Clone BS17873 Report

Search the DGRC for BS17873

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG8202-RA
Protein status:BS17873.pep: gold
Sequenced Size:2861

Clone Sequence Records

BS17873.3prime Sequence

961 bp (812 high quality bases) assembled on 2007-05-30

> BS17873.3prime
ATGGNCTAGAAAGCTTTCACCCTCTGCGCACGCGCAGTAGCAGTTTGGCA
ATAGTTTGAGCCCTTATGGGTGATGCATCCTTTATTTGCTTGTATATGAT
CTCTACACTGCGCAGAGTTTGGGGTAGTGTTTTCACATCCAATTGTGATT
GTGCCTTGTTAGCTAGGAGCCACAGATTGACTGCCAATTGAGCGATAGTT
TCCCTCTCCAGATCAGCGTACTTTACAATCCTTAAAAAAAGTTCCAGGGC
TAGCTCCGCTTGCGATCTTTGCTGCTGCGCTACTCCCAACGATTTCAGCT
GCAGAAGAATGGCATCAACAACCTGAGCGCACATATTGTTTACCTCCTGC
AAGAATTTGGGGTCGTGGCCATACAAATCGTCATTGGACACCACTCCTTT
TATATGATAGGGAAACCTTTCCAGACTCTGCACATACAGCATATCGAGGG
AATGCAGATAGATGATACTCGGCGCTGAGCTGTCAACTTTGAATTTATGT
CTGCCAACCACTTCTAGCAGAAGGCGAAGAAAATAGAGGACACCCTGTTC
CGGACTATCTGGTACCACGATTAATGTGGCCAGGATATTACACATATACG
AGACAAGGAATGGCTCTAAGCTGCGAGGCTTTCCATCAAAGTCCACCGTG
GCAGCGGGCAACTCATTAACCAATTGCAAAGCGGCCTCAAAGCAAGCATC
AGCTTGTCCCAGACAGAGATGCTGCAGAGCCAGCTGTCCGCATAGTAAGT
ACAAATTCATTTGCTGCTGGACAGCTTCAATGCTGGGAATGGTGATGAAG
CAGTAGGCGATGCAGGCCTTAACAAAACCCGTTGATTTCGAACGGTTTCG
GGTGGCTAACTTGCANGCCGCATGCACCAGAGTAACGTATACTGCGTCCA
GGTTGCTGAACGTGCCCCGCGCCTCCACATAAAAACTTAGCTGCTGCTCC
AAGTCATTTCC

BS17873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-PA 2829 CG8202-RA 1885..2822 961..24 4671 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 3092 CG8202-RA 1927..2864 961..24 4679 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8734808..8735118 704..394 1555 100 Minus
3R 32079331 3R 8735173..8735443 395..125 1355 100 Minus
3R 32079331 3R 8734493..8734751 961..703 1284 99.6 Minus
3R 32079331 3R 8735509..8735609 124..24 505 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:14:58 has no hits.

BS17873.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:19 Download gff for BS17873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-PA 1885..2829 17..961 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:23 Download gff for BS17873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 1927..2871 17..961 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:59 Download gff for BS17873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 1927..2871 17..961 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:59 Download gff for BS17873.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8734493..8734751 703..961 99 -> Minus
3R 8734810..8735118 394..702 100 -> Minus
3R 8735175..8735443 125..393 100 -> Minus
3R 8735509..8735616 17..124 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:23 Download gff for BS17873.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4560215..4560473 703..961 99 -> Minus
arm_3R 4560532..4560840 394..702 100 -> Minus
arm_3R 4560897..4561165 125..393 100 -> Minus
arm_3R 4561231..4561338 17..124 97   Minus

BS17873.5prime Sequence

638 bp (637 high quality bases) assembled on 2007-05-30

> BS17873.5prime
GAAGTTATCACTCGACATGGCGAACTTGGAATGGGTGTGCGTGCCGCGAT
GCTACGAGGTCCGGAAGAATTGCCTGACTGGGCAGGCCACGCTGGAGCAT
CCCCTAAAGCAGCGGACGGTGACGGTGGTGGACAGCAATCCCTTGAGCCG
AGCTCTAGAGGGCACAGATCCGCTCTCGCAGTTTGCACGCCAAGATGATG
AGCTCAACGATCCGCTCAGTCAAATGGTCAGCGAATTCGATCTCAAGTCG
AAGCGTCGTGAACGGGACCGAACGGAGCCCGAGGACAACACACTGCAGTG
GAGCAGCCGACGACTAGGCATCCTCAACCGCTTTACAACCAATGAGAAGC
TATCGCTGTCTACCAGCTTTCTGGTGTCATCTGGTAGCCTGGATGGCGGC
AACGAAAGCATTAAAGCACAAACGGTGGTGGCCGACAAGACAAAGTTTCG
CTTGGAGCAGTTAGACCACTTCGACGATGGCAGCATGCGTCACATGATGG
ATCTTACTCAGCAGGAGTACATTCAGCGGTTTGAGCAACTCAAGCAGGAG
CTGATCCAGTCCTGGCACAACGATCAGCGAGTAAAAGCGTTGAAGATAGC
CATACAGTGTGCCAAAATGCTAGCGGACACCACTGTGC

