Clone Sequence Records
BS17870.complete Sequence
3134 bp assembled on 2009-12-07
GenBank Submission: KX805208
> BS17870.complete
GAAGTTATCAGTCGACATGCAGAACGTTATACTTACATCGCAATACTATT
GGTCACGTAGGGCTAGTCAAGATGTTTCCAGTTTGTCACGCAGCGTTGAC
AATTTGGCGATACCCGTGCGCAGGAGCAAATCGCGCAGCGTGGATCACGG
CCTTGCGGCTCCATTCGACTTGGACTCACTCCGCTCCAAAGTGGAGCAGC
GCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTCATTGCCCACC
ATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCCTGACCTCCGT
GGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCACCTCAACCGGC
TGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGTGCCGGACAAG
AGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACGCGGACGGTGC
CAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTGTCCGGCGACG
AGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGGATCCCCAAAA
CCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGCAGCAGGCGGA
GGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAGCGCTTCCTCA
AGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGTGGGCGGCGTC
CTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACGTCAGCGATCC
CCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATTGCGCCCATGG
AGCTGGTGGTCAACGCCGCCATCTTCCACGACATTGCGCACATGCGAGTG
GCCGGAGGAGCAGGTCAGGGCCTGAACTCCGCCTCGGGAGACGCGGAGAA
ACCGGAAATCTACTATCCCAAACCAGTATTAGTCGAAGAAGACTCCAAGG
AGCTACCCGAGCAGCAGTCGCTGCTGGGCGAAGACGGTAATAAGCGCTTA
GATGCAGAAATAGGGTCGCTGGAAATCGCTGACGACCAAGAGTCGCTTTG
CTCCAGCACTGGACGCGATGGCGACGCGTTTCCCAAAGCCTTCGACCGCG
AACGTGTGGAGGACTCTTCTATGGAAGCCAAAGATAGCGCTAAGACTGAC
GCTCTAGACGATGAAGACAAGAAGGCCGGCCTGGGCCTCTCCAGCACTCG
CTCCACCCTCGAGGAGCGGCGCAAGAGTTTGTTGGATCACCACTGGGCCA
TTCCGAGCAAAGACCGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAA
GATGAGGGCGACAACGAGTCAAACGTTACCGTAGACAGTGGCGCACGAGT
CCAGGATCCGCACTCGGCCAATAGTTCGGTCAGCGGCGTGCCGCTTAGCC
AGCCCCCTGTGGCTGCTGCTGCAGCTGCCGCTGCCGTCGCACCCGCCTCC
GCCGTCGTTCCTCTGCCTCCCTCGGGCATTGATCTGGAGCACTTGGAGCA
GCTGTCCAAGCAGTCGTGCTACGACTCGGGCATCGATATCCGCGAGCCCG
TTCCCAACGTACAGCCGATACCAAAAAAAACCGTCTACAGCGACGCGGAC
ATTGTCCTCAGCTCCGACTGGGTACCACCGAAAACCATTGTGCCGACGCA
CTTCAGCGAGTCCCCGCCGCGCAGCACCATCCTCGGCCAGAGTCTCGACG
CCGGCACAGGAGGCGCAGGGGGCGTCCGTAAGAAGACCTCAAGCGTGAGC
TTCAGCGTCGACGACGAGGCCGCCCAGCAGGCTCAGGCCCAGTCGGCTGC
ACTGGCTGTCACAGACAAGCAGGCCGACAAGAAGAACAAGATGCTTAAAC
GTCTCTCATACCCCCTGACCTGGGTGGAGGGCTTGACTGGGGAGGGTGGT
GCCGTGCCGCCCGGCGGCGTGGGCAGTGGAAGCCTGAACAAGTCGGGAGA
CACAGACTCGGCGCCCAACACGGGTGACTCCAACCAAAGTGTATTTTCGA
AAGTATTCTCAAGACGTTCCTCAATCGGTACCTTTATTCGTCCTCACTCC
TCGGAGGGCACTTCGTCCAGCACCAAGCTGAAGGAGGCCAAGCAGGCGCC
CAAGTTGGACTACCGCTCCATGGTCTCCATGGACGACAAGCCGGAACTCT
TTATCAGTGTGGACAAACTCATCCCACGACCGGCTCGAGCCTGCCTTGAC
CCACCATTGTATCTACGCCTGCGCATGGGCAAGCCCATCGGCAAGGCCAT
TCCGCTGCCAACCTCTGTCATGTCCTACGGGAAGAACAAGTTGCGCGCTG
AGTACTGGTTCAGTGTGCCAAAGAATCGCGTTGATGAGCTCTATCGCTTC
