Clone Sequence Records
BS17848.3prime Sequence
708 bp (708 high quality bases) assembled on 2007-05-30
> BS17848.3prime
ATGGTCTAGAAAGCTTTTACCGTCCTGAGCCAACTGGCAGTACCATCTCG
GCATCGGCCTCGTCATCGTCCTCCAGCCACTTGGCGATCGACAGCCGTCT
GTCGACGTCCACACTAAACAGGCGCTTCTCGAACTCCCCATATGAGATAT
GGTCGCAGCAGAAGCCAAAGGCCTGATGCTCTAAAAGTTGCAACTCGGCC
TCCACCTCAGGCAAACGGTTCTCGGAAAGCCCCTCCTGACGTTCCTGATC
CTGTTGCTGACTCCAGGCCAGATTGACAATGCTGCGCATGATCTGGCGGA
AGTCGGAGCGTGTGATGCAGCCGCTGCGCCTCGTGTCAAACATCTTGGAC
AGGAGTTGAAGCTTCTGAACACGCCCGTCGCGCCGCCTCACTGAACCGCG
TCCAAACTGTGGCACCAAAATGGTGGAGCAAGTGTCCACGAACTGCTTGA
AACCGATACGCGCGCTGGGGTCACGGCTGGGGAAGAAGCCGTCGATGATC
TGGCGGTGAAGCGGGTTGAGGGATAGCTGCGGAATGCGCAGCAAGTCGGT
GGGCGTCAAATAGCCGCGCTGGTGGCGATCCAGGCTGCGGAACCGCGTGT
GCAGCTGCTCTAGCTGCTCTGCGGACAGCCCTGTGGCCTGCTGGTGGTCA
CACAGTTGGACGGGGTTGAGCTGACGACTTCCTACCGAGCCCATGTCGAC
TGATAACT
BS17848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-PA | 678 | CG32812-RA | 1..671 | 694..24 | 3355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-RB | 980 | CG32812-RB | 80..759 | 695..16 | 3370 | 99.7 | Minus |
| CG32812-RA | 1599 | CG32812-RA | 699..1378 | 695..16 | 3370 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1288045..1288724 | 695..16 | 3370 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:36:19 has no hits.
BS17848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:04 Download gff for
BS17848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-PA | 1..678 | 17..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:14 Download gff for
BS17848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 696..1380 | 13..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:36 Download gff for
BS17848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 696..1380 | 13..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:36 Download gff for
BS17848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1288042..1288726 | 13..698 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:14 Download gff for
BS17848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1182075..1182759 | 13..698 | 99 | | Minus |
BS17848.5prime Sequence
708 bp (708 high quality bases) assembled on 2007-05-30
> BS17848.5prime
GAAGTTATCACTCTACATGGGCTCGGTAGGAAGTCGTCAGCTCAACCCCG
TCCAACTGTGTGACCACCAGCAGGCCACAGGGCTGTCCGCAGAGCAGCTA
GAGCAGCTGCACACGCGGTTCCGCAGCCTGGATCGCCACCAGCGCGGCTA
TTTGACGCCCACCGACTTGCTGCGCATTCCGCAGCTATCCCTCAACCCGC
TTCACCGCCAGATCATCGACGGCTTCTTCCCCAGCCGTGACCCCAGCGCG
CGTATCGGTTTCAAGCAGTTCGTGGACACTTGCTCCACCATTTTGGTGCC
ACAGTTTGGACGCGGTTCAGTGAGGCGGCGCGACGGGCGTGTTCAGAAGC
TTCAACTCCTGTCCAAGATGTTTGACACGAGGCGCAGCGGCTGCATCACA
CGCTCCGACTTCCGCCAGATCATGCGCAGCATTGTCAATCTGGCCTGGAG
TCAGCAACAGGATCAGGAACGTCAGGAGGGGCTTTCCGAGAACCGTTTGC
CTGAGGTGGAGGCCGAGTTGCAACTTTTAGAGCATCAGGCCTTTGGCTTC
TGCTGCGACCATATCTCATATGGGGAGTTCGAGAAGCGCCTGTTTAGTGT
GGACGTCGACAGACGGCTGTCGATCGCCAAGTGGCTGGAGGACGATGACG
AGGCCGATGCCGAGATGGTACTGCCAGTTGGCTCAGGCCCGTAAAAGCTT
TCTAGACC
BS17848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-PA | 678 | CG32812-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-RB | 980 | CG32812-RB | 80..759 | 16..695 | 3400 | 100 | Plus |
| CG32812-RA | 1599 | CG32812-RA | 699..1378 | 16..695 | 3400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1288045..1288724 | 16..695 | 3400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:35:22 has no hits.