BS17873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-PA 2829 CG8202-RA 1..622 17..638 3110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 3092 CG8202-RA 43..664 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8732766..8732993 411..638 1140 100 Plus
3R 32079331 3R 8732544..8732719 239..414 865 99.4 Plus
3R 32079331 3R 8732369..8732484 124..239 580 100 Plus
3R 32079331 3R 8732215..8732310 33..128 480 100 Plus
Blast to na_te.dros performed 2015-02-13 06:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 4458..4502 415..459 108 71.1 Plus

BS17873.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:26 Download gff for BS17873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-PA 1..622 17..638 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:05 Download gff for BS17873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 34..664 9..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:15:28 Download gff for BS17873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 34..664 9..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:15:28 Download gff for BS17873.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8732216..8732306 34..124 100 -> Plus
3R 8732370..8732483 125..238 100 -> Plus
3R 8732544..8732715 239..410 100 -> Plus
3R 8732766..8732993 411..638 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:05 Download gff for BS17873.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4557938..4558028 34..124 100 -> Plus
arm_3R 4558092..4558205 125..238 100 -> Plus
arm_3R 4558266..4558437 239..410 100 -> Plus
arm_3R 4558488..4558715 411..638 100   Plus

BS17873.complete Sequence

2861 bp assembled on 2009-12-07

GenBank Submission: KX801784

> BS17873.complete
GAAGTTATCAGTCGACATGGCGAACTTGGAATGGGTGTGCGTGCCGCGAT
GCTACGAGGTCCGGAAGAATTGCCTGACTGGGCAGGCCACGCTGGAGCAT
CCCCTAAAGCAGCGGACGGTGACGGTGGTGGACAGCAATCCCTTGAGCCG
AGCTCTAGAGGGCACAGATCCGCTCTCGCAGTTTGCACGCCAAGATGATG
AGCTCAACGATCCGCTCAGTCAAATGGTCAGCGAATTCGATCTCAAGTCG
AAGCGTCGTGAACGGGACCGAACGGAGCCCGAGGACAACACACTGCAGTG
GAGCAGCCGACGACTAGGCATCCTCAACCGCTTTACAACCAATGAGAAGC
TATCGCTGTCTACCAGCTTTCTGGTGTCATCTGGTAGCCTGGATGGCGGC
AACGAAAGCATTAAAGCACAAACGGTGGTGGCCGACAAGACAAAGTTTCG
CTTGGAGCAGTTAGACCACTTCGACGATGGCAGCATGCGTCACATGATGG
ATCTTACTCAGCAGGAGTACATTCAGCGGTTTGAGCAACTCAAGCAGGAG
CTGATCCAGTCCTGGCACAACGATCAGCGAGTAAAAGCGTTGAAGATAGC
CATACAGTGTGCCAAAATGCTAGCGGACACCACTGTGCTGCAATTCTATC
CGAGTCAGTACGTTCTTATCACTGATATACTGGATGTTTTTGGAAAATTG
GTATACGAACGACTGCGTGCTAAGGCCTCTGGAGATCCTGCCGCATCGGC
GGCCACATTAGAGCGGGAACGGGAAGCTGCCCGGGATACGTGCCAGAATT
GGTTTTATAAGATCGCCTCGATTCGTGAGTTACTGCCGCGTTTTTACTTG
GAGCTGTCAATATTCAAGTGCTACGAGTTCCTGTCATCATCGCGCGAGGA
GTATGAGCGCATTTTGCAACGTTTGACCCATCAACTGAGGGGTATAGCTG
ATCCTTTGGTATCGAGCTATGCCCGCTGCTACTTGGTGCGCATGGGCGTT
ACCCTAACGTCGAGTAAGACATACATAAGAGAGAACTTTGCCGACCTGTT