ATAAACACCTGGGTGAAACACCTGTACGGTGAGCTGGACGAAGAGCAGAT
CAAGGCGCGTGGCTTCGAGCTGATTCAAGAGGACACCGAGTGGACCAAGA
GCGGCACGACCAAAGCCGGCATGGGAGGCGGTAGCCAGGATGGCGAGGAG
ATTAGCGACCTGACCCGCGAGTCCTGGGAGGTGCTGTCAATGAGCACAGA
TGAATATCGCAAGACCTCGCTCTTTGCCACCGGTTCCTTCGACCTGGACT
TCCCCATACCAGACCTGATCGGCAAGACAGAAATCCTTACAGAGGAGCAT
CGCGAGAAGCTCTGTTCACATCTGCCGGCTAGAGCCGAGGGATACTCCTG
GTCCCTGATCTTCAGCACCTCACAACATGGTTTCGCACTGAACTCCCTGT
ACCGCAAAATGGCGCGTCTGGAGAGTCCAGTTCTGATTGTCATTGAGGAT
ACGGAGCACAACGTATTTGGTGCCCTCACCTCCTGCTCACTGCATGTGTC
GGATCACTTTTACGGCACCGGTGAGTCCCTGCTCTACAAGTTTAACCCCA
GCTTCAAGGTGTTCCATTGGACTGGCGAGAATATGTACTTCATCAAAGGA
AACATGGAGAGCCTTTCGATTGGCGCTGGAGACGGTCGTTTTGGCCTGTG
GCTGGATGGTGATCTGAACCAGGGACGATCGCAACAGTGCAGCACATACG
GCAATGAGCCTCTGGCGCCACAAGAAGACTTTGTTATCAAAACACTCGAA
TGCTGGGCATTTGTTTAAAAGCTTTCTAGACCAT
BS17870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RG | 3102 | CG32464-PG | 1..3102 | 17..3118 | 15495 | 100 | Plus |
| mtd-RY | 3477 | CG32464-PY | 875..3477 | 516..3118 | 13015 | 100 | Plus |
| mtd-RAA | 2616 | CG32464-PAA | 30..2616 | 514..3118 | 12720 | 99.3 | Plus |
| mtd-RY | 3477 | CG32464-PY | 768..874 | 121..227 | 520 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RG | 4780 | CG32464-RG | 679..3780 | 17..3118 | 15495 | 100 | Plus |
| mtd-RY | 4905 | CG32464-RY | 1303..3905 | 516..3118 | 13015 | 100 | Plus |
| mtd-RAA | 3789 | CG32464-RA | 203..2789 | 514..3118 | 12720 | 99.3 | Plus |
| mtd-RY | 4905 | CG32464-RY | 1196..1302 | 121..227 | 520 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5294306..5294880 | 1840..1266 | 2875 | 100 | Minus |
| 3R | 32079331 | 3R | 5296147..5296637 | 1004..514 | 2455 | 100 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 515..228 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5292637..5292842 | 2533..2328 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 5294062..5294236 | 2013..1839 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 5274149..5274318 | 2982..2813 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 5274732..5274895 | 2815..2652 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5292998..5293160 | 2328..2166 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5295641..5295797 | 1266..1110 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 5293219..5293372 | 2165..2012 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 5273947..5274082 | 3118..2983 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 5274966..5275089 | 2652..2529 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 5295856..5295964 | 1112..1004 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299576 | 228..121 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5304110..5304183 | 124..51 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:00:11 has no hits.
