Clone BS17847 Report

Search the DGRC for BS17847

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG13124-RB
Protein status:BS17847.pep: full length peptide match
Sequenced Size:1565

Clone Sequence Records

BS17847.3prime Sequence

878 bp (799 high quality bases) assembled on 2007-05-30

> BS17847.3prime
ATGGTCTAGAAAGCTTCTAACTGTTAGTGTGCGTGTAGTAAAGAACCGTA
TTGCCTGGTAGCTGCCAGTGGGAGGCCTTCAGCTCGATGAGTTGGAGAAG
AGTGCGCCGAATGGAGGCCGCAGATTCGCCGGCATTCAAAAAGGCATCGC
GAACCAGACTCATGAGTAACTCCAGTTGCTGGGGCAACTGCTGCTCCATG
TCCTGGCCAATACAGGTCAAAACATAAAACAAGCACTCAATCTCTGAAAG
TGATCTAATGGGTGGACGCACGCAATCCCCGCAACATTTGGAGAGCAGAC
TAAGCAGTACCAGTGGCGGAGGAGTGCCCTCGTGGTGGGTGCGTAGCTGG
AGCTGCCGACGTTTCAGCTGACAAAACATTTCCGTAAGGAAGGCCATAAA
GGCAGTGAATCGGACACGTGATGGCGACTTCATGCCCTGGATGGCAAACA
ACAGCTTCTCACGCTCCTGGTACCACTGACGGCATGTGTTGAGGAGCGCC
TCGAGAAACGTTTCCTTCTGCTCCCGGGCAATGATGTTCAGACACAGTCG
TGATATTGGCAGAGCAAAACGGCGACTCTCCACCGCGCGTTTGATGAACT
GCGATGTCAGTTCCATGAGACAGCGAGAGTTCAGTTTATTGGGATCCTCC
AGGGCCGTGTCAATAAGCGCCTGGATCTCTGGCGTGAACTGTCCTATGTC
GGCCACCTCGTTGCCCAAACCTAGTCCCAATCCGGCCATTCCACGAGTAA
GGGCATCCGCCGACGACAACGACTTGGAGCGTTGCAGTGCATTTCCATTC
ATGGTAGGATCTACTCCATTAATATTCGCCTGATAAGGCTGAGCATAGTT
GTTGTTTAGTTGACCAAACTGATTATGC

BS17847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-PA 1533 CG13124-RA 672..1528 878..22 4235 99.7 Minus
CG13124-PB 1533 CG13124-RB 672..1528 878..22 4235 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RJ 3114 CG13124-RJ 1815..2676 878..17 4265 99.7 Minus
CG13124-RI 2854 CG13124-RI 1655..2516 878..17 4265 99.7 Minus
CG13124-RH 3084 CG13124-RH 1885..2746 878..17 4265 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9904282..9904705 455..878 2090 99.5 Plus
2L 23513712 2L 9903717..9903943 17..243 1120 99.6 Plus
2L 23513712 2L 9904004..9904218 242..456 1075 100 Plus
Blast to na_te.dros performed 2015-02-12 16:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3699..3752 836..783 117 68.5 Minus

BS17847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:55 Download gff for BS17847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-PB 672..1533 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:11 Download gff for BS17847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RH 1885..2746 17..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:14 Download gff for BS17847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RH 1885..2746 17..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:14 Download gff for BS17847.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9903717..9903941 17..241 99 <- Plus
2L 9904004..9904216 242..454 100 <- Plus
2L 9904282..9904705 455..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:11 Download gff for BS17847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9903717..9903941 17..241 99 <- Plus
arm_2L 9904004..9904216 242..454 100 <- Plus
arm_2L 9904282..9904705 455..878 99   Plus

BS17847.5prime Sequence

879 bp (780 high quality bases) assembled on 2007-05-30

> BS17847.5prime
GAAGTTATCACTCTACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGAAATGCACTGCAACGCTCCNAGTCGTTGT
CGTCGGCGGATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTG
GGCAACGAGGTGGCCGACATAGGACAGTT

BS17847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-PA 1533 CG13124-RA 1..863 17..879 4296 99.8 Plus
CG13124-PB 1533 CG13124-RB 1..863 17..879 4296 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RH 3084 CG13124-RH 1214..2076 17..879 4304 99.9 Plus
CG13124-RG 3137 CG13124-RG 1267..2129 17..879 4304 99.9 Plus
CG13124-RF 2977 CG13124-RF 1107..1969 17..879 4304 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9904514..9904758 879..635 1214 99.6 Minus
2L 23513712 2L 9904827..9905053 634..408 1135 100 Minus
2L 23513712 2L 9905138..9905291 408..255 770 100 Minus
2L 23513712 2L 9906033..9906173 157..17 705 100 Minus
2L 23513712 2L 9905875..9905974 254..155 500 100 Minus
Blast to na_te.dros performed 2015-02-13 07:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3699..3752 730..783 108 66.7 Plus

BS17847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:00 Download gff for BS17847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-PB 1..863 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:14 Download gff for BS17847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1107..1969 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:50 Download gff for BS17847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1107..1969 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:50 Download gff for BS17847.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9904514..9904758 635..879 99 <- Minus
2L 9904827..9905052 409..634 100 <- Minus
2L 9905138..9905291 255..408 100 <- Minus
2L 9905875..9905971 158..254 100 <- Minus
2L 9906033..9906173 17..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:14 Download gff for BS17847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9904514..9904758 635..879 99 <- Minus
arm_2L 9904827..9905052 409..634 100 <- Minus
arm_2L 9905138..9905291 255..408 100 <- Minus
arm_2L 9905875..9905971 158..254 100 <- Minus
arm_2L 9906033..9906173 17..157 100   Minus

