Clone Sequence Records
BS17862.complete Sequence
2453 bp assembled on 2009-12-07
GenBank Submission: KX803799
> BS17862.complete
GAAGTTATCAGTCGACATGGGTAAACAAAAAATCTACTGTGCGAAATGCA
CGAAGAAGTGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCAC
AAGGCCTGCTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGG
ATTCTTCACAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGC
TGTACGGCACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTG
GTCAGCACCATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAA
GTGCAAGCAGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGG
AGGTGCTTTGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGC
CAGGCGACGGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCC
GACGAGAGCCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGG
CGCACCTCAAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAG
CTGCTGAAGGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGT
CTCTTGTTTCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACA
TGGGCAAAGACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTC
GGGGTGAAGTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCA
GGCGGGCGACAACCACCACTTCCATCCGACCTGTGCCCGCTGCACAAAGT
GCGGCGATCCCTTCGGCGACGGCGAGGAGATGTACCTGCAGGGCAGTGCC
ATCTGGCATCCGCGATGCGGTCCGGGTCCCTCCGAGTCCGGCATAATTTT
GAACGGCGGCGGAGGCACTTCGTCGGTGGTCGGAGGTGCCTCCAATGGCA
ACTTCACAGACACTGAATGCGACCGGATGAGCTCCAGTGCCCTTAGCGAG
ATGTACATCCGCTCCAGAACTCCGAGCTTTAATGGTTCACTTTATTCCTC
TAGCCGCAAGCACTACCGAACGGTGAGTCCGGGTCTGATACTCCGGGAGT
ACGGACGACCCAATGCCGAGGACATCTCGCGCATCTACACCTACAGCTAT
CTGACGGATGCGCCGCACTATCTGCGCAAGCCGATCGATCCGTATGACAA
GACGCCGCTGTCGCCGCACTTCCATCGGCCCTCCTCATACGCGACCACCG
CCAGCAATGCGGGATCCGTGGCCGGAAGCCGCCCGCCGTCGCGTCCCCAC
TCGCGGACCCGCAGCGCCATGAAGGTGCTGGTGGACGCCATCCGCTCGGA
GACGCCGCGTCCCAAGAGTCCTGGCATGAACAACGAGGAGCCGATTGAAC
TGTCTCACTATCCGGCCGCCAAGAAGCCGCCGCCAGGTGAGCAGCCCAAG
ATCGAGCGGGATGACTTTCCCGCTCCGCCGTATCCCTACACGGATCCGGA
GCGTAGGCGGCGATACAGTGATACCTACAAGGGAGTGCCCGCCTCCGATG
ATGAGGACGAGAATGTGGAGAATGGCAAGCCGAATGGCAAGGTCAAGAAT
GGCGAGGAGCAGCAACGCCTTCAACGCGAAGCCGAACAGCTGGAAAAGCT
TAACTCGGGCATCGGATCGGCGATTGCCAAGGACCTCAAGGAGCACGCCA
AGTACAGGAAGTGGAAGCAGAACAATTTGGATCCGCGCAACGCATCCAGG
ACGCCCTCCGCTTCCAAGGAGCCACTCTACAAATTGAGATACGAATCGCC
CATTGGAGCATCGCCATCGCGCAATCTGGACCACCAGAAGCCCTTCTACG
AGGACGAGATGTTCGATCGCTCCACCAGCTACCGTGGCTCGCTTGGCAAA
TCGCTTGGAAACGCGCCCAGCTACAATGCCATACATTCCTACCGATCGCC
GCCCAAGCCCGGATACGGATTCAAAACGACGACTCTGCCCTATATACGCA
ATGGCTTCAGCTCCGACTTCTCCTATGGAGGACTGGGCGACAAGACCCAC
AGCACAGATTTGAGCTGCGGCAAATCGGAGGCTTCTGTGGACTCGATCAC
CGAGGGCGATAGGCGAGCTCTGATGGGCGGCGACCTGCCCGCCTCGAGCA
CTTACTCAGGAGCACTCTCCTACCACTATCCGCAGGCCGGACTCATCCGG
CGCAGTCTGCCCAACATGTCCCATTCGATGCTGGTGCACGAGCCGGCCAA
GATCTATCCCTATCACCTACTGCTAATCACAAACTACCGTCTGCCCTCGG
ACGTGGATCGCTGTAACCTAGAGCGCCATCTGTCGGACATCGAATTCGAA
CACATCTTGCAGTGCGCCAGGTCGGAGTTCTATCGGCTACCCCAGTGGCG
ACGCAACGAGCTGAAGCGGCGTGTGAAGCTCTTCTAGAAGCTTTCTAGAC
CAT
BS17862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115a-RA | 2421 | CG31352-PA | 1..2421 | 17..2437 | 12105 | 100 | Plus |
| Unc-115a-RG | 2487 | CG31352-PG | 70..2487 | 20..2437 | 12090 | 100 | Plus |
| Unc-115a-RC | 2520 | CG31352-PC | 103..2520 | 20..2437 | 12090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115a-RA | 3278 | CG31352-RA | 465..2890 | 12..2437 | 12115 | 100 | Plus |
| Unc-115a-RG | 3700 | CG31352-RG | 559..2976 | 20..2437 | 12090 | 100 | Plus |