BS17870.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:16 Download gff for
BS17870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RG | 679..3778 | 17..3116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:21 Download gff for
BS17870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RG | 679..3778 | 17..3116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:26 Download gff for
BS17870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RG | 679..3778 | 17..3116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:40 Download gff for
BS17870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RG | 679..3778 | 17..3116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:40 Download gff for
BS17870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5293219..5293370 | 2014..2165 | 100 | <- | Minus |
| 3R | 5294062..5294234 | 1841..2013 | 100 | <- | Minus |
| 3R | 5295641..5295795 | 1112..1266 | 100 | <- | Minus |
| 3R | 5295857..5295963 | 1005..1111 | 100 | <- | Minus |
| 3R | 5292640..5292841 | 2329..2530 | 100 | <- | Minus |
| 3R | 5273949..5274082 | 2983..3116 | 100 | <- | Minus |
| 3R | 5274149..5274318 | 2813..2982 | 100 | <- | Minus |
| 3R | 5274735..5274894 | 2653..2812 | 100 | <- | Minus |
| 3R | 5274966..5275087 | 2531..2652 | 100 | <- | Minus |
| 3R | 5292998..5293160 | 2166..2328 | 100 | <- | Minus |
| 3R | 5294306..5294879 | 1267..1840 | 100 | <- | Minus |
| 3R | 5296147..5296635 | 516..1004 | 100 | <- | Minus |
| 3R | 5298202..5298489 | 228..515 | 100 | <- | Minus |
| 3R | 5299470..5299573 | 124..227 | 99 | <- | Minus |
| 3R | 5304111..5304182 | 52..123 | 100 | <- | Minus |
| 3R | 5305711..5305745 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:21 Download gff for
BS17870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1100457..1100616 | 2653..2812 | 100 | <- | Minus |
| arm_3R | 1100688..1100809 | 2531..2652 | 100 | <- | Minus |
| arm_3R | 1118362..1118563 | 2329..2530 | 100 | <- | Minus |
| arm_3R | 1118720..1118882 | 2166..2328 | 100 | <- | Minus |
| arm_3R | 1118941..1119092 | 2014..2165 | 100 | <- | Minus |
| arm_3R | 1119784..1119956 | 1841..2013 | 100 | <- | Minus |
| arm_3R | 1099671..1099804 | 2983..3116 | 100 | <- | Minus |
| arm_3R | 1099871..1100040 | 2813..2982 | 100 | <- | Minus |
| arm_3R | 1120028..1120601 | 1267..1840 | 100 | <- | Minus |
| arm_3R | 1121363..1121517 | 1112..1266 | 100 | <- | Minus |
| arm_3R | 1121579..1121685 | 1005..1111 | 100 | <- | Minus |
| arm_3R | 1121869..1122357 | 516..1004 | 100 | <- | Minus |
| arm_3R | 1123924..1124211 | 228..515 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 124..227 | 99 | <- | Minus |
| arm_3R | 1129833..1129904 | 52..123 | 100 | <- | Minus |
| arm_3R | 1131433..1131467 | 17..51 | 100 | | Minus |
BS17870.3prime Sequence
882 bp (855 high quality bases) assembled on 2007-05-30
> BS17870.3prime
ATGGTCTAGAAAGCTTTTAACCATTTGCCCAGCATTCGAGTGTTTTGATA
ACAAAGTCTTCTTGTGGCGCCAGAGGCTCATTGCCGTATGTGCTGCACTG
