Clone Sequence Records
BS17855.3prime Sequence
898 bp (825 high quality bases) assembled on 2007-05-30
> BS17855.3prime
ATGGTCTAGAAAGCTTTCATTCTTCAACCAGTGCAGAAGTCGTCCGCTTC
GATTTCTGCACCTGCGTCTGAACGCCGTGCTGCACGCACAGTCGCTCGAA
GTTGGCGCGCAGTTTTGCGCGGAGCTCCTCTCGCTTTCGCTGCACTTGCT
CCCGGTGGCACTTGAAGGCCATAACCACCTCCTGGGGAATGTAATATGTC
TCCTCGTCTTTGTCGTCGTATTCGTCGAAGTCGTCCCACATCTGCAACAA
TGAAAACTTGTGATCCAACTGCGACTGGTGACTGTAGAAGAGCAAGTCGT
CTGAGTCCTCATCGTGGACGTCGTGATTACACAGTCCATCCGAGCAAGAC
ACTTCCGAGCCTTCTGGTGACGAAATCGCGCTAGATGTCCGAGAGCCGGC
ATGCGAAGGTGGATCGCTGCCGTATCCAGAATCGCGCACATCCTGCTCGC
ACGGGCAGTTAGGCATGGACGCCAGGCACTCCTCGCACTTATCGCCAACC
GTTTTGGCGATGCTTGACGAAATGCAACTGGCCACGTCAAGTTGATCGTG
ATCAGCATCCAGCGGCTGGACCCTAGCCGTGGCTTGCATCTGCTTTTGGT
TGCCCATCTTTGTGAAGGCCGCTTTCTTCTGCTTCTTTTTCTTCGATTGC
TTCTTCGGTTTCGATTTCGTTGGCTTGGACGTTAGCTCGGGTTCGGGCTC
CGGGCTCCGGGCTGCCTCTATAACAATGCCATCGTCCGCACCTGGATCGC
TTAGCTCCTCATGCTGCATCTGACTCTCCTCCTCCAGGTCTAGTTCCTCA
TTCCGCAACTCTTCCTCCTCCTCGTCAGACTCGTTGGCCTCGGTATCGTC
GCATTGCCGGTGCAGCAAGTTCTTTTTCTCGTCCTTCTTCCTCTTCTT
BS17855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-PA | 2016 | CG2182-RA | 1135..2008 | 898..25 | 4345 | 99.8 | Minus |
| CG2182-PB | 1920 | CG2182-RB | 1039..1912 | 898..25 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 1417..2300 | 898..15 | 4360 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5656798..5657461 | 235..898 | 3305 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5656351..5656572 | 15..236 | 1065 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:17:00 has no hits.
BS17855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:00 Download gff for
BS17855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-PB | 1039..1920 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:48:40 Download gff for
BS17855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 1417..2306 | 10..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:17 Download gff for
BS17855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 1417..2306 | 10..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:17 Download gff for
BS17855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5656345..5656571 | 10..235 | 97 | <- | Plus |
| 3R | 5656799..5657461 | 236..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:48:40 Download gff for
BS17855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1482067..1482293 | 10..235 | 97 | <- | Plus |
| arm_3R | 1482521..1483183 | 236..898 | 99 | | Plus |
BS17855.5prime Sequence
847 bp (819 high quality bases) assembled on 2007-05-30
> BS17855.5prime
GAAGTTATCACTCTACATGGCCAGACTCACAAAGGTCTACAACACGGACG
ACGACGACTCCGGTTACGTTGGTCGCAGAAATTTGCCCCTGGTGGCTGGC
GATAAATTAATGATGCTCATGGACCTGAACAGCAAAGGTCTAGTGATCGA
CAGTCCGCTGATCCGCGGACGTGAACTGGAGGAGTTTTCACGGAAATTCA
AACTGCTCACAGAGGCCGAGCGCCGGCAATCGCTGGAGATCGACAGTGCC
AGTTTTATGGAAGTCCTCAATCAATGTGTCCAGTGCGTTGGCTGCCGCAG
ACGCGTAGAGCGGTTGTTTCACCAACTAACCGAGACGGGGCACCGAACAC
TTGATCCGCTGGAACTGCGACCCACTGCCACCCTGGGCATTGTGGAGGAG
AAGCTTAAGACTCCGCAGGCACTGGGAACGCTGCTCTACCGGCACCATGA
GGTTCTCAACAACCTGCTGGACAACAAACTGCGAAACAAGACGCGCTGCG
TTCTTCATTCGCTGGACGCCTTTCGTGCCAAACCCTTTTCGGAGACATGG
CGAGAGGTGTGGTCCGCCATGAAGAGTAACTGCCGCAACGAGTTAACCAT
CATCGAGACAAAGGAATTGCACGACGTACTGGAGAACTACCTGAAGAAGC
ACAAGTTTTGCTCTGGCTGCCGTACAAAGATTGAGCGCGCCTACAAAATA
CTCATTGGTGAAATATCGTCCAAGGAGAAGGGCTATGCGGCCCAGTTGTA
CGCTCATATTCGGAAGTGCGTGCCCGACCAGCACATCCACGTGACCACAA
ACAAGATAGAGTTCCTGGACGCGCTGATCAAGCGGGCCGAGCCCGAG
BS17855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-PA | 2016 | CG2182-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG2182-PB | 1920 | CG2182-RB | 1..735 | 113..847 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 283..1113 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5658141..5658708 | 679..112 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 5657765..5657934 | 847..678 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 5659535..5659630 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:50:59 has no hits.
