Clone Sequence Records
BS17851.complete Sequence
936 bp assembled on 2010-02-09
GenBank Submission: KX806063
> BS17851.complete
GAAGTTATCAGTCGACATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGG
GCACAGCAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCC
GCCCAGGATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGT
GCAGATCGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCAC
CTTGTCCTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACA
GTGACGACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAAC
AACCACCACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTC
GCTCATTCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGAT
GAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGA
TGAAGTGCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCT
TCCAGCTTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGC
CGTCGCAACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCT
GTCCAACAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAAC
TCAACGAGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAAC
CAGAGCCGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCA
GCAGCAGAAGCGCCGCCGCCTGTCCCGTCGCCAGCAGCAGAAGCGTCGCT
CCCAGAACCGCCGTCATCGCAACGCCCGCCGCCGTCAGCGACGCAACAAT
CGCCTGAGCCGCCTCCGTCAGCGCCGTCGCGCCAACCGTCGCCGCAACTG
AAAGCTTTCTAGACCATTCGTTTGGCGCGCCTTTTA
BS17851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 885 | CG14422-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1048 | CG14422-RA | 91..975 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943672..2944496 | 77..901 | 4125 | 100 | Plus |
X | 23542271 | X | 2943476..2943536 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2549 | 213..326 | 111 | 55.3 | Plus |
BS17851.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:41 Download gff for
BS17851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:11 Download gff for
BS17851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 91..977 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:39 Download gff for
BS17851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:21 Download gff for
BS17851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 91..977 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:21 Download gff for
BS17851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943476..2943536 | 17..77 | 100 | -> | Plus |
X | 2943673..2944498 | 78..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:11 Download gff for
BS17851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837509..2837569 | 17..77 | 100 | -> | Plus |
arm_X | 2837706..2838531 | 78..905 | 99 | | Plus |
BS17851.3prime Sequence
898 bp (830 high quality bases) assembled on 2007-05-30
> BS17851.3prime
TAAAAGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCAGCCCTGGCGACG
GTTGGCGCGACGGCGCTGACGGAGGCGGCTCAGGCGATTGTTGCGTCGCT
GACGGCGGCGGGCGTTGCGATGACGGCGGTTCTGGGAGCGACGCTTCTGC
TGCTGGCGACGGGACAGGCGGCGGCGCTTCTGCTGCTGGCGGCGAAGGGC
ACGACGGCGTTTGTTTAGGGCACGACGGCGGCTCTGGTTGGAACGGCGAC
GGGAGCTGGCAAGCTGCTTGCGCAGCTGCTCGTTGAGTTCCTTCTGCCGG
CGCAGTTCGATTTCGCGCATCAATTCGCTGTTGGACAGATTCTTGTTGCC
GGACGATCCGTAGGAGCTGCTAGCGCTGTTGCGACGGCGAATAGAAGAGG
ATGAGGATGCAGAGGCTTTGGGAGCCACAAGCTGGAAGCCGTCGTCCTCG
TTATCGTCATCATCTTGGTCGTCCTCCTGCACTTCATCCTCGTCCTTCAG
ATACTTCTCTTCCTCCACATCCTGGTCAAACTCCTCATCGTCGTCGTCCT
CGTTTCCGTCGACCAAATTGTTCTGGTTGAATGAGCGACGAGCGGTGGTG
GTAGGGTTTGTGGAAGTTGTCGTGGGTGTGGTGGTTGTTGTGGACGTTCC
AGTTGTGGTAGTGGGCCCAGTGGGTGAGGTCGTCACTGTGGTTGTGGTGG
GCACAGATGTTGTTGTGGTGGCTGCCGGAGGACAAGGTGGGTTCTTCAGG
GACATAAGCTGCTGTAAGCTGCGTGCCTCGATCTGCACTGGCTGCTTGAA
CAGGCGGTACTTGGACTGTTGGGCGGTATCCTGGGCGGACTCGTCGTTGG
AACGGGCAACAGCCGCCTGGGCAATAATTGCTGTGCCCAGCACCAGCA
BS17851.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 885 | CG14422-RA | 23..877 | 898..44 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1048 | CG14422-RA | 113..967 | 898..44 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943672..2944488 | 860..44 | 4085 | 100 | Minus |
X | 23542271 | X | 2943498..2943536 | 898..860 | 195 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 05:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2549 | 724..611 | 111 | 55.3 | Minus |
BS17851.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:22 Download gff for
BS17851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-PA | 24..885 | 36..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:36 Download gff for
BS17851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 114..975 | 36..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:02 Download gff for
BS17851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 114..975 | 36..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:02 Download gff for
BS17851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943499..2943536 | 860..897 | 100 | -> | Minus |
X | 2943673..2944496 | 36..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:36 Download gff for
BS17851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837532..2837569 | 860..897 | 100 | -> | Minus |
arm_X | 2837706..2838529 | 36..859 | 99 | | Minus |
BS17851.5prime Sequence
840 bp (777 high quality bases) assembled on 2007-05-30
> BS17851.5prime
GAAGTTATCACTTGACATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGG
GCACAGCAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCC
GCCCAGGATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGT
GCAGATCGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCAC
CTTGTCCTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACA
GTGACGACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAAC
AACCACCACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTC
GCTCATTCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGAT
GAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGA
TGAAGTGCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCT
TCCAGCTTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGC
CGTCGCAACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCT
GTCCAACAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAAC
TCAACGAGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAAC
CAGAGCCGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCA
GCAGCAGAAGCGCCGCCGCCTGTCCCGTCGCCAGCAGCAGAAGCGTCGCT
CCCAGAACCGCCGTCATCGCAACGCCCGCCGCCGTCAGCG
BS17851.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 885 | CG14422-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1048 | CG14422-RA | 91..914 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943672..2944435 | 77..840 | 3820 | 100 | Plus |
X | 23542271 | X | 2943476..2943536 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 07:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2549 | 213..326 | 111 | 55.3 | Plus |
BS17851.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:26 Download gff for
BS17851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:17 Download gff for
BS17851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 85..914 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:05 Download gff for
BS17851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 85..914 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:05 Download gff for
BS17851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943470..2943536 | 9..77 | 94 | -> | Plus |
X | 2943673..2944435 | 78..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:17 Download gff for
BS17851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837503..2837569 | 9..77 | 94 | -> | Plus |
arm_X | 2837706..2838468 | 78..840 | 100 | | Plus |
BS17851.pep Sequence
Translation from 16 to 900
> BS17851.pep
MKIFYGALLVLGTAIIAQAAVARSNDESAQDTAQQSKYRLFKQPVQIEAR
SLQQLMSLKNPPCPPAATTTTSVPTTTTVTTSPTGPTTTTGTSTTTTTPT
TTSTNPTTTARRSFNQNNLVDGNEDDDDEEFDQDVEEEKYLKDEDEVQED
DQDDDDNEDDGFQLVAPKASASSSSSIRRRNSASSSYGSSGNKNLSNSEL
MREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRR
RLSRRQQQKRRSQNRRHRNARRRQRRNNRLSRLRQRRRANRRRN*
BS17851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 294 | CG14422-PA | 1..294 | 1..294 | 1472 | 100 | Plus |
CG14420-PA | 293 | CG14420-PA | 4..293 | 8..294 | 338 | 33.7 | Plus |
CG14421-PA | 238 | CG14421-PA | 61..232 | 66..293 | 324 | 40.2 | Plus |
CG14423-PA | 305 | CG14423-PA | 36..301 | 14..291 | 174 | 25.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 483..658 | 124..293 | 165 | 23.3 | Plus |