TTGCGATCGTCCCTGGTTCAGATCACCATCCAGCCACAGGCCAAAACGAC
CGTCTCCAGCGCCAATCGAAAGGCTCTCCATGTTTCCTTTGATGAAGTAC
ATATTCTCGCCAGTCCAATGGAACACCTTGAAGCTGGGGTTAAACTTGTA
GAGCAGGGACTCACCGGTGCCGTAAAAGTGATCCGACACATGCAGTGAGC
AGGAGGTGAGGGCACCAAATACGTTGTGCTCCGTATCCTCAATGACAATC
AGAACTGGACTCTCCAGACGCGCCATTTTGCGGTACAGGGAGTTCAGTGC
GAAACCATGTTGTGAGGTGCTGAAGATCAGGGACCAGGAGTATCCCTCGG
CTCTAGCCGGCAGATGTGAACAGAGCTTCTCGCGATGCTCCTCTGTAAGG
ATTTCTGTCTTGCCGATCAGGTCTGGTATGGGGAAGTCCAGGTCGAAGGA
ACCGGTGGCAAAGAGCGAGGTCTTGCGATATTCATCTGTGCTCATTGACA
GCACCTCCCAGGACTCGCGGGTCAGGTCGCTAATCTCCTCGCCATCCTGG
CTACCGCCTCCCATGCCGGCTTTGGTCGTGCCGCTCTTGGTCCACTCGGT
GTCCTCTTGAATCAGCTCGAAGCCACGCGCCTTGATCTGCTCTTCGTCCA
GCTCACCGTACAGGTGTTTCACCCAGGTGTTTATGAAGCGATAGAGCTCA
TCAACGCGATTCTTTGGCACACTGAACCAGTACTCAGCGCGCAACTTGTT
CTTCCCGTANGACATGACAGAGGTTGGCAGCG
BS17870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32464-PO | 3078 | l(3)82Fd-RO | 2213..3069 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PP | 3945 | l(3)82Fd-RP | 3080..3936 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PN | 3813 | l(3)82Fd-RN | 2948..3804 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PM | 3039 | l(3)82Fd-RM | 2174..3030 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PG | 3102 | l(3)82Fd-RG | 2237..3093 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PB | 3813 | l(3)82Fd-RB | 2948..3804 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PJ | 3813 | l(3)82Fd-RJ | 2948..3804 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PL | 3813 | l(3)82Fd-RL | 2948..3804 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PF | 2610 | l(3)82Fd-RF | 1745..2601 | 882..26 | 4266 | 99.8 | Minus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 2578..3159 | 607..26 | 2910 | 100 | Minus |
| CG32464-PA | 633 | l(3)82Fd-RA | 43..624 | 607..26 | 2910 | 100 | Minus |
| CG32464-PC | 804 | l(3)82Fd-RC | 216..795 | 605..26 | 2900 | 100 | Minus |
| CG32464-PI | 642 | l(3)82Fd-RI | 54..633 | 605..26 | 2900 | 100 | Minus |
| CG32464-PH | 579 | l(3)82Fd-RH | 1..570 | 595..26 | 2850 | 100 | Minus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 2213..2490 | 882..605 | 1371 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RAA | 3789 | CG32464-RA | 1924..2780 | 882..26 | 4274 | 99.9 | Minus |
| mtd-RY | 4905 | CG32464-RY | 3040..3896 | 882..26 | 4274 | 99.9 | Minus |
| mtd-RU | 5169 | CG32464-RU | 3304..4160 | 882..26 | 4274 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5292637..5292842 | 602..807 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 5274149..5274318 | 153..322 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 5274732..5274895 | 320..483 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 5273956..5274082 | 26..152 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 5274966..5275089 | 483..606 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 5292998..5293073 | 807..882 | 369 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:08:16 has no hits.
