Clone Sequence Records
BS17852.complete Sequence
1976 bp assembled on 2009-12-08
GenBank Submission: KX803394
> BS17852.complete
GAAGTTATCAGTCGACATGGTAACGATGAACTCGGAGGCGGACAAAACAC
AAGCCACCAATGCCAGCAGCACCGCGGCGCCGGCCAAAACGGACTGCACC
AGCAGCAACAGCAGCGATCCGCTGGCGGTGGCCATTCCGGAGCCACAATC
CGCCACCGCCGTCGTTGGTGGAGGTGCAGGAGGAGCAGCACCCGGCACAG
CCACGCCATCGCCAACACCACTGGCCAATGGCAGTAACAATGGCACTGGG
TCATCGGTCTCACCGGCAGCAACAGGAACAGGAGCAGTAGCCACAGCAGC
AAGTGCTCCAGCAGCAGCAGGCACAACATCGGCATCCCCGCCAGCAAGCA
ACCCAACCACTGCATCCACATCGACAGCCAGCGTTGTTGGAGCCAAGACG
GCAGCGGCCACCACCACATCCTCCTCTTCGGCCACATCCTCGTCGACGGC
GGCGGCGGGCAGCAAGCAGAGCGGCTCTAGCGGCGGACTGCTGACCGTCA
GCGGGAACCACCATCACCACCACCACGCCCACCCACAGCAGTCGGCGGCG
GGTCAATCGGCCGCCCAGCCGCCCCAGCCGCCCACCGCAACCGCCTTAGC
GGTTCCATCGGCGTCGCACCACCAACGCGGCGGAAAGAACGAGGATGCAC
CCAATATCCTAGTGTACAAAAAGATGGAGGCCATCATCGAGAAGATGCAG
GCGGAGTCGACGGGCGTGGCGGTGCGCACGGTGAAGGCGTTCATGAGCAA
GGTGCCATCGGTGTTCACGGGTGCGGATCTGGTCGCCTGGATTCTCAAGA
ACTTCGACGTGGAGGACGTGACGGAGGCCCTGCACTTTGCCCACCTGCTC
AGCTCGCATGGGTACATATTTCCCATCGATGATCATGCGCTGACCGTCAA
AAATGACGGCACCTTCTACAGATTCCAGACGCCCTACTTTTGGCCCTCGA
ATTGCTGGGAGCCCGAGAATACGGACTATGCCGTCTACCTTTGCAAGCGC
ACCATGCAGAATAAGACGCGTCTGGAGTTGGCCGACTACGAGGCCGAGAA
TCTGGCCAAGCTGCAGAAGATGTTCTCCAGAAAGTGGGAGTTTATATTCA
TGCAGGCCGAATCGCAGAGCAAAGTGGCCAAGAAGCGGGATAAGCTGGAG
CGGAAGGTGCTGGACTCGCAGGAGCGGGCCTTCTGGGATGTCCACCGGCC
AATGCCCGGCTGCGTCAACACCACCGAGATTGACATAAAGAAGGCCTACA
GACGCGGTGGTTCCAGCCATGGAACCGGATCCGCCGGCGCCTCCCTGGCC
AAGAATCCCGTCGAGCAACTGACGCGGATTATCGCGCTGCGCAAACAGAA
GCTCGAGCGTCGCACAATCAAAGTGTCAAAGGCGGCCGAGGCTTTGGTTG
CCTACTACGATCAGTACAATGAGTTCGATTACTTTATAACCTCGCCCGAG
CTGCCGAATCCTTGGCAAACAGACAGCACCGAGATGTGGGATACGGAGAA
AAATAGCAAAGAAGTTCCTGTGCGGCGCGTGAAGCGCTGGGCATTCAGTT
TGCGGGAGTTACTGAACGATGCCATTGGACGCGAGCAGTTCACCAAGTTC
TTGGAGAAGGAGTACAGCGGCGAAAATCTCAAATTCTGGGAATCGGTGCA
GGAGATGAAGGCGCTGCCGCAGTCGGAGATCAAGGAGGCGATCCAGAAGA
TATGGCAGGAGTTCCTCGCCCCCGAGGCGCCCTGTCCGGTCAACGTGGAC
TCCAAGTCGGTGGAGCTGGCCCGCGAGGCGGTCAACTCGCCAAGTGGCCC
CAATCGTTGGTGCTTCGATGTGGCCGCCTCGCATGTATATCACCTGATGA
AGAGCGACTCGTACTCCAGGTACCTGCGATCCGATATGTATAAGGATTAT
CTGAACTGCTCGCGCAAGAAGATCAAGTCCATACCGAATCTGTTCGGGGT
GAAACGTTGAAAGCTTTCTAGACCAT
BS17852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 1944 | CG9108-PB | 1..1944 | 17..1960 | 9720 | 100 | Plus |
| RSG7-RA | 1944 | CG9108-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 627..2570 | 17..1960 | 9720 | 100 | Plus |
| RSG7-RA | 2777 | CG9108-RA | 627..2570 | 17..1960 | 9720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16843151..16843807 | 673..17 | 3285 | 100 | Minus |
| X | 23542271 | X | 16841099..16841426 | 1960..1633 | 1640 | 100 | Minus |
| X | 23542271 | X | 16841937..16842226 | 1392..1103 | 1450 | 100 | Minus |
| X | 23542271 | X | 16842581..16842830 | 921..672 | 1250 | 100 | Minus |