BS17848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:09 Download gff for
BS17848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:18 Download gff for
BS17848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 694..1380 | 10..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:57 Download gff for
BS17848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 694..1380 | 10..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:57 Download gff for
BS17848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1288040..1288726 | 10..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:18 Download gff for
BS17848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1182073..1182759 | 10..698 | 99 | | Plus |
BS17848.complete Sequence
710 bp assembled on 2007-06-21
GenBank Submission: KX803382
> BS17848.complete
GAAGTTATCAGTCGACATGGGCTCGGTAGGAAGTCGTCAGCTCAACCCCG
TCCAACTGTGTGACCACCAGCAGGCCACAGGGCTGTCCGCAGAGCAGCTA
GAGCAGCTGCACACGCGGTTCCGCAGCCTGGATCGCCACCAGCGCGGCTA
TTTGACGCCCACCGACTTGCTGCGCATTCCGCAGCTATCCCTCAACCCGC
TTCACCGCCAGATCATCGACGGCTTCTTCCCCAGCCGTGACCCCAGCGCG
CGTATCGGTTTCAAGCAGTTCGTGGACACTTGCTCCACCATTTTGGTGCC
ACAGTTTGGACGCGGTTCAGTGAGGCGGCGCGACGGGCGTGTTCAGAAGC
TTCAACTCCTGTCCAAGATGTTTGACACGAGGCGCAGCGGCTGCATCACA
CGCTCCGACTTCCGCCAGATCATGCGCAGCATTGTCAATCTGGCCTGGAG
TCAGCAACAGGATCAGGAACGTCAGGAGGGGCTTTCCGAGAACCGTTTGC
CTGAGGTGGAGGCCGAGTTGCAACTTTTAGAGCATCAGGCCTTTGGCTTC
TGCTGCGACCATATCTCATATGGGGAGTTCGAGAAGCGCCTGTTTAGTGT
GGACGTCGACAGACGGCTGTCGATCGCCAAGTGGCTGGAGGACGATGACG
AGGCCGATGCCGAGATGGTACTGCCAGTTGGCTCAGGCCCGTAAAAGCTT
TCTAGACCAT
BS17848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-RB | 678 | CG32812-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
| CG32812-RA | 678 | CG32812-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-RB | 980 | CG32812-RB | 80..759 | 16..695 | 3400 | 100 | Plus |
| CG32812-RA | 1599 | CG32812-RA | 699..1378 | 16..695 | 3400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1288045..1288724 | 16..695 | 3400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:09:31 has no hits.
BS17848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:30 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:02 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:35 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 700..1375 | 17..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:30 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:10 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32812-RA | 700..1375 | 17..692 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:10 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1288046..1288721 | 17..692 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:35 Download gff for
BS17848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1182079..1182754 | 17..692 | 100 | | Plus |
BS17848.pep Sequence
Translation from 16 to 693
> BS17848.pep
MGSVGSRQLNPVQLCDHQQATGLSAEQLEQLHTRFRSLDRHQRGYLTPTD
LLRIPQLSLNPLHRQIIDGFFPSRDPSARIGFKQFVDTCSTILVPQFGRG
SVRRRDGRVQKLQLLSKMFDTRRSGCITRSDFRQIMRSIVNLAWSQQQDQ
ERQEGLSENRLPEVEAELQLLEHQAFGFCCDHISYGEFEKRLFSVDVDRR
LSIAKWLEDDDEADAEMVLPVGSGP*
BS17848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32812-PB | 225 | CG32812-PB | 1..225 | 1..225 | 1171 | 100 | Plus |
| CG32812-PA | 225 | CG32812-PA | 1..225 | 1..225 | 1171 | 100 | Plus |
| elm-PB | 189 | CG2185-PB | 1..185 | 1..203 | 228 | 31.4 | Plus |
| elm-PA | 189 | CG2185-PA | 1..185 | 1..203 | 228 | 31.4 | Plus |
