Clone Sequence Records
BS17847.3prime Sequence
878 bp (799 high quality bases) assembled on 2007-05-30
> BS17847.3prime
ATGGTCTAGAAAGCTTCTAACTGTTAGTGTGCGTGTAGTAAAGAACCGTA
TTGCCTGGTAGCTGCCAGTGGGAGGCCTTCAGCTCGATGAGTTGGAGAAG
AGTGCGCCGAATGGAGGCCGCAGATTCGCCGGCATTCAAAAAGGCATCGC
GAACCAGACTCATGAGTAACTCCAGTTGCTGGGGCAACTGCTGCTCCATG
TCCTGGCCAATACAGGTCAAAACATAAAACAAGCACTCAATCTCTGAAAG
TGATCTAATGGGTGGACGCACGCAATCCCCGCAACATTTGGAGAGCAGAC
TAAGCAGTACCAGTGGCGGAGGAGTGCCCTCGTGGTGGGTGCGTAGCTGG
AGCTGCCGACGTTTCAGCTGACAAAACATTTCCGTAAGGAAGGCCATAAA
GGCAGTGAATCGGACACGTGATGGCGACTTCATGCCCTGGATGGCAAACA
ACAGCTTCTCACGCTCCTGGTACCACTGACGGCATGTGTTGAGGAGCGCC
TCGAGAAACGTTTCCTTCTGCTCCCGGGCAATGATGTTCAGACACAGTCG
TGATATTGGCAGAGCAAAACGGCGACTCTCCACCGCGCGTTTGATGAACT
GCGATGTCAGTTCCATGAGACAGCGAGAGTTCAGTTTATTGGGATCCTCC
AGGGCCGTGTCAATAAGCGCCTGGATCTCTGGCGTGAACTGTCCTATGTC
GGCCACCTCGTTGCCCAAACCTAGTCCCAATCCGGCCATTCCACGAGTAA
GGGCATCCGCCGACGACAACGACTTGGAGCGTTGCAGTGCATTTCCATTC
ATGGTAGGATCTACTCCATTAATATTCGCCTGATAAGGCTGAGCATAGTT
GTTGTTTAGTTGACCAAACTGATTATGC
BS17847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-PA | 1533 | CG13124-RA | 672..1528 | 878..22 | 4235 | 99.7 | Minus |
CG13124-PB | 1533 | CG13124-RB | 672..1528 | 878..22 | 4235 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RJ | 3114 | CG13124-RJ | 1815..2676 | 878..17 | 4265 | 99.7 | Minus |
CG13124-RI | 2854 | CG13124-RI | 1655..2516 | 878..17 | 4265 | 99.7 | Minus |
CG13124-RH | 3084 | CG13124-RH | 1885..2746 | 878..17 | 4265 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9904282..9904705 | 455..878 | 2090 | 99.5 | Plus |
2L | 23513712 | 2L | 9903717..9903943 | 17..243 | 1120 | 99.6 | Plus |
2L | 23513712 | 2L | 9904004..9904218 | 242..456 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3699..3752 | 836..783 | 117 | 68.5 | Minus |
BS17847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:55 Download gff for
BS17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-PB | 672..1533 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:11 Download gff for
BS17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RH | 1885..2746 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:14 Download gff for
BS17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RH | 1885..2746 | 17..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:14 Download gff for
BS17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9903717..9903941 | 17..241 | 99 | <- | Plus |
2L | 9904004..9904216 | 242..454 | 100 | <- | Plus |
2L | 9904282..9904705 | 455..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:11 Download gff for
BS17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9903717..9903941 | 17..241 | 99 | <- | Plus |
arm_2L | 9904004..9904216 | 242..454 | 100 | <- | Plus |
arm_2L | 9904282..9904705 | 455..878 | 99 | | Plus |
BS17847.5prime Sequence
879 bp (780 high quality bases) assembled on 2007-05-30
> BS17847.5prime
GAAGTTATCACTCTACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGAAATGCACTGCAACGCTCCNAGTCGTTGT
CGTCGGCGGATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTG
GGCAACGAGGTGGCCGACATAGGACAGTT
BS17847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-PA | 1533 | CG13124-RA | 1..863 | 17..879 | 4296 | 99.8 | Plus |
CG13124-PB | 1533 | CG13124-RB | 1..863 | 17..879 | 4296 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RH | 3084 | CG13124-RH | 1214..2076 | 17..879 | 4304 | 99.9 | Plus |
CG13124-RG | 3137 | CG13124-RG | 1267..2129 | 17..879 | 4304 | 99.9 | Plus |
CG13124-RF | 2977 | CG13124-RF | 1107..1969 | 17..879 | 4304 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9904514..9904758 | 879..635 | 1214 | 99.6 | Minus |
2L | 23513712 | 2L | 9904827..9905053 | 634..408 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 9905138..9905291 | 408..255 | 770 | 100 | Minus |
2L | 23513712 | 2L | 9906033..9906173 | 157..17 | 705 | 100 | Minus |
2L | 23513712 | 2L | 9905875..9905974 | 254..155 | 500 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3699..3752 | 730..783 | 108 | 66.7 | Plus |
BS17847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:00 Download gff for
BS17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-PB | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:14 Download gff for
BS17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1107..1969 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:50 Download gff for
BS17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1107..1969 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:50 Download gff for
BS17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9904514..9904758 | 635..879 | 99 | <- | Minus |
2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
2L | 9906033..9906173 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:14 Download gff for
BS17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9904514..9904758 | 635..879 | 99 | <- | Minus |