| Unc-115a-RC | 3200 | CG31352-RC | 395..2812 | 20..2437 | 12090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9690432..9691105 | 1003..330 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 9698318..9698991 | 1003..330 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 9689322..9689877 | 1614..1059 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 9697208..9697763 | 1614..1059 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 9691161..9691476 | 335..20 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9699047..9699362 | 335..20 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9695282..9695524 | 2323..2081 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 9689080..9689253 | 1788..1615 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 9696966..9697139 | 1788..1615 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 9687490..9687638 | 2229..2081 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 9688714..9688855 | 1928..1787 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 9696600..9696741 | 1928..1787 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 9695110..9695225 | 2437..2322 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 9688535..9688622 | 2015..1928 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 9696421..9696508 | 2015..1928 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 9687701..9687767 | 2081..2015 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 9695587..9695653 | 2081..2015 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 9690022..9690079 | 1060..1003 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 9697908..9697965 | 1060..1003 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:00:17 has no hits.
BS17862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:17 Download gff for
BS17862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31352-RA | 496..2916 | 17..2437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:22 Download gff for
BS17862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RA | 470..2890 | 17..2437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:27 Download gff for
BS17862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31352-RA | 496..2916 | 17..2437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:43 Download gff for
BS17862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RA | 470..2890 | 17..2437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:43 Download gff for
BS17862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9695587..9695653 | 2015..2081 | 100 | <- | Minus |
| 3R | 9696422..9696507 | 1929..2014 | 100 | <- | Minus |
| 3R | 9695282..9695523 | 2082..2323 | 100 | <- | Minus |
| 3R | 9696600..9696739 | 1789..1928 | 100 | <- | Minus |
| 3R | 9696966..9697139 | 1615..1788 | 100 | <- | Minus |
| 3R | 9695110..9695223 | 2324..2437 | 100 | <- | Minus |
| 3R | 9697208..9697761 | 1061..1614 | 100 | <- | Minus |
| 3R | 9697908..9697964 | 1004..1060 | 100 | <- | Minus |
| 3R | 9698318..9698989 | 332..1003 | 100 | <- | Minus |
| 3R | 9699051..9699363 | 17..331 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:22 Download gff for
BS17862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5522322..5522461 | 1789..1928 | 100 | <- | Minus |
| arm_3R | 5522688..5522861 | 1615..1788 | 100 | <- | Minus |
| arm_3R | 5521004..5521245 | 2082..2323 | 100 | <- | Minus |
| arm_3R | 5521309..5521375 | 2015..2081 | 100 | <- | Minus |
| arm_3R | 5522144..5522229 | 1929..2014 | 100 | <- | Minus |
| arm_3R | 5520832..5520945 | 2324..2437 | 100 | <- | Minus |
| arm_3R | 5522930..5523483 | 1061..1614 | 100 | <- | Minus |
| arm_3R | 5523630..5523686 | 1004..1060 | 100 | <- | Minus |
| arm_3R | 5524040..5524711 | 332..1003 | 100 | <- | Minus |
| arm_3R | 5524773..5525085 | 17..331 | 99 | | Minus |
BS17862.3prime Sequence
831 bp (798 high quality bases) assembled on 2007-05-30
> BS17862.3prime
AGGGNCNAGAAAGCTTCNAGACTTTCTGCCACGCCGCTTCAGCTCGTTGC
GTCGCCACTGGGGTAGCCGATAGAACTCCGACCTGGCGCACTGCAAGATG
TGTTCGAATTCGATGTCCGACAGATGGCGCTCTAGGTTACAGCGATCCAC
GTCCGAGGGCAGACGGTAGTTTGTGATTAGCAGTAGGTGATAGGGATAGA
TCTTGGCCGGCTCGTGCACCAGCATCGAATGGGACATGTTGGGCAGACTG
CGCCGGATGAGTCCGGCCTGCGGATAGTGGTAGGAGAGTGCTCCTGAGTA
AGTGCTCGAGGCGGGCAGGTCGCCGCCCATCAGAGCTCGCCTATCGCCCT
CGGTGATCGAGTCCACAGAAGCCTCCGATTTGCCGCAGCTCAAATCTGTG
CTGTGGGTCTTGTCGCCCAGTCCTCCATAGGAGAAGTCGGAGCTGAAGCC
ATTGCGTATATAGGGCAGAGTCGTCGTTTTGAATCCGTATCCGGGCTTGG
GCGGCGATCGGTAGGAATGTATGGCATTGTAGCTGGGCGCGTTTCCAAGC
GATTTGCCAAGCGAGCCACGGTAGCTGGTGGAGCGATCGAACATCTCGTC
