-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 643 | CG10918-RA | 14..566 | 17..569 | 2765 | 100 | Plus |
CG10918-RA | 643 | CG10918-RA | 419..496 | 461..535 | 215 | 85.9 | Plus |
CG10918-RA | 643 | CG10918-RA | 458..532 | 422..499 | 215 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21428691..21429243 | 569..17 | 2765 | 100 | Minus |
X | 23542271 | X | 21428725..21428787 | 511..449 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428749..21428811 | 535..473 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428725..21428775 | 499..449 | 210 | 94.1 | Minus |
X | 23542271 | X | 21428761..21428811 | 535..485 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:28:57 has no hits.
BS17846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:51 Download gff for
BS17846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:25 Download gff for
BS17846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 7..570 | 8..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:35 Download gff for
BS17846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 7..570 | 8..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:35 Download gff for
BS17846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21428687..21429250 | 8..577 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:25 Download gff for
BS17846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21299714..21300277 | 8..577 | 98 | | Minus |
BS17846.complete Sequence
584 bp assembled on 2007-06-21
GenBank Submission: KX801809
> BS17846.complete
GAAGTTATCAGTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGATAGAAGCTTTCTAGACCAT
BS17846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 552 | CG10918-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG10918-RA | 552 | CG10918-PA | 433..495 | 473..535 | 255 | 93.7 | Plus |
CG10918-RA | 552 | CG10918-PA | 457..519 | 449..511 | 255 | 93.7 | Plus |
CG10918-RA | 552 | CG10918-PA | 433..483 | 485..535 | 210 | 94.1 | Plus |
CG10918-RA | 552 | CG10918-PA | 469..519 | 449..499 | 210 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 643 | CG10918-RA | 14..566 | 17..569 | 2765 | 100 | Plus |
CG10918-RA | 643 | CG10918-RA | 446..508 | 473..535 | 255 | 93.7 | Plus |
CG10918-RA | 643 | CG10918-RA | 470..532 | 449..511 | 255 | 93.7 | Plus |
CG10918-RA | 643 | CG10918-RA | 446..496 | 485..535 | 210 | 94.1 | Plus |
CG10918-RA | 643 | CG10918-RA | 482..532 | 449..499 | 210 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21428691..21429243 | 569..17 | 2765 | 100 | Minus |
X | 23542271 | X | 21428725..21428787 | 511..449 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428749..21428811 | 535..473 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428725..21428775 | 499..449 | 210 | 94.1 | Minus |
X | 23542271 | X | 21428761..21428811 | 535..485 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:47:53 has no hits.
BS17846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:23 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:04 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:08 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 14..565 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:23 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:11 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 14..565 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:11 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21428692..21429243 | 17..568 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:08 Download gff for
BS17846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21299719..21300270 | 17..568 | 100 | | Minus |
BS17846.pep Sequence
Translation from 16 to 567
> BS17846.pep
MRAYIAITLLALVAVVVAQGGGGRRGGRGGGGGGGRSLGGFGGRGGGGFG
GRGGPGGTGGPGGFGGPGRFGGPGGLGGGGGFGGPGRFGGPGSFNGGFGG
PGGWGPRPRPRRPRPWWTTTESSLADTSSTTSSSSSSTDSSSSASSTDSS
TDSSTDSSTDSSTDSSTDSSTDSSSTESTTGSG*
BS17846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-PA | 183 | CG10918-PA | 1..183 | 1..183 | 981 | 100 | Plus |
lcs-PA | 145 | CG12794-PA | 1..145 | 1..168 | 348 | 50.9 | Plus |
CG8157-PB | 113 | CG8157-PB | 3..100 | 5..102 | 258 | 60.8 | Plus |
CG8157-PA | 113 | CG8157-PA | 3..100 | 5..102 | 258 | 60.8 | Plus |
CG7299-PC | 177 | CG7299-PC | 37..170 | 21..157 | 258 | 42.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 21..93 | 45..105 | 184 | 58.9 | Plus |
CG8157-PA | 113 | CG8157-PA | 21..93 | 45..105 | 184 | 58.9 | Plus |
CG8157-PB | 113 | CG8157-PB | 55..107 | 20..90 | 144 | 50.7 | Plus |
CG8157-PA | 113 | CG8157-PA | 55..107 | 20..90 | 144 | 50.7 | Plus |