BS17855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:04 Download gff for
BS17855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:28 Download gff for
BS17855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 273..1113 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:13:52 Download gff for
BS17855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 273..1113 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:13:52 Download gff for
BS17855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5657765..5657932 | 680..847 | 100 | <- | Minus |
| 3R | 5658141..5658707 | 113..679 | 100 | <- | Minus |
| 3R | 5659535..5659640 | 7..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:28 Download gff for
BS17855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1483487..1483654 | 680..847 | 100 | <- | Minus |
| arm_3R | 1483863..1484429 | 113..679 | 100 | <- | Minus |
| arm_3R | 1485257..1485362 | 7..112 | 96 | | Minus |
BS17855.complete Sequence
2048 bp assembled on 2009-12-07
GenBank Submission: KX805458
> BS17855.complete
GAAGTTATCAGTCGACATGGCCAGACTCACAAAGGTCTACAACACGGACG
ACGACGACTCCGGTTACGTTGGTCGCAGAAATTTGCCCCTGGTGGCTGGC
GATAAATTAATGATGCTCATGGACCTGAACAGCAAAGGTCTAGTGATCGA
CAGTCCGCTGATCCGCGGACGTGAACTGGAGGAGTTTTCACGGAAATTCA
AACTGCTCACAGAGGCCGAGCGCCGGCAATCGCTGGAGATCGACAGTGCC
AGTTTTATGGAAGTCCTCAATCAATGTGTCCAGTGCGTTGGCTGCCGCAG
ACGCGTAGAGCGGTTGTTTCACCAACTAACCGAGACGGGGCACCGAACAC
TTGATCCGCTGGAACTGCGACCCACTGCCACCCTGGGCATTGTGGAGGAG
AAGCTTAAGACTCCGCAGGCACTGGGAACGCTGCTCTACCGGCACCATGA
GGTTCTCAACAACCTGCTGGACAACAAACTGCGAAACAAGACGCGCTGCG
TTCTTCATTCGCTGGACGCCTTTCGTGCCAAACCCTTTTCGGAGACATGG
CGAGAGGTGTGGTCCGCCATGAAGAGTAACTGCCGCAACGAGTTAACCAT
CATCGAGACAAAGGAATTGCACGACGTACTGGAGAACTACCTGAAGAAGC
ACAAGTTTTGCTCTGGCTGCCGTACAAAGATTGAGCGCGCCTACAAAATA
CTCATTGGTGAAATATCGTCCAAGGAGAAGGGCTATGCGGCCCAGTTGTA
CGCTCATATTCGGAAGTGCGTGCCCGACCAGCACATCCACGTGACCACAA
ACAAGATAGAGTTCCTGGACGCGCTGATCAAGCGGGCCGAGCCCGAGGTG
AACGGTAGCTACTCTAAACTGCGCGAGCGCCACGCTAAGACGCTGGAGAT
TGCCCAGGAAGAGGTGCTGACCTGCGTGGGCATGATTATGTACGAACGGC
TGCGTCGCATCTACGTCAGTCTGCGGGAGGAGGAGCGCGCATGCCAGGTG
CTGGCCGCTGTGGGTGTCCACGCCCTTTGCCGCAGCTTTGACACGTTCGT
GGAGCAGAAGCAGGGAATCAGCAATCTGGAGCTACTCTACCAAGAGATCA
GCCGTGCTGAGAGGGCCAAGCAGATCAAGCGCGAGCAGAAGAAGCTCAAG
AAGAAGAAGAAGAAGGACGAGAAAAAGAACTTGCTGCACCGGCAATGCGA
CGATACCGAGGCCAACGAGTCTGACGAGGAGGAGGAAGAGTTGCGGAATG
AGGAACTAGACCTGGAGGAGGAGAGTCAGATGCAGCATGAGGAGCTAAGC
GATCCAGGTGCGGACGATGGCATTGTTATAGAGGCAGCCCGGAGCCCGGA
GCCCGAACCCGAGCTAACGTCCAAGCCAACGAAATCGAAACCGAAGAAGC
AATCGAAGAAAAAGAAGCAGAAGAAAGCGGCCTTCACAAAGATGGGCAAC
CAAAAGCAGATGCAAGCCACGGCTAGGGTCCAGCCGCTGGATGCTGATCA
CGATCAACTTGACGTGGCCAGTTGCATTTCGTCAAGCATCGCCAAAACGG
TTGGCGATAAGTGCGAGGAGTGCCTGGCGTCCATGCCTAACTGCCCGTGC
GAGCAGGATGTGCGCGATTCTGGATACGGCAGCGATCCACCTTCGCATGC
CGGCTCTCGGACATCTAGCGCGATTTCGTCACCAGAAGGCTCGGAAGTGT
CTTGCTCGGATGGACTGTGTAATCACGACGTCCACGATGAGGACTCAGAC
GACTTGCTCTTCTACAGTCACCAGTCGCAGTTGGATCACAAGTTTTCATT
GTTGCAGATGTGGGACGACTTCGACGAATACGACGACAAAGACGAGGAGA