| X | 23542271 | X | 16842332..16842520 | 1106..918 | 945 | 100 | Minus |
| X | 23542271 | X | 16841558..16841685 | 1632..1505 | 640 | 100 | Minus |
| X | 23542271 | X | 16841757..16841870 | 1506..1393 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:27:33 has no hits.
BS17852.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:14 Download gff for
BS17852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 560..2502 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:39 Download gff for
BS17852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 560..2502 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:47 Download gff for
BS17852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 560..2502 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:50 Download gff for
BS17852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 627..2569 | 17..1959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:50 Download gff for
BS17852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16841100..16841426 | 1633..1959 | 100 | <- | Minus |
| X | 16841558..16841683 | 1507..1632 | 100 | <- | Minus |
| X | 16841757..16841870 | 1393..1506 | 100 | <- | Minus |
| X | 16841937..16842223 | 1106..1392 | 100 | <- | Minus |
| X | 16842333..16842516 | 922..1105 | 100 | <- | Minus |
| X | 16842581..16842828 | 674..921 | 100 | <- | Minus |
| X | 16843151..16843807 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:39 Download gff for
BS17852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16735133..16735459 | 1633..1959 | 100 | <- | Minus |
| arm_X | 16735591..16735716 | 1507..1632 | 100 | <- | Minus |
| arm_X | 16735790..16735903 | 1393..1506 | 100 | <- | Minus |
| arm_X | 16735970..16736256 | 1106..1392 | 100 | <- | Minus |
| arm_X | 16736366..16736549 | 922..1105 | 100 | <- | Minus |
| arm_X | 16736614..16736861 | 674..921 | 100 | <- | Minus |
| arm_X | 16737184..16737840 | 17..673 | 100 | | Minus |
BS17852.3prime Sequence
896 bp (791 high quality bases) assembled on 2007-05-30
> BS17852.3prime
ATGGTCTAGAAAGCTTTCAACGTTTCACCCCGAACAGATTCGGTATGGAC
TTGATCTTCTTGCGCGAGCAGTTCAGATAATCCTTATACATATCGGATCG
CAGGTACCTGGAGTACGAGTCGCTCTTCATCAGGTGATATACATGCGAGG
CGGCCACATCGAAGCACCAACGATTGGGGCCACTTGGCGAGTTGACCGCC
TCGCGGGCCAGCTCCACCGACTTGGAGTCCACGTTGACCGGACAGGGCGC
CTCGGGGGCGAGGAACTCCTGCCATATCTTCTGGATCGCCTCCTTGATCT
CCGACTGCGGCAGCGCCTTCATCTCCTGCACCGATTCCCAGAATTTGAGA
TTTTCGCCGCTGTACTCCTTCTCCAAGAACTTGGTGAACTGCTCGCGTCC
AATGGCATCGTTCAGTAACTCCCGCAAACTGAATGCCCAGCGCTTCACGC
GCCGCACAGGAACTTCTTTGCTATTTTTCTCCGTATCCCACATCTCGGTG
CTGTCTGTTTGCCAAGGATTCGGCAGCTCGGGCGAGGTTATAAAGTAATC
GAACTCATTGTACTGATCGTAGTAGGCAACCAAAGCCTCGGCCGCCTTTG
ACACTTTGATTGTGCGACGCTCGAGCTTCTGTTTGCGCAGCGCGATAATC
CGCGTCAGTTGCTCGACGGGATTCTTGGCCAGGGAGGCGCCGGCGGATCC
GGTTCCATGGCTGGAACCACCGCGTCTGTAGGCCTTCTTTATGTCAATCT