CCTCATATATCCTCAGATCTTTCGCTTCGTGGCCCGCTTTAATCTGCATC
CGGAAATCGTCACCGCCAGCTCCTACCTACAGCTATATGCCCCAGCCTTT
GACTACATGCTTCTCTGCCTTGTTCACAAAAGCGAACTGCACACCCAGGA
TATTCTTAATGAGTGCAAGCAGTTGAAGAATAATGGTGCTATTCTGATGT
CTGTTTTAAGTTCCTTCAACTCAGAGTTCATTGCAACAAATGCATTAGAG
TTTATAGCGCTAATTAATGCTTCCGAAACGCCCGGAATCTCCAAGTCCCA
GTTGCTGCGCTCGCTGGGAAGCTGCGTTAGCAGCTGCCCTCCTCTACAGG
AGCAGCGTGTAACTTTTCTGAAGGCTGCCTTCGAGACGATCAACAAGTTG
ACTGATCCAAATGAGTATATAAACTGTGTGGAAACATGGGCTGTCTTTGT
ATCACAGTATTTTACGATACACGAGGTAAACAGATTGCTAGGAGAACTGA
ATACGCGAATGTGTCTTGGCAAAGCCTATGAAAAGCACTATTCCCAATTG
CAAAACATTCTTACCCGGATAATGCAAAACTATCGCAGCATTGAGCTTCT
GCTGATACAGCCCAACTTTCTGCCCTACTTGGATCTCTTTCAAAAGGAGT
CGGTGCGGGTCGAGGTTTGCAAAAACATTCTCAGTTTCTACAAACAGAAT
AGTGACGAATATACTTGCGACGCTGTGGTAACAAACGCATTGATGTATCT
CGGGAAGATCTTGAACGATTCAGTGAATGCCCTGTCCGTGGATGATGAAC
GTCGTCAGATAGCTCAGCTCATCAATGTCTTTATTCACAAAGTTCACTTT
GGAAATGACTTGGAGCAGCAGCTAAGTTTTTATGTGGAGGCGCGGGGCAC
GTTCAGCAACCTGGACGCAGTATACGTTACTCTGGTGCATGCGGCCTGCA
AGTTAGCCACCCGAAACCGTTCGAAATCAACGGGTTTTGTTAAGGCCTGC
ATCGCCTACTGCTTCATCACCATTCCCAGCATTGAAGCTGTCCAGCAGCA
AATGAATTTGTACTTACTATGCGGACAGCTGGCTCTGCAGCATCTCTGTC
TGGGACAAGCTGATGCTTGCTTTGAGGCCGCTTTGCAATTGGTTAATGAG
TTGCCCGCTGCCACGGTGGACTTTGATGGAAAGCCTCGCAGCTTAGAGCC
ATTCCTTGTCTCGTATATGTGTAATATCCTGGCCACATTAATCGTGGTAC
CAGATAGTCCGGAACAGGGTGTCCTCTATTTTCTTCGCCTTCTGCTAGAA
GTGGTTGGCAGACATAAATTCAAAGTTGACAGCTCAGCGCCGAGTATCAT
CTATCTGCATTCCCTCGATATGCTGTATGTGCAGAGTCTGGAAAGGTTTC
CCTATCATATAAAAGGAGTGGTGTCCAATGACGATTTGTATGGCCACGAC
CCCAAATTCTTGCAGGAGGTAAACAATATGTGCGCTCAGGTTGTTGATGC
CATTCTTCTGCAGCTGAAATCGTTGGGAGTAGCGCAGCAGCAAAGATCGC
AAGCGGAGCTAGCCCTGGAACTTTTTTTAAGGATTGTAAAGTACGCTGAT
CTGGAGAGGGAAACTATCGCTCAATTGGCAGTCAATCTGTGGCTCCTAGC
TAACAAGGCACAATCACAATTGGATGTGAAAACACTACCCCAAACTCTGC
GCAGTGTAGAGATCATATACAAGCAAATAAAGGATGCATCACCCATAAGG
GCTCAAACTATTGCCAAACTGCTACTGCGCGTGCGCAGCAGCTGAAAGCT
TTCTAGACCAT

BS17873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 2829 CG8202-PA 1..2829 17..2845 14145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 3092 CG8202-RA 43..2871 17..2845 14145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8732766..8733421 411..1066 3280 100 Plus
3R 32079331 3R 8734420..8734751 1828..2159 1660 100 Plus
3R 32079331 3R 8734047..8734358 1516..1827 1560 100 Plus
3R 32079331 3R 8734808..8735118 2158..2468 1555 100 Plus
3R 32079331 3R 8733708..8733990 1234..1516 1415 100 Plus
3R 32079331 3R 8735173..8735443 2467..2737 1355 100 Plus
3R 32079331 3R 8732544..8732719 239..414 865 99.4 Plus
3R 32079331 3R 8733480..8733648 1065..1233 845 100 Plus
3R 32079331 3R 8732369..8732484 124..239 580 100 Plus
3R 32079331 3R 8735509..8735616 2738..2845 540 100 Plus
3R 32079331 3R 8732215..8732310 33..128 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:41:35 has no hits.

