Clone BS17876 Report

Search the DGRC for BS17876

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptDCP2-RB
Protein status:BS17876.pep: full length peptide match
Sequenced Size:1727

Clone Sequence Records

BS17876.complete Sequence

1727 bp assembled on 2009-12-07

GenBank Submission: KX801062

> BS17876.complete
GAAGTTATCAGTCGACATGGAGCTAAACAATCTAATACGTATGTGTTTCC
AAATCGAACTGGCCCATTGGTTCTATTTGGATTTCTTTTGTGCCCCCGAA
TCTGGCGAGGATGGCGAGACCCCGAAGTGCGTGCAACGAAAGCTGCCATC
GGTGGGCATCAAGCAGTTTGCCATGCAGTTGTTCCAACACATTCCCTTCC
TGAACAAACATTTTGGCACCGTGGATCAAATCCTGGACGAGTGGAAGAAC
TACAAGCTATCGGTGCCCACTTATGGCGCTATTCTGGTGTCCGAGGATCA
CAATCACTGCTTGCTAGTGCAGTCCTACTTCGCGCGCAACTCCTGGGGAT
TTCCCAAGGGCAAGATCAATGAGAACGAAGACCCAGCCCATTGTGCAACG
AGAGAGGTTTATGAGGAGACCGGGTTCGATATCACGGACCTAATCGATGC
CAACGACTACATCGAGGCGTTCATCAACTACCAGTACACGCGGCTGTACG
TGGTGCGAAACATACCGATGGACACGCAGTTCGCGCCCCGCACTCGCAAC
GAGATCAAGTGCTGCGACTGGTTCCGTATCGATGCGCTGCCGGTGAACAA
GAACGATGCCATATCAAAGGCCAAGTTGGGCAAGACCTCCAACTCCTTCT
TCATGATTATGCCGTTTGTGAAGCGCCTGAAGAAGTGGGTGAACGATCGG
AAGGCTGGAATCGAGCCGCGTCGCCGCAAATTCTCTGGTCAGCAATCGCC
AAAAGCGGCCTCGCCCACCAATATGAACGGAAATTGCAAGAAGGACGTCA
CAGGAGTGCGAAATGAATCGCAACGACAGAGGCACAAGTCCATGGGCGAC
TTGGATGGCGTCAAATTGAATAATCTCAATGGCAAGGGGACCGTTGGAAC
GGGAGCGGGATCGGCAGCTTCCGCCTCCGCCACCGCTGCCATCAACTCGA
TGAACATATGCAATAGCAATGGGAAACGCAATAAGCAAAATGCGGCTGCG
GGCAGCAATCAGGCAACGCCAACTACAATAGCAACGCCAATGACGTCAAA
TGGCGCCGTCGTAGGAGGTACTGTATCCTCGAAGCGTCAACTGTTCCATA
GCCAAAGTCAGAACGATGCGCAGCAATCGGCAAGCAATGAGAAGATTGTC
AGCTCCTTCGATTTAATACGCAAGGAGAAGCAGCAACAACTTAAGGCAGC
TAAGGCGCAAAAGCAGCAGCAACAACAGCAGCAACGATCGCGCACCAAGT
CGCAGAGTGATAAGCAGTACAATCCACAGCAGCCAGTCAAAATCCTGGGA
CAACAGCAGCCCACAACGGGCATGGATTTGATAGCCATGCTATCGGCAGC
GGCGGCAGCTCAAAAGACACCAAACAACGAGCAGCAAACACAAGAGAAGC
AGCAGCAGCAACAACGACCACGACCTGCTTCAGTGTCGCTTAACCTTGGA
GCAGGCAGTGCCACAGGAGCAACAACATCAGCTCCGGATGCCCAGTACAT
GCACAGGCTGCAGCGCATGGCATCGGGCACAAATTTGAGGATTCTGAAGC
GGGCACAGTCGCAGCAGCCGCAGCAGCACCATCAGCAACAGTTGCAACTA
GAACAGCAACAACAGCAGCAGCAGCAGCTGGGAATCGACTTTACGCCAAA
TTTGAATTCGTGGACGAATTTCTCCTTTACCAAGAACTTCATAGCAAATG
TGTTTTGCTAAAAGCTTTCTAGACCAT