BS17870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:43:58 Download gff for
BS17870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32464-PM | 2174..3039 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:44:02 Download gff for
BS17870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RU | 3304..4169 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:57 Download gff for
BS17870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RU | 3304..4169 | 17..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:57 Download gff for
BS17870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5273947..5274082 | 17..152 | 97 | <- | Plus |
| 3R | 5274149..5274318 | 153..322 | 100 | <- | Plus |
| 3R | 5274735..5274894 | 323..482 | 100 | <- | Plus |
| 3R | 5274966..5275087 | 483..604 | 100 | <- | Plus |
| 3R | 5292640..5292841 | 605..806 | 100 | <- | Plus |
| 3R | 5292998..5293073 | 807..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:44:02 Download gff for
BS17870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1099871..1100040 | 153..322 | 100 | <- | Plus |
| arm_3R | 1100457..1100616 | 323..482 | 100 | <- | Plus |
| arm_3R | 1100688..1100809 | 483..604 | 100 | <- | Plus |
| arm_3R | 1099669..1099804 | 17..152 | 97 | <- | Plus |
| arm_3R | 1118362..1118563 | 605..806 | 100 | <- | Plus |
| arm_3R | 1118720..1118795 | 807..882 | 98 | | Plus |
BS17870.5prime Sequence
848 bp (809 high quality bases) assembled on 2007-05-30
> BS17870.5prime
GAAGTTATCACTCTACATGCAGAACGTTATACTTACATCGCAATACTATT
GGTCACGTAGGGCTAGTCAAGATGTTTCCAGTTTGTCACGCAGCGTTGAC
AATTTGGCGATACCCGTGCGCAGGAGCAAATCGCGCAGCGTGGATCACGG
CCTTGCGGCTCCATTCGACTTGGACTCACTCCGCTCCAAAGTGGAGCAGC
GCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTCATTGCCCACC
ATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCCTGACCTCCGT
GGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCACCTCAACCGGC
TGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGTGCCGGACAAG
AGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACGCGGACGGTGC
CAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTGTCCGGCGACG
AGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGGATCCCCAAAA
CCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGCAGCAGGCGGA
GGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAGCGCTTCCTCA
AGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGTGGGCGGCGTC
CTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACGTCAGCGATCC
CCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATTGCGCCCATGG
AGCTGGTGGTCAACGCCGCCATCTTCCACGACATTGCGCACATGCGAG
BS17870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32464-PO | 3078 | l(3)82Fd-RO | 1..832 | 17..848 | 4135 | 99.8 | Plus |
| CG32464-PG | 3102 | l(3)82Fd-RG | 1..832 | 17..848 | 4135 | 99.8 | Plus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 1..832 | 17..848 | 4135 | 99.8 | Plus |
| CG32464-PP | 3945 | l(3)82Fd-RP | 770..1567 | 51..848 | 3965 | 99.8 | Plus |
| CG32464-PN | 3813 | l(3)82Fd-RN | 770..1567 | 51..848 | 3965 | 99.8 | Plus |
| CG32464-PB | 3813 | l(3)82Fd-RB | 770..1567 | 51..848 | 3965 | 99.8 | Plus |
| CG32464-PJ | 3813 | l(3)82Fd-RJ | 770..1567 | 51..848 | 3965 | 99.8 | Plus |
| CG32464-PL | 3813 | l(3)82Fd-RL | 770..1567 | 51..848 | 3965 | 99.8 | Plus |
| CG32464-PD | 2037 | l(3)82Fd-RD | 168..892 | 124..848 | 3600 | 99.8 | Plus |
| CG32464-PM | 3039 | l(3)82Fd-RM | 172..793 | 227..848 | 3110 | 100 | Plus |
| CG32464-PF | 2610 | l(3)82Fd-RF | 30..364 | 514..848 | 1675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RK | 4502 | CG32464-RK | 335..1166 | 17..848 | 4145 | 99.9 | Plus |
| mtd-RG | 4780 | CG32464-RG | 679..1510 | 17..848 | 4145 | 99.9 | Plus |
| mtd-RO | 4332 | CG32464-RO | 255..1086 | 17..848 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5296303..5296637 | 848..514 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 515..228 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299576 | 228..121 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5304110..5304183 | 124..51 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 5305709..5305745 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:00:48 has no hits.