CTCGTAGAAGGGCTTCTGGTGGTCCAGATTGCGCGATGGCGATGCTCCAA
TGGGCGATTCGTATCTCAATTTGTAGAGTGGCTCCTTGGAAGCGGAGGGC
GTCCTGGATGCGTTGCGCGGATCCAAATTGTTCTGCTTCCACTTCCTGTA
CTTGGCGTGCTCCTTGAGGTCCTTGGCAATCGCCGATCCGATGCCCGAGT
TAAGCTTTTCCAGCTGTTCGGCTTCGCGTTG
BS17862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31352-PA | 2421 | CG31352-RA | 1606..2407 | 831..30 | 4010 | 100 | Minus |
| CG31332-PC | 2355 | unc-115-RC | 1720..2327 | 831..224 | 3040 | 100 | Minus |
| CG31332-PA | 2307 | unc-115-RA | 1672..2279 | 831..224 | 3040 | 100 | Minus |
| CG31332-PB | 2250 | unc-115-RB | 1615..2222 | 831..224 | 3040 | 100 | Minus |
| CG31332-PD | 2283 | unc-115-RD | 1648..2255 | 831..224 | 3040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115a-RG | 3700 | CG31352-RG | 2161..2962 | 831..30 | 4010 | 100 | Minus |
| Unc-115a-RF | 3494 | CG31352-RF | 1955..2756 | 831..30 | 4010 | 100 | Minus |
| Unc-115a-RC | 3200 | CG31352-RC | 1997..2798 | 831..30 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9695282..9695524 | 130..372 | 1215 | 100 | Plus |
| 3R | 32079331 | 3R | 9689080..9689246 | 665..831 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 9696966..9697132 | 665..831 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 9687490..9687638 | 224..372 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 9688714..9688855 | 525..666 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 9696600..9696741 | 525..666 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 9695124..9695225 | 30..131 | 510 | 100 | Plus |
| 3R | 32079331 | 3R | 9688535..9688622 | 438..525 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 9696421..9696508 | 438..525 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 9687701..9687767 | 372..438 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 9695587..9695653 | 372..438 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 13:57:31 has no hits.
BS17862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:45 Download gff for
BS17862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31352-PA | 1606..2412 | 26..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:37 Download gff for
BS17862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RE | 2018..2824 | 26..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:15:58 Download gff for
BS17862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RC | 1997..2803 | 26..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:15:58 Download gff for
BS17862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9695119..9695223 | 26..129 | 98 | <- | Plus |
| 3R | 9695282..9695523 | 130..371 | 100 | <- | Plus |
| 3R | 9695587..9695653 | 372..438 | 100 | <- | Plus |
| 3R | 9696422..9696507 | 439..524 | 100 | <- | Plus |
| 3R | 9696600..9696739 | 525..664 | 100 | <- | Plus |
| 3R | 9696966..9697132 | 665..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:37 Download gff for
BS17862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5520841..5520945 | 26..129 | 98 | <- | Plus |
| arm_3R | 5521004..5521245 | 130..371 | 100 | <- | Plus |
| arm_3R | 5521309..5521375 | 372..438 | 100 | <- | Plus |
| arm_3R | 5522144..5522229 | 439..524 | 100 | <- | Plus |
| arm_3R | 5522322..5522461 | 525..664 | 100 | <- | Plus |
| arm_3R | 5522688..5522854 | 665..831 | 100 | | Plus |
BS17862.5prime Sequence
877 bp (817 high quality bases) assembled on 2007-05-30
> BS17862.5prime
GAAGTTATCACTTGACATGGGTAAACAAAAAATCTACTGTGCGAAATGCA
CGAAGAAGTGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCAC
AAGGCCTGCTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGG
ATTCTTCACAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGC
TGTACGGCACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTG
GTCAGCACCATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAA
GTGCAAGCAGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGG
AGGTGCTTTGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGC
CAGGCGACGGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCC
GACGAGAGCCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGG
CGCACCTCAAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAG
CTGCTGAAGGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGT
CTCTTGTTTCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACA
TGGGCAAAGACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTC
GGGGTGAAGTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCA
GGCGGGCGACAACCACCACTTCCATCCGACCTGTGCCCGCTGCACAAAGT
GCGGCGATCCCTTCGGCGACGGCGAGGAGATGTACCTGCAGGGCAGTTGC
ATCTGGCATCCGCGATGCGGTCCGGGT
BS17862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31352-PA | 2421 | CG31352-RA | 1..861 | 17..877 | 4255 | 99.7 | Plus |
| CG31332-PC | 2355 | unc-115-RC | 118..975 | 20..877 | 4240 | 99.7 | Plus |
| CG31332-PA | 2307 | unc-115-RA | 70..927 | 20..877 | 4240 | 99.7 | Plus |
| CG31332-PB | 2250 | unc-115-RB | 70..927 | 20..877 | 4240 | 99.7 | Plus |
| CG31332-PD | 2283 | unc-115-RD | 103..960 | 20..877 | 4240 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115a-RJ | 3299 | CG31352-RJ | 469..1330 | 16..877 | 4280 | 99.8 | Plus |
| Unc-115a-RH | 3176 | CG31352-RH | 469..1330 | 16..877 | 4280 | 99.8 | Plus |
| Unc-115a-RE | 3557 | CG31352-RE | 469..1330 | 16..877 | 4280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9690558..9691105 | 877..330 | 2710 | 99.6 | Minus |
| 3R | 32079331 | 3R | 9698444..9698991 | 877..330 | 2710 | 99.6 | Minus |
| 3R | 32079331 | 3R | 9691161..9691476 | 335..20 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9699047..9699362 | 335..20 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:14:53 has no hits.
BS17862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:42:50 Download gff for
BS17862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31352-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:21 Download gff for
BS17862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RA | 461..1330 | 6..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:48 Download gff for
BS17862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RE | 461..1330 | 6..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:48 Download gff for
BS17862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9691165..9691479 | 15..331 | 99 | | Minus |
| 3R | 9690558..9691103 | 332..877 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:21 Download gff for
BS17862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5516887..5517201 | 15..331 | 99 | | Minus |
| arm_3R | 5516280..5516825 | 332..877 | 99 | <- | Minus |
BS17862.pep Sequence
Translation from 16 to 2436
> BS17862.pep
MGKQKIYCAKCTKKCSGEVLRVADNHFHKACFQCCQCKKSLATGGFFTKD
NAYYCIPDYQRLYGTKCANCQQYVEGEVVSTMGKTYHQKCFTCSKCKQPF
KSGSKVTNTGKEVLCEQCVTGAPVSPSRQATGGGVSSPAPPAESPTRATA
HQQHGSVISHKAHLKEDYDPNDCAGCGELLKEGQALVALDRQWHVSCFRC
KACQAVLNGEYMGKDAVPYCEKCYQKGFGVKCAYCSRFISGKVLQAGDNH
HFHPTCARCTKCGDPFGDGEEMYLQGSAIWHPRCGPGPSESGIILNGGGG
TSSVVGGASNGNFTDTECDRMSSSALSEMYIRSRTPSFNGSLYSSSRKHY
RTVSPGLILREYGRPNAEDISRIYTYSYLTDAPHYLRKPIDPYDKTPLSP
HFHRPSSYATTASNAGSVAGSRPPSRPHSRTRSAMKVLVDAIRSETPRPK
SPGMNNEEPIELSHYPAAKKPPPGEQPKIERDDFPAPPYPYTDPERRRRY
SDTYKGVPASDDEDENVENGKPNGKVKNGEEQQRLQREAEQLEKLNSGIG
SAIAKDLKEHAKYRKWKQNNLDPRNASRTPSASKEPLYKLRYESPIGASP
SRNLDHQKPFYEDEMFDRSTSYRGSLGKSLGNAPSYNAIHSYRSPPKPGY
GFKTTTLPYIRNGFSSDFSYGGLGDKTHSTDLSCGKSEASVDSITEGDRR
ALMGGDLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYH
LLLITNYRLPSDVDRCNLERHLSDIEFEHILQCARSEFYRLPQWRRNELK
RRVKLF*
BS17862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115a-PA | 806 | CG31352-PA | 1..806 | 1..806 | 4395 | 100 | Plus |
| Unc-115a-PC | 839 | CG31352-PC | 34..839 | 1..806 | 4392 | 99.9 | Plus |
| Unc-115a-PG | 828 | CG31352-PG | 24..828 | 2..806 | 4390 | 100 | Plus |
| Unc-115a-PB | 844 | CG31352-PB | 40..844 | 2..806 | 4390 | 100 | Plus |
| Unc-115a-PE | 787 | CG31352-PE | 1..787 | 1..806 | 4269 | 97.6 | Plus |
