Clone BS17869 Report

Search the DGRC for BS17869

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptPrx3-RA
Protein status:BS17869.pep: full length peptide match
Sequenced Size:737

Clone Sequence Records

BS17869.5prime Sequence

735 bp (735 high quality bases) assembled on 2007-05-30

> BS17869.5prime
GAAGTTATCACTCTACATGTCTTTCGTAGCACGCTCACTGATTCGCAATG
TGCCGCTGATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCC
CGCCTCCTGCATCAAACCGCTCCCCTTGCGGCAGTCCGCGTCCAGCAACC
TGCTCCCGATTTCAAGGGTCTGGCTGTGGTGGACAACAGCTTCCAGGAGG
TTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTCTTCTTCTACCCA
CTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAGAG
GATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGG
ACTCCCACTTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGC
GGAGTGGGCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGAT
CTCTGCCGACTACGATGTGTTGCTGGACAAGGAGGGCATCTCGCTGCGCG
GCACCTTCATCATTGACCCCAATGGCATCCTGCGCCAGTACTCCATTAAT
GATTTGCCCGTGGGCCGATCCGTCGACGAGGTTCTGCGCCTGATCAAAGC
CTTCCAGTTCGTCGAGCAGCACGGAGAAGTCTGCCCGGCCAACTGGAATC
CCAACTCGAATCCGGCTACCATTAAGCCCGATGTGGAGGAGTCCAAGAAG
TACTTCAGCAAGCACGGCTAGAAGCTTTCTAGACC

BS17869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5826-PA 705 Prx5037-RA 1..705 17..721 3475 99.7 Plus
CG1633-PB 585 Jafrac1-RB 82..146 212..276 150 89.2 Plus
CG1633-PA 585 Jafrac1-RA 82..146 212..276 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 1017 CG5826-RA 144..849 17..722 3500 99.7 Plus
Jafrac1-RE 976 CG1633-RE 185..249 212..276 220 89.2 Plus
Jafrac1-RD 1080 CG1633-RD 289..353 212..276 220 89.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17545390..17545853 722..259 2305 99.8 Minus
3R 32079331 3R 17545910..17546051 258..117 695 99.3 Minus
3R 32079331 3R 17546183..17546249 116..50 335 100 Minus
X 23542271 X 13331203..13331267 212..276 220 89.2 Plus
Blast to na_te.dros performed on 2015-02-13 15:45:01 has no hits.

BS17869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:43:53 Download gff for BS17869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5826-PA 1..705 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:17 Download gff for BS17869.5prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..858 17..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:23:56 Download gff for BS17869.5prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..858 17..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:23:56 Download gff for BS17869.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17545381..17545853 259..730 98 <- Minus
3R 17545910..17546051 117..258 99 <- Minus
3R 17546183..17546249 50..116 100 <- Minus
3R 17546356..17546388 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:17 Download gff for BS17869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13371103..13371575 259..730 98 <- Minus
arm_3R 13371632..13371773 117..258 99 <- Minus
arm_3R 13371905..13371971 50..116 100 <- Minus
arm_3R 13372078..13372110 17..49 100   Minus

BS17869.3prime Sequence

735 bp (735 high quality bases) assembled on 2007-05-30

> BS17869.3prime
ATGGTCTAGAAAGCTTCTAGCCTTTCTGGCTGAAGTACTTCTTGGACTCC
TCCACATCGGGCTTAATGGTAGCCGGATTCGAGTTGGGATTCCAGTTCTC
CGGGCAGACTTCTCCGTGCTGCTCGACGAACTGGAAGGCTTTGATCAGGC
GCAGAACCTCGTCGACGGATCGGCCCACGGGCAAATCATTAATGGAGTAC
TGGCGCAGGATGCCATTGGGGTCAATGATGAAGGTGCCGCGCAGCGAGAT
GCCCTCCTTGTCCAGCAACACATCGTAGTCGGCAGAGATCTTCTTGGTCA
AATCGGAGAGGAGCGGGTACTTCAGCTGGCCCACTCCGCCGTTCTTGCGG
TCGACATTGCACCAGGTGAGATGGCTGAAGTGGGAGTCCACGGAAACGCC
CAGAACCTCGGTGTTAATGTCATGGAACTCCTTGATCCTCTCGCTAAATG
CAACAATTTCAGTGGGGCAAACGAATGTGAAATCCAGTGGGTAGAAGAAG
AGCACCAGGTACTTGCCCCTGTAGTCTTCCAGCTTAACCTCCTGGAAGCT
GTTGTCCACCACAGCCAGACCCTTGAAATCGGGAGCAGGTTGCTGGACGC
GGACTGCCGCAAGGGGAGCGGTTTGATGCAGGAGGCGGGCGGCAATCTGT
TTCTGCTGACTCAGGATGGCCTTGCCCATCAGCGGCACATTGCGAATCAG
TGAGCGTGCTACGAAAGACATGTCGACTGATAACT

BS17869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5826-PA 705 Prx5037-RA 1..693 721..29 3365 99.4 Minus
CG1633-PB 585 Jafrac1-RB 82..146 526..462 150 89.2 Minus
CG1633-PA 585 Jafrac1-RA 82..146 526..462 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 1017 CG5826-RA 144..849 721..16 3425 99 Minus
Jafrac1-RE 976 CG1633-RE 185..249 526..462 220 89.2 Minus
Jafrac1-RD 1080 CG1633-RD 289..353 526..462 220 89.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17545390..17545853 16..479 2230 98.7 Plus
3R 32079331 3R 17545910..17546051 480..621 695 99.3 Plus
3R 32079331 3R 17546183..17546249 622..688 335 100 Plus
X 23542271 X 13331203..13331267 526..462 220 89.2 Minus
Blast to na_te.dros performed on 2015-02-12 10:37:24 has no hits.