BS17870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:03 Download gff for
BS17870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32464-PO | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:32 Download gff for
BS17870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RO | 248..1086 | 10..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:01 Download gff for
BS17870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RO | 248..1086 | 10..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:01 Download gff for
BS17870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5299470..5299573 | 124..227 | 99 | <- | Minus |
| 3R | 5304111..5304182 | 52..123 | 100 | <- | Minus |
| 3R | 5305711..5305752 | 10..51 | 95 | | Minus |
| 3R | 5296303..5296635 | 516..848 | 100 | <- | Minus |
| 3R | 5298202..5298489 | 228..515 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:32 Download gff for
BS17870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1122025..1122357 | 516..848 | 100 | <- | Minus |
| arm_3R | 1123924..1124211 | 228..515 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 124..227 | 99 | <- | Minus |
| arm_3R | 1129833..1129904 | 52..123 | 100 | <- | Minus |
| arm_3R | 1131433..1131474 | 10..51 | 95 | | Minus |
BS17870.pep Sequence
Translation from 16 to 3117
> BS17870.pep
MQNVILTSQYYWSRRASQDVSSLSRSVDNLAIPVRRSKSRSVDHGLAAPF
DLDSLRSKVEQRFESVDKLSRQKSSLPTIPTISYTVGNRDTLTSVAARFD
TTPSELTHLNRLNSSFIYPGQQLLVPDKSAKDDASSSSTHDADGASLSGK
SSPVERKLSGDESREKDILEGLRPGSPKPGHIERVGGSSQQQQAEEEANK
SDDPVITQRFLKINVRHITDGQGVVGGVLLVTPNAVMFDPNVSDPLVIEH
GPESYGVIAPMELVVNAAIFHDIAHMRVAGGAGQGLNSASGDAEKPEIYY
PKPVLVEEDSKELPEQQSLLGEDGNKRLDAEIGSLEIADDQESLCSSTGR
DGDAFPKAFDRERVEDSSMEAKDSAKTDALDDEDKKAGLGLSSTRSTLEE
RRKSLLDHHWAIPSKDRYCLSNSRRSSEDEGDNESNVTVDSGARVQDPHS
ANSSVSGVPLSQPPVAAAAAAAAVAPASAVVPLPPSGIDLEHLEQLSKQS
CYDSGIDIREPVPNVQPIPKKTVYSDADIVLSSDWVPPKTIVPTHFSESP
PRSTILGQSLDAGTGGAGGVRKKTSSVSFSVDDEAAQQAQAQSAALAVTD
KQADKKNKMLKRLSYPLTWVEGLTGEGGAVPPGGVGSGSLNKSGDTDSAP
NTGDSNQSVFSKVFSRRSSIGTFIRPHSSEGTSSSTKLKEAKQAPKLDYR
SMVSMDDKPELFISVDKLIPRPARACLDPPLYLRLRMGKPIGKAIPLPTS
VMSYGKNKLRAEYWFSVPKNRVDELYRFINTWVKHLYGELDEEQIKARGF
ELIQEDTEWTKSGTTKAGMGGGSQDGEEISDLTRESWEVLSMSTDEYRKT
SLFATGSFDLDFPIPDLIGKTEILTEEHREKLCSHLPARAEGYSWSLIFS
TSQHGFALNSLYRKMARLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYG
TGESLLYKFNPSFKVFHWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDL
NQGRSQQCSTYGNEPLAPQEDFVIKTLECWAFV*
BS17870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-PG | 1033 | CG32464-PG | 1..1033 | 1..1033 | 5325 | 100 | Plus |
| mtd-PO | 1025 | CG32464-PO | 1..1025 | 1..1033 | 5262 | 99.2 | Plus |
| mtd-PJ | 1270 | CG32464-PJ | 258..1270 | 13..1033 | 5195 | 99.2 | Plus |
| mtd-PB | 1270 | CG32464-PB | 258..1270 | 13..1033 | 5195 | 99.2 | Plus |
| mtd-PN | 1270 | CG32464-PN | 258..1270 | 13..1033 | 5195 | 99.2 | Plus |