BS17873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:44 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 1..2829 17..2845 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:33 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 37..2864 17..2844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:54 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 43..2870 17..2844 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:18:44 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 33..2865 13..2845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:38 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 43..2870 17..2844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:38 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8734048..8734358 1517..1827 100 -> Plus
3R 8732133..8732149 17..33 100 -> Plus
3R 8732216..8732306 34..124 100 -> Plus
3R 8732370..8732483 125..238 100 -> Plus
3R 8732544..8732715 239..410 100 -> Plus
3R 8732766..8733421 411..1066 100 -> Plus
3R 8733482..8733648 1067..1233 100 -> Plus
3R 8733708..8733990 1234..1516 100 -> Plus
3R 8734420..8734751 1828..2159 100 -> Plus
3R 8734810..8735118 2160..2468 100 -> Plus
3R 8735175..8735443 2469..2737 100 -> Plus
3R 8735509..8735615 2738..2844 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:54 Download gff for BS17873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4557855..4557871 17..33 100 -> Plus
arm_3R 4557938..4558028 34..124 100 -> Plus
arm_3R 4558092..4558205 125..238 100 -> Plus
arm_3R 4558266..4558437 239..410 100 -> Plus
arm_3R 4558488..4559143 411..1066 100 -> Plus
arm_3R 4559204..4559370 1067..1233 100 -> Plus
arm_3R 4559430..4559712 1234..1516 100 -> Plus
arm_3R 4559770..4560080 1517..1827 100 -> Plus
arm_3R 4560142..4560473 1828..2159 100 -> Plus
arm_3R 4560532..4560840 2160..2468 100 -> Plus
arm_3R 4560897..4561165 2469..2737 100 -> Plus
arm_3R 4561231..4561337 2738..2844 100   Plus

BS17873.pep Sequence

Translation from 16 to 2844

> BS17873.pep
MANLEWVCVPRCYEVRKNCLTGQATLEHPLKQRTVTVVDSNPLSRALEGT
DPLSQFARQDDELNDPLSQMVSEFDLKSKRRERDRTEPEDNTLQWSSRRL
GILNRFTTNEKLSLSTSFLVSSGSLDGGNESIKAQTVVADKTKFRLEQLD
HFDDGSMRHMMDLTQQEYIQRFEQLKQELIQSWHNDQRVKALKIAIQCAK
MLADTTVLQFYPSQYVLITDILDVFGKLVYERLRAKASGDPAASAATLER
EREAARDTCQNWFYKIASIRELLPRFYLELSIFKCYEFLSSSREEYERIL
QRLTHQLRGIADPLVSSYARCYLVRMGVTLTSSKTYIRENFADLFLIYPQ
IFRFVARFNLHPEIVTASSYLQLYAPAFDYMLLCLVHKSELHTQDILNEC
KQLKNNGAILMSVLSSFNSEFIATNALEFIALINASETPGISKSQLLRSL
GSCVSSCPPLQEQRVTFLKAAFETINKLTDPNEYINCVETWAVFVSQYFT
IHEVNRLLGELNTRMCLGKAYEKHYSQLQNILTRIMQNYRSIELLLIQPN
FLPYLDLFQKESVRVEVCKNILSFYKQNSDEYTCDAVVTNALMYLGKILN
DSVNALSVDDERRQIAQLINVFIHKVHFGNDLEQQLSFYVEARGTFSNLD
AVYVTLVHAACKLATRNRSKSTGFVKACIAYCFITIPSIEAVQQQMNLYL
LCGQLALQHLCLGQADACFEAALQLVNELPAATVDFDGKPRSLEPFLVSY
MCNILATLIVVPDSPEQGVLYFLRLLLEVVGRHKFKVDSSAPSIIYLHSL
DMLYVQSLERFPYHIKGVVSNDDLYGHDPKFLQEVNNMCAQVVDAILLQL
KSLGVAQQQRSQAELALELFLRIVKYADLERETIAQLAVNLWLLANKAQS
QLDVKTLPQTLRSVEIIYKQIKDASPIRAQTIAKLLLRVRSS*

BS17873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-PA 942 CG8202-PA 1..942 1..942 4800 100 Plus