arm_2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
arm_2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
arm_2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
arm_2L | 9906033..9906173 | 17..157 | 100 | | Minus |
BS17847.complete Sequence
1565 bp assembled on 2010-01-09
GenBank Submission: KX803502
> BS17847.complete
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGAAATGCACTGCAACGCTCCAAGTCGTTGT
CGTCGGCGGATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTG
GGCAACGAGGTGGCCGACATAGGACAGTTCACGCCAGAGATCCAGGCGCT
TATTGACACGGCCCTGGAGGATCCCAATAAACTGAACTCTCGCTGTCTCA
TGGAACTGACATCGCAGTTCATCAAACGCGCGGTGGAGAGTCGCCGTTTT
GCTCTGCCAATATCACGACTGTGTCTGAACATCATTGCCCGGGAGCAGAA
GGAAACGTTTCTCGAGGCGCTCCTCAACACATGCCGTCAGTGGTACCAGG
AGCGTGAGAAGCTGTTGTTTGCCATCCAGGGCATGAAGTCGCCATCACGT
GTCCGATTCACTGCCTTTATGGCCTTCCTTACGGAAATGTTTTGTCAGCT
GAAACGTCGGCAGCTCCAGCTACGCACCCACCACGAGGGCACTCCTCCGC
CACTGGTACTGCTTAGTCTGCTCTCCAAATGTTGCGGGGATTGCGTGCGT
CCACCCATTAGATCACTTTCAGAGATTGAGTGCTTGTTTTATGTTTTGAC
CTGTATTGGCCAGGACATGGAGCAGCAGTTGCCCCAGCAACTGGAGTTAC
TCATGAGTCTGGTTCGCGATGCCTTTTTGAATGCCGGCGAATCTGCGGCC
TCCATTCGGCGCACTCTTCTCCAACTCATCGAGCTGAAGGCCTCCCACTG
GCAGCTACCAGGCAATACGGTTCTTTACTACACGCACACTAACAATTAGA
AGCTTTCTAGACCAT
BS17847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RH | 1533 | CG13124-PH | 1..1533 | 17..1549 | 7665 | 100 | Plus |
CG13124-RG | 1533 | CG13124-PG | 1..1533 | 17..1549 | 7665 | 100 | Plus |
CG13124-RF | 1533 | CG13124-PF | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RH | 3084 | CG13124-RH | 1214..2746 | 17..1549 | 7665 | 100 | Plus |
CG13124-RG | 3137 | CG13124-RG | 1267..2799 | 17..1549 | 7665 | 100 | Plus |
CG13124-RF | 2977 | CG13124-RF | 1107..2639 | 17..1549 | 7665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9904282..9904758 | 1111..635 | 2385 | 100 | Minus |
2L | 23513712 | 2L | 9903717..9903943 | 1549..1323 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 9904827..9905053 | 634..408 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 9904004..9904218 | 1324..1110 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 9905138..9905291 | 408..255 | 770 | 100 | Minus |
2L | 23513712 | 2L | 9906033..9906173 | 157..17 | 705 | 100 | Minus |
2L | 23513712 | 2L | 9905875..9905974 | 254..155 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:55:06 has no hits.
BS17847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:36 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RB | 1..1533 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:05 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RB | 1200..2732 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:20 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1107..2639 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:36 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RB | 1196..2732 | 9..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:44 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1107..2639 | 17..1549 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:44 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
2L | 9906033..9906173 | 17..157 | 100 | | Minus |
2L | 9903717..9903941 | 1325..1549 | 100 | <- | Minus |
2L | 9904004..9904216 | 1112..1324 | 100 | <- | Minus |
2L | 9904282..9904758 | 635..1111 | 100 | <- | Minus |
2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:20 Download gff for
BS17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9903717..9903941 | 1325..1549 | 100 | <- | Minus |
arm_2L | 9904004..9904216 | 1112..1324 | 100 | <- | Minus |
arm_2L | 9904282..9904758 | 635..1111 | 100 | <- | Minus |
arm_2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
arm_2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
arm_2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
arm_2L | 9906033..9906173 | 17..157 | 100 | | Minus |
BS17847.pep Sequence
Translation from 16 to 1548
> BS17847.pep
MAEKVELLAQASMNGQQNDTRKVRKSPEFQPGVISRERSFVRTSNQQNIN
KRRSLAFNVPGNQTGQMRGKPAMDIYRPPNVRGELAAPAGGVGGDGPNGA
IGGVANKLNVNAQEFTMTTSSGAPAEALGNRSSLILPLTNGPGVGVAPGL
GPYGNVNRRQAGHSLGNMPGLKANHRSILVTYPINTGALSGQLPLMNSPS
SGNILHTTNRVKFAPEPRGHKVASHNQFGQLNNNYAQPYQANINGVDPYM
NGNALQRSKSLSSADALTRGMAGLGLGLGNEVADIGQFTPEIQALIDTAL
EDPNKLNSRCLMELTSQFIKRAVESRRFALPISRLCLNIIAREQKETFLE
ALLNTCRQWYQEREKLLFAIQGMKSPSRVRFTAFMAFLTEMFCQLKRRQL
QLRTHHEGTPPPLVLLSLLSKCCGDCVRPPIRSLSEIECLFYVLTCIGQD
MEQQLPQQLELLMSLVRDAFLNAGESAASIRRTLLQLIELKASHWQLPGN
TVLYYTHTNN*
BS17847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-PH | 510 | CG13124-PH | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PG | 510 | CG13124-PG | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PF | 510 | CG13124-PF | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PE | 510 | CG13124-PE | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PB | 510 | CG13124-PB | 1..510 | 1..510 | 2637 | 100 | Plus |