CGGTGGTGTTGACGCAGCCGGGCATTGGCCGGTGGACATCCCAGAAGGCC
CGCTCCTGCGAGTCCAGCACCTTCCGCTCCAGCTTATCCCGCTTCTTGGC
CACTTTGCTCTGCGATTCGGCCTGCATGAATATAAACTCCCACTTT
BS17852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9108-PA | 1944 | RSG7-RA | 1065..1944 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 1691..2570 | 896..17 | 4400 | 100 | Minus |
| RSG7-RA | 2777 | CG9108-RA | 1691..2570 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16841099..16841426 | 17..344 | 1640 | 100 | Plus |
| X | 23542271 | X | 16841937..16842226 | 585..874 | 1450 | 100 | Plus |
| X | 23542271 | X | 16841558..16841685 | 345..472 | 640 | 100 | Plus |
| X | 23542271 | X | 16841757..16841870 | 471..584 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:27:46 has no hits.
BS17852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:31 Download gff for
BS17852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9108-PA | 1065..1944 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:15 Download gff for
BS17852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 1624..2503 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:48 Download gff for
BS17852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 1691..2570 | 17..896 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:48 Download gff for
BS17852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16841558..16841683 | 345..470 | 100 | <- | Plus |
| X | 16841757..16841870 | 471..584 | 100 | <- | Plus |
| X | 16841937..16842223 | 585..871 | 100 | <- | Plus |
| X | 16841099..16841426 | 17..344 | 100 | <- | Plus |
| X | 16842333..16842357 | 872..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:15 Download gff for
BS17852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16735132..16735459 | 17..344 | 100 | <- | Plus |
| arm_X | 16735591..16735716 | 345..470 | 100 | <- | Plus |
| arm_X | 16735790..16735903 | 471..584 | 100 | <- | Plus |
| arm_X | 16735970..16736256 | 585..871 | 100 | <- | Plus |
| arm_X | 16736366..16736390 | 872..896 | 100 | | Plus |
BS17852.5prime Sequence
925 bp (812 high quality bases) assembled on 2007-05-30
> BS17852.5prime
GAAGTTATCACTCGACATGGTAACGATGAACTCGGAGGCGGACAAAACAC
AAGCCACCAATGCCAGCAGCACCGCGGCGCCGGCCAAAACGGACTGCACC
AGCAGCAACAGCAGCGATCCGCTGGCGGTGGCCATTCCGGAGCCACAATC
CGCCACCGCCGTCGTTGGTGGAGGTGCAGGAGGAGCAGCACCCGGCACAG
CCACGCCATCGCCAACACCACTGGCCAATGGCAGTAACAATGGCACTGGG
TCATCGGTCTCACCGGCAGCAACAGGAACAGGAGCAGTAGCCACAGCAGC
AAGTGCTCCAGCAGCAGCAGGCACAACATCGGCATCCCCGCCAGCAAGCA
ACCCAACCACTGCATCCACATCGACAGCCAGCGTTGTTGGAGCCAAGACG
GCAGCGGCCACCACCACATCCTCCTCTTCGGCCACATCCTCGTCGACGGC
GGCGGCGGGCAGCAAGCAGAGCGGCTCTAGCGGCGGACTGCTGACCGTCA
GCGGGAACCACCATCACCACCACCACGCCCACCCACAGCAGTCGGCGGCG
GGTCAATCGGCCGCCCAGCCGCCCCAGCCGCCCACCGCAACCGCCTTAGC
GGTTCCATCGGCGTCGCACCACCAACGCGGCGGAAAGAACGAGGATGCAC