CATATTACATTCCCCAGGAGGTGGTTATGGCCTTCAAGTGCCACCGGGAG
CAAGTGCAGCGAAAGCGAGAGGAGCTCCGCGCAAAACTGCGCGCCAACTT
CGAGCGACTGTGCGTGCAGCACGGCGTTCAGACGCAGGTGCAGAAATCGA
AGCGGACGACTTCTGCACTGGTTGGCCAATGAAAGCTTTCTAGACCAT
BS17855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2016 | CG2182-PA | 1..2016 | 17..2032 | 10080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 283..2300 | 17..2034 | 10090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5656798..5657934 | 1814..678 | 5685 | 100 | Minus |
| 3R | 32079331 | 3R | 5658141..5658708 | 679..112 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 5656351..5656572 | 2034..1813 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 5659535..5659630 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:02 has no hits.
BS17855.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:19 Download gff for
BS17855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 280..2294 | 17..2031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:38 Download gff for
BS17855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 283..2297 | 17..2031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:14 Download gff for
BS17855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 280..2294 | 17..2031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:07 Download gff for
BS17855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 283..2297 | 17..2031 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:07 Download gff for
BS17855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5656354..5656571 | 1814..2031 | 100 | <- | Minus |
| 3R | 5656799..5657932 | 680..1813 | 100 | <- | Minus |
| 3R | 5658141..5658707 | 113..679 | 100 | <- | Minus |
| 3R | 5659535..5659630 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:38 Download gff for
BS17855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1482076..1482293 | 1814..2031 | 100 | <- | Minus |
| arm_3R | 1482521..1483654 | 680..1813 | 100 | <- | Minus |
| arm_3R | 1483863..1484429 | 113..679 | 100 | <- | Minus |
| arm_3R | 1485257..1485352 | 17..112 | 100 | | Minus |
BS17855.pep Sequence
Translation from 16 to 2031
> BS17855.pep
MARLTKVYNTDDDDSGYVGRRNLPLVAGDKLMMLMDLNSKGLVIDSPLIR
GRELEEFSRKFKLLTEAERRQSLEIDSASFMEVLNQCVQCVGCRRRVERL
FHQLTETGHRTLDPLELRPTATLGIVEEKLKTPQALGTLLYRHHEVLNNL
LDNKLRNKTRCVLHSLDAFRAKPFSETWREVWSAMKSNCRNELTIIETKE
LHDVLENYLKKHKFCSGCRTKIERAYKILIGEISSKEKGYAAQLYAHIRK
CVPDQHIHVTTNKIEFLDALIKRAEPEVNGSYSKLRERHAKTLEIAQEEV
LTCVGMIMYERLRRIYVSLREEERACQVLAAVGVHALCRSFDTFVEQKQG
ISNLELLYQEISRAERAKQIKREQKKLKKKKKKDEKKNLLHRQCDDTEAN
ESDEEEEELRNEELDLEEESQMQHEELSDPGADDGIVIEAARSPEPEPEL
TSKPTKSKPKKQSKKKKQKKAAFTKMGNQKQMQATARVQPLDADHDQLDV
ASCISSSIAKTVGDKCEECLASMPNCPCEQDVRDSGYGSDPPSHAGSRTS
SAISSPEGSEVSCSDGLCNHDVHDEDSDDLLFYSHQSQLDHKFSLLQMWD
DFDEYDDKDEETYYIPQEVVMAFKCHREQVQRKREELRAKLRANFERLCV
QHGVQTQVQKSKRTTSALVGQ*
BS17855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-PA | 671 | CG2182-PA | 1..671 | 1..671 | 3484 | 100 | Plus |