BS17876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RA 2376 CG6169-PA 679..2376 14..1711 8490 100 Plus
DCP2-RD 1695 CG6169-PD 1..1695 17..1711 8475 100 Plus
DCP2-RB 1695 CG6169-PB 1..1695 17..1711 8475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RD 2690 CG6169-RD 548..2246 14..1712 8495 100 Plus
DCP2-RA 3665 CG6169-RA 1523..3221 14..1712 8495 100 Plus
DCP2-RB 2850 CG6169-RB 708..2406 14..1712 8495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15822071..15822810 1144..405 3700 100 Minus
3L 28110227 3L 15821444..15822013 1712..1143 2850 100 Minus
3L 28110227 3L 15822962..15823185 407..184 1105 99.6 Minus
3L 28110227 3L 15823247..15823420 187..14 870 100 Minus
Blast to na_te.dros performed 2014-11-28 01:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2254..2701 1209..1651 326 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2532 1195..1428 271 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2413..2886 1173..1639 251 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7035 1347..1620 214 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6941 1210..1437 210 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2460..2587 1544..1668 209 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2677 1299..1650 204 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6996 1341..1626 183 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6956 1118..1619 181 56.4 Plus
roo 9092 roo DM_ROO 9092bp 1082..1164 1347..1429 162 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7230 1165..1659 161 55.2 Plus
roo 9092 roo DM_ROO 9092bp 1057..1144 1340..1433 139 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1567 1361..1432 138 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1522..1578 1363..1421 118 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1045..1164 1360..1483 114 58.1 Plus

BS17876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:45 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RA 675..2376 8..1711 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:18 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RD 610..2302 17..1709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:07 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RB 711..2403 17..1709 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:59 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RD 610..2302 17..1709 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:00 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
DCP2-RB 711..2403 17..1709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:00 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15822963..15823181 188..406 100 <- Minus
3L 15823247..15823417 17..187 100   Minus
3L 15821447..15822011 1145..1709 100 <- Minus
3L 15822071..15822808 407..1144 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:07 Download gff for BS17876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15816063..15816281 188..406 100 <- Minus
arm_3L 15816347..15816517 17..187 100   Minus
arm_3L 15814547..15815111 1145..1709 100 <- Minus
arm_3L 15815171..15815908 407..1144 100 <- Minus

BS17876.3prime Sequence

804 bp (803 high quality bases) assembled on 2007-05-30

> BS17876.3prime
ATGGTCTAGAAAGCTTTTAGCAAACACATTTGCTATGAAGTTCTTGGTAA
AGGAGAAATTCGTCCACGAATTCAAATTTGGCGTAAAGTCGATTCCCAGC
TGCTGCTGCTGCTGTTGTTGCTGTTCTAGTTGCAACTGTTGCTGATGGTG
CTGCTGCGGCTGCTGCGACTGTGCCCGCTTCAGAATCCTCAAATTTGTGC
CCGATGCCATGCGCTGCAGCCTGTGCATGTACTGGGCATCCGGAGCTGAT
GTTGTTGCTCCTGTGGCACTGCCTGCTCCAAGGTTAAGCGACACTGAAGC
AGGTCGTGGTCGTTGTTGCTGCTGCTGCTTCTCTTGTGTTTGCTGCTCGT
TGTTTGGTGTCTTTTGAGCTGCCGCCGCTGCCGATAGCATGGCTATCAAA
TCCATGCCCGTTGTGGGCTGCTGTTGTCCCAGGATTTTGACTGGCTGCTG
TGGATTGTACTGCTTATCACTCTGCGACTTGGTGCGCGATCGTTGCTGCT
GTTGTTGCTGCTGCTTTTGCGCCTTAGCTGCCTTAAGTTGTTGCTGCTTC
TCCTTGCGTATTAAATCGAAGGAGCTGACAATCTTCTCATTGCTTGCCGA
TTGCTGCGCATCGTTCTGACTTTGGCTATGGAACAGTTGACGCTTCGAGG
ATACAGTACCTCCTACGACGGCGCCATTTGACGTCATTGGCGTTGCTATT
GTAGTTGGCGTTGCCTGATTGCTGCCCGCAGCCGCATTTTGCTTATTGCG
TTTCCCATTGCTATTGCATATGTTCATCGAGTTGATGGCAGCGGTGGCGG
AGGC