BS17869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:43:48 Download gff for BS17869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5826-PA 1..705 17..721 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:13 Download gff for BS17869.3prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..849 16..721 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:36 Download gff for BS17869.3prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..849 16..721 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:36 Download gff for BS17869.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17545390..17545853 16..479 98 <- Plus
3R 17545910..17546051 480..621 99 <- Plus
3R 17546183..17546249 622..688 100 <- Plus
3R 17546356..17546388 689..721 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:13 Download gff for BS17869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13371112..13371575 16..479 98 <- Plus
arm_3R 13371632..13371773 480..621 99 <- Plus
arm_3R 13371905..13371971 622..688 100 <- Plus
arm_3R 13372078..13372110 689..721 100   Plus

BS17869.complete Sequence

737 bp assembled on 2010-02-09

GenBank Submission: KX804504

> BS17869.complete
GAAGTTATCAGTCGACATGTCTTTCGTAGCACGCTCACTGATTCGCAATG
TGCCGCTGATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCC
CGCCTCCTGCATCAAACCGCTCCCCTTGCGGCAGTCCGCGTCCAGCAACC
TGCTCCCGATTTCAAGGGTCTGGCTGTGGTGGACAACAGCTTCCAGGAGG
TTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTCTTCTTCTACCCA
CTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAGAG
GATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGG
ACTCCCACTTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGC
GGAGTGGGCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGAT
CTCTGCCGACTACGATGTGTTGCTGGACAAGGAGGGCATCTCGCTGCGCG
GCACCTTCATCATTGACCCCAATGGCATCCTGCGCCAGTACTCCATTAAT
GATTTGCCCGTGGGCCGATCCGTCGACGAGGTTCTGCGCCTGATCAAAGC
CTTCCAGTTCGTCGAGCAGCACGGAGAAGTCTGCCCGGCCAACTGGAATC
CCAACTCGAATCCGGCTACCATTAAGCCCGATGTGGAGGAGTCCAAGAAG
TACTTCAGCAAGCACGGCTAGAAGCTTTCTAGACCAT

BS17869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 705 CG5826-PA 1..705 17..721 3495 99.7 Plus
Jafrac1-RE 585 CG1633-PE 82..146 212..276 220 89.2 Plus
Jafrac1-RD 585 CG1633-PD 82..146 212..276 220 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 1017 CG5826-RA 144..849 17..722 3500 99.7 Plus
Jafrac1-RE 976 CG1633-RE 185..249 212..276 220 89.2 Plus
Jafrac1-RD 1080 CG1633-RD 289..353 212..276 220 89.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17545390..17545853 722..259 2305 99.8 Minus
3R 32079331 3R 17545910..17546051 258..117 695 99.3 Minus
3R 32079331 3R 17546183..17546249 116..50 335 100 Minus
X 23542271 X 13331203..13331267 212..276 220 89.2 Plus
Blast to na_te.dros performed on 2014-11-28 03:06:45 has no hits.

BS17869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:31 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5037-RA 1..705 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:09 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5037-RA 122..826 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:33 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..848 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:31 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5037-RA 122..836 17..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:08 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..848 17..721 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:08 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17545910..17546051 117..258 99 <- Minus
3R 17546183..17546249 50..116 100 <- Minus
3R 17546356..17546388 17..49 100   Minus
3R 17545391..17545853 259..721 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:33 Download gff for BS17869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13371113..13371575 259..721 99 <- Minus
arm_3R 13371632..13371773 117..258 99 <- Minus
arm_3R 13371905..13371971 50..116 100 <- Minus
arm_3R 13372078..13372110 17..49 100   Minus

BS17869.pep Sequence

Translation from 16 to 720

> BS17869.pep
MSFVARSLIRNVPLMGKAILSQQKQIAARLLHQTAPLAAVRVQQPAPDFK
GLAVVDNSFQEVKLEDYRGKYLVLFFYPLDFTFVCPTEIVAFSERIKEFH
DINTEVLGVSVDSHFSHLTWCNVDRKNGGVGQLKYPLLSDLTKKISADYD
VLLDKEGISLRGTFIIDPNGILRQYSINDLPVGRSVDEVLRLIKAFQFVE
QHGEVCPANWNPNSNPATIKPDVEESKKYFSKHG*

BS17869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-PA 234 CG5826-PA 1..234 1..234 1215 100 Plus
Jafrac2-PC 242 CG1274-PC 43..241 32..233 641 60.4 Plus
Jafrac2-PB 242 CG1274-PB 43..241 32..233 641 60.4 Plus
Jafrac2-PA 242 CG1274-PA 43..241 32..233 641 60.4 Plus
Jafrac1-PE 194 CG1633-PE 3..190 41..230 594 57.9 Plus