BS17847.complete Sequence

1565 bp assembled on 2010-01-09

GenBank Submission: KX803502

> BS17847.complete
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGAAATGCACTGCAACGCTCCAAGTCGTTGT
CGTCGGCGGATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTG
GGCAACGAGGTGGCCGACATAGGACAGTTCACGCCAGAGATCCAGGCGCT
TATTGACACGGCCCTGGAGGATCCCAATAAACTGAACTCTCGCTGTCTCA
TGGAACTGACATCGCAGTTCATCAAACGCGCGGTGGAGAGTCGCCGTTTT
GCTCTGCCAATATCACGACTGTGTCTGAACATCATTGCCCGGGAGCAGAA
GGAAACGTTTCTCGAGGCGCTCCTCAACACATGCCGTCAGTGGTACCAGG
AGCGTGAGAAGCTGTTGTTTGCCATCCAGGGCATGAAGTCGCCATCACGT
GTCCGATTCACTGCCTTTATGGCCTTCCTTACGGAAATGTTTTGTCAGCT
GAAACGTCGGCAGCTCCAGCTACGCACCCACCACGAGGGCACTCCTCCGC
CACTGGTACTGCTTAGTCTGCTCTCCAAATGTTGCGGGGATTGCGTGCGT
CCACCCATTAGATCACTTTCAGAGATTGAGTGCTTGTTTTATGTTTTGAC
CTGTATTGGCCAGGACATGGAGCAGCAGTTGCCCCAGCAACTGGAGTTAC
TCATGAGTCTGGTTCGCGATGCCTTTTTGAATGCCGGCGAATCTGCGGCC
TCCATTCGGCGCACTCTTCTCCAACTCATCGAGCTGAAGGCCTCCCACTG
GCAGCTACCAGGCAATACGGTTCTTTACTACACGCACACTAACAATTAGA
AGCTTTCTAGACCAT

BS17847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RH 1533 CG13124-PH 1..1533 17..1549 7665 100 Plus
CG13124-RG 1533 CG13124-PG 1..1533 17..1549 7665 100 Plus
CG13124-RF 1533 CG13124-PF 1..1533 17..1549 7665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RH 3084 CG13124-RH 1214..2746 17..1549 7665 100 Plus
CG13124-RG 3137 CG13124-RG 1267..2799 17..1549 7665 100 Plus
CG13124-RF 2977 CG13124-RF 1107..2639 17..1549 7665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9904282..9904758 1111..635 2385 100 Minus
2L 23513712 2L 9903717..9903943 1549..1323 1135 100 Minus
2L 23513712 2L 9904827..9905053 634..408 1135 100 Minus
2L 23513712 2L 9904004..9904218 1324..1110 1075 100 Minus
2L 23513712 2L 9905138..9905291 408..255 770 100 Minus
2L 23513712 2L 9906033..9906173 157..17 705 100 Minus
2L 23513712 2L 9905875..9905974 254..155 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:55:06 has no hits.

BS17847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:36 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RB 1..1533 17..1549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:05 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RB 1200..2732 17..1549 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:20 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1107..2639 17..1549 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:36 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RB 1196..2732 9..1549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:44 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1107..2639 17..1549 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:44 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9905138..9905291 255..408 100 <- Minus
2L 9905875..9905971 158..254 100 <- Minus
2L 9906033..9906173 17..157 100   Minus
2L 9903717..9903941 1325..1549 100 <- Minus
2L 9904004..9904216 1112..1324 100 <- Minus
2L 9904282..9904758 635..1111 100 <- Minus
2L 9904827..9905052 409..634 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:20 Download gff for BS17847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9903717..9903941 1325..1549 100 <- Minus
arm_2L 9904004..9904216 1112..1324 100 <- Minus
arm_2L 9904282..9904758 635..1111 100 <- Minus
arm_2L 9904827..9905052 409..634 100 <- Minus
arm_2L 9905138..9905291 255..408 100 <- Minus
arm_2L 9905875..9905971 158..254 100 <- Minus
arm_2L 9906033..9906173 17..157 100   Minus

BS17847.pep Sequence

Translation from 16 to 1548

> BS17847.pep
MAEKVELLAQASMNGQQNDTRKVRKSPEFQPGVISRERSFVRTSNQQNIN
KRRSLAFNVPGNQTGQMRGKPAMDIYRPPNVRGELAAPAGGVGGDGPNGA
IGGVANKLNVNAQEFTMTTSSGAPAEALGNRSSLILPLTNGPGVGVAPGL
GPYGNVNRRQAGHSLGNMPGLKANHRSILVTYPINTGALSGQLPLMNSPS
SGNILHTTNRVKFAPEPRGHKVASHNQFGQLNNNYAQPYQANINGVDPYM
NGNALQRSKSLSSADALTRGMAGLGLGLGNEVADIGQFTPEIQALIDTAL
EDPNKLNSRCLMELTSQFIKRAVESRRFALPISRLCLNIIAREQKETFLE
ALLNTCRQWYQEREKLLFAIQGMKSPSRVRFTAFMAFLTEMFCQLKRRQL
QLRTHHEGTPPPLVLLSLLSKCCGDCVRPPIRSLSEIECLFYVLTCIGQD
MEQQLPQQLELLMSLVRDAFLNAGESAASIRRTLLQLIELKASHWQLPGN
TVLYYTHTNN*

BS17847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-PH 510 CG13124-PH 1..510 1..510 2637 100 Plus
CG13124-PG 510 CG13124-PG 1..510 1..510 2637 100 Plus
CG13124-PF 510 CG13124-PF 1..510 1..510 2637 100 Plus
CG13124-PE 510 CG13124-PE 1..510 1..510 2637 100 Plus
CG13124-PB 510 CG13124-PB 1..510 1..510 2637 100 Plus