BS17876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6169-PB 1695 CG6169-RB 907..1689 804..22 3915 100 Minus
CG6169-PA 2376 CG6169-RA 1588..2370 804..22 3915 100 Minus
CG6169-PD 1695 CG6169-RD 907..1689 804..22 3915 100 Minus
CG6169-PC 2325 CG6169-RC 1757..2319 584..22 2815 100 Minus
CG6169-PC 2325 CG6169-RC 1534..1755 804..583 1110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RD 2690 CG6169-RD 1457..2246 804..16 3925 99.9 Minus
DCP2-RA 3665 CG6169-RA 2432..3221 804..16 3925 99.9 Minus
DCP2-RB 2850 CG6169-RB 1617..2406 804..16 3925 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15821451..15822013 22..584 2815 100 Plus
3L 28110227 3L 15822071..15822292 583..804 1110 100 Plus
Blast to na_te.dros performed 2015-02-10 16:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2254..2701 518..76 326 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2532 532..299 271 61.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2413..2886 554..88 251 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2960 787..195 250 55.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7035 380..107 214 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6941 517..290 210 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2460..2587 183..59 209 64.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2677 428..77 204 58 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6996 386..101 183 56.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6956 609..108 181 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..7098 380..33 174 55.8 Minus
roo 9092 roo DM_ROO 9092bp 1082..1164 380..298 162 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7230 562..68 161 55.2 Minus
roo 9092 roo DM_ROO 9092bp 1057..1144 387..294 139 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1567 366..295 138 69.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1522..1578 364..306 118 71.2 Minus
roo 9092 roo DM_ROO 9092bp 1045..1164 367..244 114 58.1 Minus
gypsy8 4955 gypsy8 GYPSY8 4955bp 1736..1773 350..313 109 76.3 Minus

BS17876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:44:58 Download gff for BS17876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6169-PD 907..1695 17..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:32 Download gff for BS17876.3prime
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RB 1617..2410 10..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:45 Download gff for BS17876.3prime
Subject Subject Range Query Range Percent Splice Strand
DCP2-RB 1617..2410 10..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:45 Download gff for BS17876.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15821440..15822011 10..582 99 <- Plus
3L 15822071..15822292 583..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:32 Download gff for BS17876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15814540..15815111 10..582 99 <- Plus
arm_3L 15815171..15815392 583..804 100   Plus

BS17876.5prime Sequence

841 bp (748 high quality bases) assembled on 2007-05-30

> BS17876.5prime
GAAGTTATCAGTCGACATGGAGCTAAACAATCTAATACGTATGTGTTTCC
AAATCGAACTGGCCCATTGGTTCTATTTGGATTTCTTTTGTGCCCCCGAA
TCTGGCGAGGATGGCGAGACCCCGAAGTGCGTGCAACGAAAGCTGCCATC
GGTGGGCATCAAGCAGTTTGCCATGCAGTTGTTCCAACACATTCCCTTCC
TGAACAAACATTTTGGCACCGTGGATCAAATCCTGGACGAGTGGAAGAAC
TACAAGCTATCGGTGCCCACTTATGGCGCTATTCTGGTGTCCGAGGATCA
CAATCACTGCTTGCTAGTGCAGTCCTACTTCGCGCGCAACTCCTGGGGAT
TTCCCAAGGGCAAGATCAATGAGAACGAAGACCCAGCCCATTGTGCAACG
AGAGAGGTTTATGAGGAGACCGGGTTCGATATCACGGACCTAATCGATGC
CAACGACTACATCGAGGCGTTCATCAACTACCAGTACACGCGGCTGTACG
TGGTGCGAAACATACCGATGGACACGCAGTTCGCGCCCCGCACTCGCAAC
GAGATCAAGTGCTGCGACTGGTTCCGTATCGATGCGCTGCCGGTGAACAA
GAACGATGCCATATCAAAGGCCAAGTTGGGCAAGACCTCCAACTCCTTCT
TCATGATTATGCCGTTTGTGAAGCGCCTGAAGAAGTGGGTGAACGATCGG
AAGGCTGGAATCGAGCCGCGTCGCCGCAAATTCTCTGGTCAGCAATCGCC
AAAAGCGGCCTCGCCCACCAATATGAACGGAAATTGCAAGAAGGACGTCA
CAGGAGTGCGAAATGAATCGCAACGACAGAGGCACAAGTCC