CCAATATCCTAGTGTACAAAAAGATGGAGGCCATCATCGAGAAGATGCAG
GCGGAGTCGACGGGCGTGGCGGTGCGCACGGTGAAGGCGTTCATGAGCAA
GGTGCCATCGGTGTTCACGGGTGCGGATCTGGTCGCCTGGATTCTCAAGA
ACTTCGACGTGGAGGACGTGACGGAGGCCCTGCACTTTGCCCACCTGCTC
AGCTCGCATGGGTACATATTTCCCATCGATGATCATGCGCTGACCGTCAA
AAATGACGGCACCTTCTACAGATTC
BS17852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9108-PA | 1944 | RSG7-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 627..1535 | 17..925 | 4545 | 100 | Plus |
| RSG7-RA | 2777 | CG9108-RA | 627..1535 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16843151..16843807 | 673..17 | 3285 | 100 | Minus |
| X | 23542271 | X | 16842581..16842830 | 921..672 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:50:45 has no hits.
BS17852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:35 Download gff for
BS17852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9108-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:25 Download gff for
BS17852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 560..1468 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:13:28 Download gff for
BS17852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 627..1535 | 17..925 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:13:28 Download gff for
BS17852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16842577..16842828 | 674..925 | 98 | <- | Minus |
| X | 16843151..16843807 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:25 Download gff for
BS17852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16736610..16736861 | 674..925 | 98 | <- | Minus |
| arm_X | 16737184..16737840 | 17..673 | 100 | | Minus |
BS17852.pep Sequence
Translation from 16 to 1959
> BS17852.pep
MVTMNSEADKTQATNASSTAAPAKTDCTSSNSSDPLAVAIPEPQSATAVV
GGGAGGAAPGTATPSPTPLANGSNNGTGSSVSPAATGTGAVATAASAPAA
AGTTSASPPASNPTTASTSTASVVGAKTAAATTTSSSSATSSSTAAAGSK
QSGSSGGLLTVSGNHHHHHHAHPQQSAAGQSAAQPPQPPTATALAVPSAS
HHQRGGKNEDAPNILVYKKMEAIIEKMQAESTGVAVRTVKAFMSKVPSVF
TGADLVAWILKNFDVEDVTEALHFAHLLSSHGYIFPIDDHALTVKNDGTF
YRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKTRLELADYEAENLAKLQ
KMFSRKWEFIFMQAESQSKVAKKRDKLERKVLDSQERAFWDVHRPMPGCV
NTTEIDIKKAYRRGGSSHGTGSAGASLAKNPVEQLTRIIALRKQKLERRT
IKVSKAAEALVAYYDQYNEFDYFITSPELPNPWQTDSTEMWDTEKNSKEV
PVRRVKRWAFSLRELLNDAIGREQFTKFLEKEYSGENLKFWESVQEMKAL
PQSEIKEAIQKIWQEFLAPEAPCPVNVDSKSVELAREAVNSPSGPNRWCF
DVAASHVYHLMKSDSYSRYLRSDMYKDYLNCSRKKIKSIPNLFGVKR*
BS17852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-PB | 647 | CG9108-PB | 1..647 | 1..647 | 3357 | 100 | Plus |
| RSG7-PA | 647 | CG9108-PA | 1..647 | 1..647 | 3357 | 100 | Plus |
| CG42450-PA | 1244 | CG42450-PA | 20..618 | 44..630 | 989 | 36.6 | Plus |
| CG42450-PB | 1280 | CG42450-PB | 20..618 | 44..630 | 989 | 36.6 | Plus |
| loco-PF | 782 | CG5248-PF | 65..189 | 508..634 | 207 | 37.2 | Plus |
