Clone BS17846 Report

Search the DGRC for BS17846

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG10918-RA
Protein status:BS17846.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17846.3prime Sequence

582 bp (582 high quality bases) assembled on 2007-05-30

> BS17846.3prime
ATGGTCTAGAAAGCTTCTATCCCTAACCAGTAGTGCTCTCCGTGGAGCTG
CTATCAGTGGAGCTATCGGTGGAGCTATCGGTAGAGCTATCGGTGGAGCT
ATCGGTGGAGCTATCGGTGGAGCTATCAGTGGAGCTGGCAGAGGAGCTGC
TGTCGGTGGAGCTGGAGGAGCTGCTAGTTGTGCTGCTGGTGTCGGCCAAG
GAACTCTCCGTTGTCGTCCACCAAGGTCTTGGGCGACGAGGACGTGGACG
TGGGCCCCAACCGCCAGGACCGCCGAATCCACCATTGAAGCTTCCGGGAC
CGCCAAAGCGGCCGGGACCTCCGAATCCTCCACCACCGCCAAGTCCTCCA
GGCCCTCCAAAGCGACCAGGTCCGCCGAAGCCACCGGGGCCACCAGTACC
ACCAGGACCACCGCGACCGCCGAAGCCACCGCCTCCACGTCCTCCGAATC
CTCCAAGACTTCGGCCACCGCCTCCGCCGCCACCGCGTCCACCACGTCTT
CCGCCTCCCCCTTGGGCCACGACAACTGCCACCAGGGCCAGCAGGGTAAT
TGCAATGTAGGCACGCATGTCGACTGATAACT

BS17846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-PA 552 CG10918-RA 1..552 568..17 2735 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 643 CG10918-RA 14..566 568..16 2750 99.8 Minus
CG10918-RA 643 CG10918-RA 419..496 124..50 215 85.9 Minus
CG10918-RA 643 CG10918-RA 458..532 163..86 215 85.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21428691..21429243 16..568 2750 99.8 Plus
X 23542271 X 21428725..21428787 74..136 255 93.7 Plus
X 23542271 X 21428749..21428811 50..112 255 93.7 Plus
X 23542271 X 21428725..21428775 86..136 210 94.1 Plus
X 23542271 X 21428761..21428811 50..100 210 94.1 Plus
Blast to na_te.dros performed on 2015-02-13 06:46:40 has no hits.

BS17846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:46 Download gff for BS17846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-PA 1..552 17..568 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:26 Download gff for BS17846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 5..570 8..575 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:32 Download gff for BS17846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 5..570 8..575 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:32 Download gff for BS17846.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21428687..21429252 8..575 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:26 Download gff for BS17846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21299714..21300279 8..575 98   Plus

BS17846.5prime Sequence

582 bp (582 high quality bases) assembled on 2007-05-30

> BS17846.5prime
GAAGTTATCACTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGATAGAAGCTTTCTAGACC

BS17846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-PA 552 CG10918-RA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 643 CG10918-RA 14..566 17..569 2765 100 Plus
CG10918-RA 643 CG10918-RA 419..496 461..535 215 85.9 Plus
CG10918-RA 643 CG10918-RA 458..532 422..499 215 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21428691..21429243 569..17 2765 100 Minus
X 23542271 X 21428725..21428787 511..449 255 93.7 Minus
X 23542271 X 21428749..21428811 535..473 255 93.7 Minus
X 23542271 X 21428725..21428775 499..449 210 94.1 Minus
X 23542271 X 21428761..21428811 535..485 210 94.1 Minus
Blast to na_te.dros performed on 2015-02-10 16:28:57 has no hits.

BS17846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:51 Download gff for BS17846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:25 Download gff for BS17846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 7..570 8..577 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:35 Download gff for BS17846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 7..570 8..577 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:35 Download gff for BS17846.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21428687..21429250 8..577 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:25 Download gff for BS17846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21299714..21300277 8..577 98   Minus

BS17846.complete Sequence

584 bp assembled on 2007-06-21

GenBank Submission: KX801809

> BS17846.complete
GAAGTTATCAGTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGATAGAAGCTTTCTAGACCAT

BS17846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 552 CG10918-PA 1..552 17..568 2760 100 Plus
CG10918-RA 552 CG10918-PA 433..495 473..535 255 93.7 Plus
CG10918-RA 552 CG10918-PA 457..519 449..511 255 93.7 Plus
CG10918-RA 552 CG10918-PA 433..483 485..535 210 94.1 Plus
CG10918-RA 552 CG10918-PA 469..519 449..499 210 94.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 643 CG10918-RA 14..566 17..569 2765 100 Plus
CG10918-RA 643 CG10918-RA 446..508 473..535 255 93.7 Plus
CG10918-RA 643 CG10918-RA 470..532 449..511 255 93.7 Plus
CG10918-RA 643 CG10918-RA 446..496 485..535 210 94.1 Plus
CG10918-RA 643 CG10918-RA 482..532 449..499 210 94.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21428691..21429243 569..17 2765 100 Minus
X 23542271 X 21428725..21428787 511..449 255 93.7 Minus
X 23542271 X 21428749..21428811 535..473 255 93.7 Minus
X 23542271 X 21428725..21428775 499..449 210 94.1 Minus
X 23542271 X 21428761..21428811 535..485 210 94.1 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:53 has no hits.

BS17846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:23 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:04 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:08 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 14..565 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:23 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:11 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 14..565 17..568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:11 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
X 21428692..21429243 17..568 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:08 Download gff for BS17846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21299719..21300270 17..568 100   Minus

BS17846.pep Sequence

Translation from 16 to 567

> BS17846.pep
MRAYIAITLLALVAVVVAQGGGGRRGGRGGGGGGGRSLGGFGGRGGGGFG
GRGGPGGTGGPGGFGGPGRFGGPGGLGGGGGFGGPGRFGGPGSFNGGFGG
PGGWGPRPRPRRPRPWWTTTESSLADTSSTTSSSSSSTDSSSSASSTDSS
TDSSTDSSTDSSTDSSTDSSTDSSSTESTTGSG*

BS17846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-PA 183 CG10918-PA 1..183 1..183 981 100 Plus
lcs-PA 145 CG12794-PA 1..145 1..168 348 50.9 Plus
CG8157-PB 113 CG8157-PB 3..100 5..102 258 60.8 Plus
CG8157-PA 113 CG8157-PA 3..100 5..102 258 60.8 Plus
CG7299-PC 177 CG7299-PC 37..170 21..157 258 42.5 Plus
CG8157-PB 113 CG8157-PB 21..93 45..105 184 58.9 Plus
CG8157-PA 113 CG8157-PA 21..93 45..105 184 58.9 Plus
CG8157-PB 113 CG8157-PB 55..107 20..90 144 50.7 Plus
CG8157-PA 113 CG8157-PA 55..107 20..90 144 50.7 Plus