BS17876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6169-PA 2376 CG6169-RA 679..1506 14..841 4140 100 Plus
CG6169-PB 1695 CG6169-RB 1..825 17..841 4125 100 Plus
CG6169-PD 1695 CG6169-RD 1..825 17..841 4125 100 Plus
CG6169-PC 2325 CG6169-RC 1018..1452 407..841 2175 100 Plus
CG6169-PC 2325 CG6169-RC 586..979 14..407 1970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RE 5934 CG6169-RE 1523..2350 14..841 4140 100 Plus
DCP2-RD 2690 CG6169-RD 548..1375 14..841 4140 100 Plus
DCP2-RA 3665 CG6169-RA 1523..2350 14..841 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15822374..15822810 841..405 2185 100 Minus
3L 28110227 3L 15822962..15823185 407..184 1105 99.6 Minus
3L 28110227 3L 15823247..15823420 187..14 870 100 Minus
Blast to na_te.dros performed 2015-02-13 06:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 1110..1201 723..815 110 63.2 Plus

BS17876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:03 Download gff for BS17876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6169-PA 675..1506 8..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:09 Download gff for BS17876.5prime
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RA 1519..2350 8..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:11 Download gff for BS17876.5prime
Subject Subject Range Query Range Percent Splice Strand
DCP2-RA 1519..2350 8..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:11 Download gff for BS17876.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15823247..15823424 8..187 98   Minus
3L 15822374..15822808 407..841 100 <- Minus
3L 15822963..15823181 188..406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:09 Download gff for BS17876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15815474..15815908 407..841 100 <- Minus
arm_3L 15816063..15816281 188..406 100 <- Minus
arm_3L 15816347..15816524 8..187 98   Minus

BS17876.pep Sequence

Translation from 16 to 1710

> BS17876.pep
MELNNLIRMCFQIELAHWFYLDFFCAPESGEDGETPKCVQRKLPSVGIKQ
FAMQLFQHIPFLNKHFGTVDQILDEWKNYKLSVPTYGAILVSEDHNHCLL
VQSYFARNSWGFPKGKINENEDPAHCATREVYEETGFDITDLIDANDYIE
AFINYQYTRLYVVRNIPMDTQFAPRTRNEIKCCDWFRIDALPVNKNDAIS
KAKLGKTSNSFFMIMPFVKRLKKWVNDRKAGIEPRRRKFSGQQSPKAASP
TNMNGNCKKDVTGVRNESQRQRHKSMGDLDGVKLNNLNGKGTVGTGAGSA
ASASATAAINSMNICNSNGKRNKQNAAAGSNQATPTTIATPMTSNGAVVG
GTVSSKRQLFHSQSQNDAQQSASNEKIVSSFDLIRKEKQQQLKAAKAQKQ
QQQQQQRSRTKSQSDKQYNPQQPVKILGQQQPTTGMDLIAMLSAAAAAQK
TPNNEQQTQEKQQQQQRPRPASVSLNLGAGSATGATTSAPDAQYMHRLQR
MASGTNLRILKRAQSQQPQQHHQQQLQLEQQQQQQQQLGIDFTPNLNSWT
NFSFTKNFIANVFC*

BS17876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-PD 564 CG6169-PD 1..564 1..564 2950 100 Plus
DCP2-PA 791 CG6169-PA 228..791 1..564 2950 100 Plus
DCP2-PB 564 CG6169-PB 1..564 1..564 2950 100 Plus
DCP2-PE 792 CG6169-PE 228..792 1..564 2938 99.8 Plus
Smr-PF 3601 CG4013-PF 9..238 292..537 204 27.5 Plus